Wall clock time and date at job start Mon Mar 30 2020 03:52:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31402 * 1 3 3 Si 1.86797 * 120.00128 * 2 1 4 4 H 1.48497 * 109.47322 * 85.74911 * 3 2 1 5 5 H 1.48504 * 109.47389 * 205.75043 * 3 2 1 6 6 H 1.48502 * 109.47038 * 325.74822 * 3 2 1 7 7 C 1.39005 * 120.00254 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99973 * 199.60269 * 7 2 1 9 9 N 1.36859 * 120.00076 * 19.59605 * 7 2 1 10 10 N 1.40096 * 125.99995 * 211.50291 * 9 7 2 11 11 H 0.97006 * 126.00197 * 359.97438 * 10 9 7 12 12 C 1.37607 * 107.98783 * 179.83179 * 10 9 7 13 13 C 1.47701 * 126.01009 * 180.16141 * 12 10 9 14 14 C 1.39703 * 120.12412 * 0.02562 * 13 12 10 15 15 C 1.37933 * 119.95324 * 179.74393 * 14 13 12 16 16 C 1.38314 * 120.21539 * 0.50934 * 15 14 13 17 17 C 1.38828 * 120.25162 * 359.77012 * 16 15 14 18 18 O 1.35919 * 119.97748 * 179.97438 * 17 16 15 19 19 C 1.38464 * 120.04339 * 359.97438 * 17 16 15 20 20 C 1.36398 * 107.98185 * 0.42640 * 12 10 9 21 21 C 1.34776 * 125.98942 * 31.80961 * 9 7 2 22 22 O 1.21877 * 125.99017 * 359.96490 * 21 9 7 23 23 H 0.96997 * 120.00416 * 0.02562 * 1 2 3 24 24 H 1.08000 * 120.02215 * 359.97438 * 14 13 12 25 25 H 1.08000 * 119.89161 * 180.25632 * 15 14 13 26 26 H 1.07998 * 119.86982 * 179.74010 * 16 15 14 27 27 H 0.96698 * 113.99325 * 270.01642 * 18 17 16 28 28 H 1.08004 * 120.10641 * 179.97438 * 19 17 16 29 29 H 1.07997 * 126.00575 * 179.76206 * 20 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 2.4057 2.0983 1.3962 5 1 3.5877 1.4159 -0.6083 6 1 1.4933 2.6250 -0.7880 7 6 2.0091 -1.2038 -0.0005 8 1 3.0422 -1.2310 0.3133 9 7 1.3843 -2.3546 -0.3986 10 7 1.6491 -3.6437 0.0817 11 1 2.3076 -3.8775 0.7545 12 6 0.8085 -4.5196 -0.5664 13 6 0.7501 -5.9809 -0.3596 14 6 1.5997 -6.5926 0.5654 15 6 1.5385 -7.9568 0.7595 16 6 0.6455 -8.7239 0.0334 17 6 -0.1989 -8.1258 -0.8922 18 8 -1.0740 -8.8849 -1.6030 19 6 -0.1501 -6.7565 -1.0917 20 6 0.0428 -3.8017 -1.4375 21 6 0.4104 -2.4471 -1.3256 22 8 -0.0688 -1.5205 -1.9559 23 1 -0.4850 0.8400 -0.0004 24 1 2.3014 -5.9973 1.1307 25 1 2.1930 -8.4282 1.4778 26 1 0.6052 -9.7921 0.1869 27 1 -0.7175 -9.2182 -2.4378 28 1 -0.8062 -6.2902 -1.8118 29 1 -0.7129 -4.2019 -2.0971 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261184916.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:01 Heat of formation + Delta-G solvation = 5.866830 kcal Electronic energy + Delta-G solvation = -16852.040425 eV Core-core repulsion = 13934.948772 eV Total energy + Delta-G solvation = -2917.091653 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.05720 -40.44594 -37.86668 -37.01116 -35.45340 -33.32571 -31.38404 -30.80043 -30.11676 -27.01594 -24.35779 -23.55131 -21.90223 -21.47568 -20.04859 -18.99269 -18.01251 -17.28186 -16.76299 -16.43710 -16.24041 -15.99753 -15.67227 -15.15147 -14.81081 -14.29379 -14.17451 -13.72370 -13.56447 -13.05509 -12.90311 -12.89513 -12.65224 -12.51920 -12.18844 -11.47969 -11.27340 -10.56318 -10.02885 -9.71318 -9.33270 -8.63607 -8.36956 -6.25919 -0.20444 0.33841 1.21850 1.32775 1.42215 1.52191 1.61672 2.30339 2.66637 2.87493 3.16408 3.23830 3.54247 3.77272 3.99879 4.19313 4.26504 4.52351 4.66169 4.87138 4.95358 5.12410 5.17909 5.25126 5.40378 5.44686 5.59713 5.83956 5.93196 6.18169 6.65912 6.90148 7.20593 7.39757 8.27844 8.58904 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.050052 B = 0.005363 C = 0.004940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.281153 B = 5219.793450 C = 5666.387609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C -0.002 4.002 3 Si 1.016 2.984 4 H -0.253 1.253 5 H -0.252 1.252 6 H -0.286 1.286 7 C -0.369 4.369 8 H 0.116 0.884 9 N -0.250 5.250 10 N -0.493 5.493 11 H 0.437 0.563 12 C 0.183 3.817 13 C -0.022 4.022 14 C -0.123 4.123 15 C -0.091 4.091 16 C -0.136 4.136 17 C 0.107 3.893 18 O -0.507 6.507 19 C -0.134 4.134 20 C -0.358 4.358 21 C 0.457 3.543 22 O -0.624 6.624 23 H 0.273 0.727 24 H 0.137 0.863 25 H 0.166 0.834 26 H 0.158 0.842 27 H 0.412 0.588 28 H 0.127 0.873 29 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.016 -18.015 2.970 19.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C -0.213 4.213 3 Si 0.835 3.165 4 H -0.177 1.177 5 H -0.175 1.175 6 H -0.212 1.212 7 C -0.498 4.498 8 H 0.134 0.866 9 N -0.055 5.055 10 N -0.211 5.211 11 H 0.284 0.716 12 C 0.063 3.937 13 C -0.024 4.024 14 C -0.142 4.142 15 C -0.108 4.108 16 C -0.155 4.155 17 C 0.062 3.938 18 O -0.321 6.321 19 C -0.153 4.153 20 C -0.391 4.391 21 C 0.257 3.743 22 O -0.510 6.510 23 H 0.082 0.918 24 H 0.155 0.845 25 H 0.184 0.816 26 H 0.175 0.825 27 H 0.271 0.729 28 H 0.145 0.855 29 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 5.389 -17.082 3.235 18.202 hybrid contribution 0.320 0.903 -0.275 0.997 sum 5.710 -16.179 2.960 17.410 Atomic orbital electron populations 1.70152 1.08787 1.29326 1.38647 1.26769 0.96097 1.04187 0.94297 0.84661 0.78092 0.74612 0.79119 1.17726 1.17526 1.21185 1.19991 0.95937 0.82035 1.51797 0.86633 1.44566 1.34557 0.96119 1.30278 1.44885 1.37722 0.98529 1.39949 0.71555 1.19140 0.90373 0.89669 0.94566 1.17986 0.98628 0.86868 0.98926 1.21442 0.98804 0.96400 0.97520 1.21281 0.98264 0.92228 0.99074 1.21835 0.94816 1.02051 0.96770 1.18334 0.91395 0.88539 0.95526 1.84788 1.40009 1.68748 1.38531 1.21515 0.98994 0.94033 1.00795 1.21762 1.11760 0.93525 1.12018 1.16874 0.83476 0.90547 0.83399 1.90605 1.60660 1.47023 1.52757 0.91790 0.84473 0.81637 0.82473 0.72898 0.85483 0.83258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -53.06 11.16 21.67 0.24 -52.82 15 2 C 0.00 -0.12 4.88 84.94 0.41 0.29 15 3 Si 1.02 43.71 29.60 68.60 2.03 45.75 15 4 H -0.25 -9.82 7.11 99.48 0.71 -9.11 15 5 H -0.25 -10.11 7.11 99.48 0.71 -9.41 15 6 H -0.29 -12.63 7.11 99.48 0.71 -11.92 15 7 C -0.37 -20.72 10.26 84.09 0.86 -19.86 15 8 H 0.12 5.74 7.91 -2.91 -0.02 5.71 15 9 N -0.25 -14.00 3.61 -315.73 -1.14 -15.14 15 10 N -0.49 -21.00 7.14 -48.21 -0.34 -21.34 15 11 H 0.44 14.57 8.09 -213.32 -1.73 12.84 15 12 C 0.18 7.43 6.97 40.31 0.28 7.71 15 13 C -0.02 -0.66 5.87 -20.10 -0.12 -0.78 15 14 C -0.12 -2.76 9.70 22.55 0.22 -2.54 15 15 C -0.09 -1.49 10.02 22.22 0.22 -1.27 15 16 C -0.14 -2.31 9.98 22.43 0.22 -2.09 15 17 C 0.11 2.33 6.70 22.47 0.15 2.48 15 18 O -0.51 -9.57 13.50 -92.64 -1.25 -10.82 15 19 C -0.13 -3.70 9.50 22.64 0.22 -3.49 15 20 C -0.36 -17.80 10.21 22.47 0.23 -17.57 15 21 C 0.46 28.05 7.20 84.87 0.61 28.66 15 22 O -0.62 -43.99 15.43 -4.92 -0.08 -44.06 15 23 H 0.27 16.23 8.31 -92.71 -0.77 15.46 15 24 H 0.14 2.60 7.18 -2.91 -0.02 2.58 15 25 H 0.17 1.53 8.06 -2.91 -0.02 1.50 15 26 H 0.16 1.76 8.06 -2.91 -0.02 1.73 15 27 H 0.41 3.55 9.06 -74.06 -0.67 2.87 15 28 H 0.13 3.70 6.98 -2.91 -0.02 3.68 15 29 H 0.15 6.77 7.23 -2.91 -0.02 6.75 15 Total: -1.00 -85.79 263.93 1.60 -84.20 By element: Atomic # 1 Polarization: 23.88 SS G_CDS: -1.18 Total: 22.70 kcal Atomic # 6 Polarization: -11.77 SS G_CDS: 3.31 Total: -8.46 kcal Atomic # 7 Polarization: -88.06 SS G_CDS: -1.24 Total: -89.30 kcal Atomic # 8 Polarization: -53.55 SS G_CDS: -1.33 Total: -54.88 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.75 kcal Total: -85.79 1.60 -84.20 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261184916.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.062 kcal (2) G-P(sol) polarization free energy of solvation -85.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds