Wall clock time and date at job start Mon Mar 30 2020 03:52:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31402 * 1 3 3 Si 1.86797 * 120.00128 * 2 1 4 4 H 1.48497 * 109.47322 * 85.74911 * 3 2 1 5 5 H 1.48504 * 109.47389 * 205.75043 * 3 2 1 6 6 H 1.48502 * 109.47038 * 325.74822 * 3 2 1 7 7 C 1.39005 * 120.00254 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99973 * 199.60269 * 7 2 1 9 9 N 1.36859 * 120.00076 * 19.59605 * 7 2 1 10 10 N 1.40096 * 125.99995 * 211.50291 * 9 7 2 11 11 H 0.97006 * 126.00197 * 359.97438 * 10 9 7 12 12 C 1.37607 * 107.98783 * 179.83179 * 10 9 7 13 13 C 1.47701 * 126.01009 * 180.16141 * 12 10 9 14 14 C 1.39703 * 120.12412 * 0.02562 * 13 12 10 15 15 C 1.37933 * 119.95324 * 179.74393 * 14 13 12 16 16 C 1.38314 * 120.21539 * 0.50934 * 15 14 13 17 17 C 1.38828 * 120.25162 * 359.77012 * 16 15 14 18 18 O 1.35919 * 119.97748 * 179.97438 * 17 16 15 19 19 C 1.38464 * 120.04339 * 359.97438 * 17 16 15 20 20 C 1.36398 * 107.98185 * 0.42640 * 12 10 9 21 21 C 1.34776 * 125.98942 * 31.80961 * 9 7 2 22 22 O 1.21877 * 125.99017 * 359.96490 * 21 9 7 23 23 H 0.96997 * 120.00416 * 0.02562 * 1 2 3 24 24 H 1.08000 * 120.02215 * 359.97438 * 14 13 12 25 25 H 1.08000 * 119.89161 * 180.25632 * 15 14 13 26 26 H 1.07998 * 119.86982 * 179.74010 * 16 15 14 27 27 H 0.96698 * 113.99325 * 270.01642 * 18 17 16 28 28 H 1.08004 * 120.10641 * 179.97438 * 19 17 16 29 29 H 1.07997 * 126.00575 * 179.76206 * 20 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 2.4057 2.0983 1.3962 5 1 3.5877 1.4159 -0.6083 6 1 1.4933 2.6250 -0.7880 7 6 2.0091 -1.2038 -0.0005 8 1 3.0422 -1.2310 0.3133 9 7 1.3843 -2.3546 -0.3986 10 7 1.6491 -3.6437 0.0817 11 1 2.3076 -3.8775 0.7545 12 6 0.8085 -4.5196 -0.5664 13 6 0.7501 -5.9809 -0.3596 14 6 1.5997 -6.5926 0.5654 15 6 1.5385 -7.9568 0.7595 16 6 0.6455 -8.7239 0.0334 17 6 -0.1989 -8.1258 -0.8922 18 8 -1.0740 -8.8849 -1.6030 19 6 -0.1501 -6.7565 -1.0917 20 6 0.0428 -3.8017 -1.4375 21 6 0.4104 -2.4471 -1.3256 22 8 -0.0688 -1.5205 -1.9559 23 1 -0.4850 0.8400 -0.0004 24 1 2.3014 -5.9973 1.1307 25 1 2.1930 -8.4282 1.4778 26 1 0.6052 -9.7921 0.1869 27 1 -0.7175 -9.2182 -2.4378 28 1 -0.8062 -6.2902 -1.8118 29 1 -0.7129 -4.2019 -2.0971 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261184916.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:01 Heat of formation + Delta-G solvation = 34.212883 kcal Electronic energy + Delta-G solvation = -16850.811248 eV Core-core repulsion = 13934.948772 eV Total energy + Delta-G solvation = -2915.862476 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.24793 -39.29643 -36.72370 -35.04760 -33.51666 -31.77584 -30.03020 -29.28848 -28.40182 -25.16642 -22.96510 -22.43241 -20.03672 -19.95679 -18.27013 -17.66573 -16.49516 -15.91842 -15.32839 -15.25073 -14.73606 -14.14263 -13.89937 -13.70079 -13.41140 -12.69975 -12.47283 -12.35781 -11.87988 -11.68148 -11.49718 -11.12853 -10.97150 -10.82047 -10.53057 -10.43309 -9.52915 -8.89781 -8.68156 -8.01339 -7.57909 -6.66729 -6.34336 -4.13892 1.00825 1.33776 2.84755 3.01175 3.13495 3.23261 3.34562 3.88032 4.13210 4.24166 4.81977 4.89367 4.91638 5.16170 5.24616 5.28052 5.52579 5.60922 5.80891 5.97834 6.36346 6.41544 6.43373 6.65291 6.83393 7.00020 7.16561 7.22020 7.63307 7.90400 7.96248 8.65061 9.24439 9.33015 10.38286 10.57435 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.050052 B = 0.005363 C = 0.004940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.281153 B = 5219.793450 C = 5666.387609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.779 5.779 2 C 0.053 3.947 3 Si 0.941 3.059 4 H -0.276 1.276 5 H -0.265 1.265 6 H -0.276 1.276 7 C -0.334 4.334 8 H 0.096 0.904 9 N -0.226 5.226 10 N -0.511 5.511 11 H 0.415 0.585 12 C 0.130 3.870 13 C 0.015 3.985 14 C -0.131 4.131 15 C -0.098 4.098 16 C -0.158 4.158 17 C 0.108 3.892 18 O -0.500 6.500 19 C -0.127 4.127 20 C -0.311 4.311 21 C 0.486 3.514 22 O -0.565 6.565 23 H 0.277 0.723 24 H 0.121 0.879 25 H 0.126 0.874 26 H 0.125 0.875 27 H 0.389 0.611 28 H 0.137 0.863 29 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.058 -14.499 1.407 15.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C -0.165 4.165 3 Si 0.765 3.235 4 H -0.202 1.202 5 H -0.190 1.190 6 H -0.201 1.201 7 C -0.464 4.464 8 H 0.114 0.886 9 N -0.031 5.031 10 N -0.226 5.226 11 H 0.258 0.742 12 C 0.011 3.989 13 C 0.013 3.987 14 C -0.150 4.150 15 C -0.116 4.116 16 C -0.177 4.177 17 C 0.064 3.936 18 O -0.310 6.310 19 C -0.146 4.146 20 C -0.345 4.345 21 C 0.285 3.715 22 O -0.447 6.447 23 H 0.087 0.913 24 H 0.139 0.861 25 H 0.144 0.856 26 H 0.143 0.857 27 H 0.244 0.756 28 H 0.155 0.845 29 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 3.376 -13.511 1.639 14.023 hybrid contribution 0.928 0.336 0.192 1.005 sum 4.304 -13.175 1.831 13.981 Atomic orbital electron populations 1.69996 1.06572 1.28794 1.35376 1.25534 0.95386 1.00116 0.95443 0.85747 0.79508 0.80103 0.78152 1.20187 1.18956 1.20071 1.19495 0.94684 0.81264 1.51005 0.88607 1.44766 1.34366 0.94526 1.29439 1.45179 1.37281 1.00411 1.39750 0.74176 1.18667 0.93694 0.87761 0.98809 1.18118 0.95383 0.89738 0.95498 1.21174 0.99853 0.94977 0.98978 1.20847 0.98288 0.93424 0.99087 1.21376 0.96896 1.00334 0.99071 1.18282 0.91093 0.89342 0.94893 1.84834 1.39745 1.69230 1.37141 1.21434 0.99391 0.92758 1.01053 1.21840 1.08779 0.95249 1.08661 1.16118 0.82723 0.89317 0.83327 1.90694 1.58330 1.44967 1.50684 0.91299 0.86088 0.85630 0.85725 0.75583 0.84497 0.84430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -23.22 11.16 55.50 0.62 -22.60 15 2 C 0.05 1.46 4.88 -17.45 -0.09 1.38 15 3 Si 0.94 20.69 29.60 -169.99 -5.03 15.66 15 4 H -0.28 -5.75 7.11 56.52 0.40 -5.35 15 5 H -0.27 -5.65 7.11 56.52 0.40 -5.25 15 6 H -0.28 -6.13 7.11 56.52 0.40 -5.73 15 7 C -0.33 -9.12 10.26 -15.02 -0.15 -9.27 15 8 H 0.10 2.36 7.91 -52.48 -0.41 1.95 15 9 N -0.23 -6.11 3.61 -13.80 -0.05 -6.16 15 10 N -0.51 -10.95 7.14 33.41 0.24 -10.72 15 11 H 0.41 7.27 8.09 -182.59 -1.48 5.79 15 12 C 0.13 2.65 6.97 -82.07 -0.57 2.07 15 13 C 0.01 0.24 5.87 -104.99 -0.62 -0.38 15 14 C -0.13 -1.75 9.70 -39.15 -0.38 -2.13 15 15 C -0.10 -1.11 10.02 -39.67 -0.40 -1.50 15 16 C -0.16 -1.80 9.98 -39.34 -0.39 -2.19 15 17 C 0.11 1.39 6.70 -39.28 -0.26 1.12 15 18 O -0.50 -5.61 13.50 -19.48 -0.26 -5.87 15 19 C -0.13 -1.88 9.50 -39.00 -0.37 -2.25 15 20 C -0.31 -7.40 10.21 -39.27 -0.40 -7.80 15 21 C 0.49 14.12 7.20 -15.29 -0.11 14.01 15 22 O -0.57 -18.56 15.43 5.03 0.08 -18.49 15 23 H 0.28 7.68 8.31 -40.82 -0.34 7.35 15 24 H 0.12 1.43 7.18 -52.49 -0.38 1.05 15 25 H 0.13 1.05 8.06 -52.49 -0.42 0.63 15 26 H 0.12 1.14 8.06 -52.49 -0.42 0.72 15 27 H 0.39 2.38 9.06 45.56 0.41 2.80 15 28 H 0.14 2.01 6.98 -52.48 -0.37 1.64 15 29 H 0.14 2.94 7.23 -52.49 -0.38 2.56 15 LS Contribution 263.93 15.07 3.98 3.98 Total: -1.00 -36.23 263.93 -6.76 -42.98 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -2.58 Total: 8.15 kcal Atomic # 6 Polarization: -3.20 SS G_CDS: -3.74 Total: -6.94 kcal Atomic # 7 Polarization: -40.28 SS G_CDS: 0.81 Total: -39.47 kcal Atomic # 8 Polarization: -24.17 SS G_CDS: -0.19 Total: -24.36 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.03 Total: 15.66 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -36.23 -6.76 -42.98 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261184916.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.195 kcal (2) G-P(sol) polarization free energy of solvation -36.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.982 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds