Wall clock time and date at job start Mon Mar 30 2020 03:51:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31334 * 1 3 3 Si 1.86806 * 119.99492 * 2 1 4 4 H 1.48499 * 109.46774 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46751 * 300.00316 * 3 2 1 6 6 H 1.48497 * 109.46887 * 60.00385 * 3 2 1 7 7 C 1.38943 * 120.00447 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99804 * 179.97438 * 7 2 1 9 9 N 1.37168 * 119.99706 * 359.97438 * 7 2 1 10 10 N 1.40075 * 126.03142 * 0.02562 * 9 7 2 11 11 C 1.31896 * 108.27050 * 179.74120 * 10 9 7 12 12 C 1.48228 * 125.88704 * 180.02562 * 11 10 9 13 13 C 1.39503 * 120.10395 * 184.97382 * 12 11 10 14 14 C 1.37985 * 119.97469 * 179.97438 * 13 12 11 15 15 C 1.38285 * 120.19692 * 359.97438 * 14 13 12 16 16 C 1.38823 * 120.20339 * 359.97438 * 15 14 13 17 17 O 1.35904 * 119.98897 * 180.02562 * 16 15 14 18 18 C 1.38508 * 120.01980 * 359.78757 * 16 15 14 19 19 C 1.40991 * 108.22670 * 359.97438 * 11 10 9 20 20 C 1.35609 * 107.86918 * 359.97438 * 19 11 10 21 21 O 1.35683 * 126.15484 * 180.02562 * 20 19 11 22 22 H 0.97000 * 120.00437 * 359.97438 * 1 2 3 23 23 H 1.07988 * 120.00985 * 359.95131 * 13 12 11 24 24 H 1.08006 * 119.90184 * 180.02562 * 14 13 12 25 25 H 1.08002 * 119.89615 * 180.02562 * 15 14 13 26 26 H 0.96692 * 114.00240 * 89.99391 * 17 16 15 27 27 H 1.07997 * 120.09332 * 180.23451 * 18 16 15 28 28 H 1.07997 * 126.06719 * 180.02562 * 19 11 10 29 29 H 0.96698 * 114.00186 * 269.98091 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3133 0.0000 0.0000 3 14 2.2472 1.6179 0.0000 4 1 3.7072 1.3466 -0.0006 5 1 1.8883 2.3965 -1.2125 6 1 1.8884 2.3964 1.2125 7 6 2.0081 -1.2032 -0.0005 8 1 3.0881 -1.2031 -0.0010 9 7 1.3223 -2.3912 -0.0005 10 7 -0.0707 -2.5384 -0.0005 11 6 -0.3502 -3.8274 -0.0062 12 6 -1.7080 -4.4219 -0.0088 13 6 -1.8667 -5.8044 0.0898 14 6 -3.1319 -6.3550 0.0877 15 6 -4.2448 -5.5403 -0.0114 16 6 -4.0960 -4.1635 -0.1088 17 8 -5.1928 -3.3669 -0.2054 18 6 -2.8303 -3.6012 -0.1025 19 6 0.8650 -4.5422 -0.0106 20 6 1.8781 -3.6406 -0.0079 21 8 3.2044 -3.9269 -0.0112 22 1 -0.4851 0.8400 0.0004 23 1 -0.9996 -6.4434 0.1673 24 1 -3.2534 -7.4255 0.1645 25 1 -5.2329 -5.9764 -0.0121 26 1 -5.5403 -3.0709 0.6470 27 1 -2.7133 -2.5300 -0.1744 28 1 0.9705 -5.6170 -0.0160 29 1 3.5902 -4.0136 0.8713 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261181552.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:59 Heat of formation + Delta-G solvation = -8.405905 kcal Electronic energy + Delta-G solvation = -16829.433202 eV Core-core repulsion = 13911.722637 eV Total energy + Delta-G solvation = -2917.710565 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.67000 -40.34809 -37.91898 -37.41820 -35.60300 -33.15722 -31.33193 -30.52131 -29.46593 -27.00011 -24.22360 -23.44778 -21.84049 -21.23291 -20.07222 -19.01870 -18.10756 -17.25770 -17.02229 -16.39326 -16.20771 -15.99833 -15.36786 -14.84795 -14.83176 -14.42015 -14.17496 -13.73904 -13.37350 -13.06485 -12.87076 -12.79644 -12.44537 -12.27419 -11.93338 -11.51169 -11.39201 -10.72251 -10.55064 -9.63684 -9.26264 -9.16180 -8.57832 -6.36686 0.18164 0.43203 1.14637 1.34410 1.53603 1.59993 2.01287 2.13869 2.48352 2.92951 3.06238 3.31077 3.53435 4.04191 4.15591 4.25985 4.45032 4.56959 4.71265 4.95338 4.98971 5.07702 5.17106 5.34177 5.51538 5.53362 5.64877 5.87352 6.00270 6.13357 6.48794 6.73097 6.88843 7.39289 7.54830 8.40634 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.024704 B = 0.006961 C = 0.005448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.144759 B = 4021.532370 C = 5138.242337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C -0.001 4.001 3 Si 1.018 2.982 4 H -0.247 1.247 5 H -0.270 1.270 6 H -0.265 1.265 7 C -0.352 4.352 8 H 0.131 0.869 9 N -0.176 5.176 10 N -0.278 5.278 11 C -0.007 4.007 12 C 0.015 3.985 13 C -0.123 4.123 14 C -0.090 4.090 15 C -0.150 4.150 16 C 0.099 3.901 17 O -0.510 6.510 18 C -0.157 4.157 19 C -0.283 4.283 20 C 0.123 3.877 21 O -0.468 6.468 22 H 0.280 0.720 23 H 0.141 0.859 24 H 0.170 0.830 25 H 0.158 0.842 26 H 0.407 0.593 27 H 0.097 0.903 28 H 0.159 0.841 29 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.174 -7.632 3.514 9.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C -0.214 4.214 3 Si 0.837 3.163 4 H -0.170 1.170 5 H -0.195 1.195 6 H -0.190 1.190 7 C -0.484 4.484 8 H 0.148 0.852 9 N 0.046 4.954 10 N -0.114 5.114 11 C -0.158 4.158 12 C 0.013 3.987 13 C -0.143 4.143 14 C -0.107 4.107 15 C -0.169 4.169 16 C 0.055 3.945 17 O -0.323 6.323 18 C -0.177 4.177 19 C -0.315 4.315 20 C -0.046 4.046 21 O -0.271 6.271 22 H 0.090 0.910 23 H 0.159 0.841 24 H 0.187 0.813 25 H 0.175 0.825 26 H 0.265 0.735 27 H 0.116 0.884 28 H 0.177 0.823 29 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -4.700 -6.436 2.316 8.299 hybrid contribution 0.909 0.482 0.906 1.371 sum -3.791 -5.955 3.223 7.760 Atomic orbital electron populations 1.70366 1.08211 1.29382 1.36151 1.26838 0.96541 1.04084 0.93922 0.84555 0.78822 0.74327 0.78642 1.16965 1.19491 1.18986 1.20577 0.92912 0.81481 1.53458 0.85177 1.45795 1.04188 1.04989 1.40416 1.78540 0.89223 1.15529 1.28109 1.20907 0.93782 0.92060 1.09064 1.17963 0.88232 0.93819 0.98700 1.21376 0.99388 0.92316 1.01200 1.21306 0.90313 1.01442 0.97655 1.21680 1.01108 0.91562 1.02548 1.18446 0.85028 0.90387 1.00628 1.84744 1.42887 1.68353 1.36310 1.21484 0.92754 0.99785 1.03712 1.20738 0.89812 0.99180 1.21744 1.18987 0.84660 0.85099 1.15902 1.84769 1.17507 1.90541 1.34302 0.91017 0.84086 0.81269 0.82483 0.73467 0.88436 0.82334 0.75056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -46.39 11.81 21.66 0.26 -46.13 15 2 C 0.00 -0.06 5.50 84.94 0.47 0.41 15 3 Si 1.02 39.15 29.55 68.60 2.03 41.18 15 4 H -0.25 -8.76 7.11 99.48 0.71 -8.05 15 5 H -0.27 -10.18 7.11 99.48 0.71 -9.47 15 6 H -0.27 -9.77 7.11 99.48 0.71 -9.07 15 7 C -0.35 -19.40 10.17 84.03 0.85 -18.54 15 8 H 0.13 6.55 7.83 -2.91 -0.02 6.53 15 9 N -0.18 -10.09 3.74 -301.48 -1.13 -11.22 15 10 N -0.28 -16.38 10.06 -48.07 -0.48 -16.86 15 11 C -0.01 -0.38 6.98 42.47 0.30 -0.08 15 12 C 0.01 0.64 5.88 -20.05 -0.12 0.52 15 13 C -0.12 -3.99 9.57 22.51 0.22 -3.77 15 14 C -0.09 -2.22 10.03 22.22 0.22 -2.00 15 15 C -0.15 -3.92 9.98 22.42 0.22 -3.70 15 16 C 0.10 3.32 6.70 22.47 0.15 3.47 15 17 O -0.51 -15.16 13.50 -92.47 -1.25 -16.41 15 18 C -0.16 -6.69 9.63 22.60 0.22 -6.47 15 19 C -0.28 -13.30 10.19 22.34 0.23 -13.07 15 20 C 0.12 6.17 7.94 83.32 0.66 6.83 15 21 O -0.47 -19.61 13.55 -90.01 -1.22 -20.83 15 22 H 0.28 14.55 8.31 -92.71 -0.77 13.78 15 23 H 0.14 3.99 7.04 -2.92 -0.02 3.97 15 24 H 0.17 2.66 8.06 -2.91 -0.02 2.64 15 25 H 0.16 2.98 8.06 -2.91 -0.02 2.96 15 26 H 0.41 7.85 9.06 -74.06 -0.67 7.18 15 27 H 0.10 4.84 7.85 -2.91 -0.02 4.82 15 28 H 0.16 6.13 7.34 -2.91 -0.02 6.11 15 29 H 0.39 12.07 9.06 -74.06 -0.67 11.40 15 Total: -1.00 -75.36 268.70 1.50 -73.86 By element: Atomic # 1 Polarization: 32.93 SS G_CDS: -0.13 Total: 32.80 kcal Atomic # 6 Polarization: -39.82 SS G_CDS: 3.42 Total: -36.40 kcal Atomic # 7 Polarization: -72.85 SS G_CDS: -1.35 Total: -74.21 kcal Atomic # 8 Polarization: -34.77 SS G_CDS: -2.47 Total: -37.24 kcal Atomic # 14 Polarization: 39.15 SS G_CDS: 2.03 Total: 41.18 kcal Total: -75.36 1.50 -73.86 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261181552.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.458 kcal (2) G-P(sol) polarization free energy of solvation -75.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds