Wall clock time and date at job start Mon Mar 30 2020 03:48:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31347 * 1 3 3 Si 1.86804 * 119.99776 * 2 1 4 4 H 1.48498 * 109.46693 * 239.99606 * 3 2 1 5 5 H 1.48497 * 109.47311 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47003 * 119.99473 * 3 2 1 7 7 C 1.38916 * 120.00023 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99789 * 180.02562 * 7 2 1 9 9 N 1.37146 * 120.00239 * 0.02562 * 7 2 1 10 10 N 1.40075 * 126.02374 * 0.02562 * 9 7 2 11 11 C 1.31938 * 108.26842 * 179.97438 * 10 9 7 12 12 C 1.48131 * 125.89716 * 179.97438 * 11 10 9 13 13 C 1.39429 * 120.16436 * 179.74647 * 12 11 10 14 14 C 1.37955 * 119.92262 * 179.69829 * 13 12 11 15 15 C 1.38441 * 120.25309 * 0.60251 * 14 13 12 16 16 C 1.38197 * 120.32404 * 359.67796 * 15 14 13 17 17 C 1.38565 * 120.07901 * 0.02562 * 16 15 14 18 18 O 1.35814 * 120.13039 * 180.02562 * 17 16 15 19 19 C 1.41024 * 108.21084 * 0.02562 * 11 10 9 20 20 C 1.35595 * 107.87255 * 359.97438 * 19 11 10 21 21 O 1.35679 * 126.15165 * 179.97438 * 20 19 11 22 22 H 0.97008 * 120.00324 * 0.02562 * 1 2 3 23 23 H 1.08001 * 120.03912 * 0.02562 * 13 12 11 24 24 H 1.07998 * 119.87826 * 180.30165 * 14 13 12 25 25 H 1.07993 * 119.83868 * 179.69667 * 15 14 13 26 26 H 1.08006 * 119.95968 * 180.02562 * 16 15 14 27 27 H 0.96705 * 114.00037 * 269.97910 * 18 17 16 28 28 H 1.08008 * 126.06572 * 180.02562 * 19 11 10 29 29 H 0.96705 * 114.00067 * 270.00556 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2474 1.6178 0.0000 4 1 3.1012 1.6964 -1.2125 5 1 1.2825 2.7465 -0.0006 6 1 3.1011 1.6965 1.2126 7 6 2.0081 -1.2030 0.0005 8 1 3.0881 -1.2030 0.0010 9 7 1.3224 -2.3908 0.0005 10 7 -0.0706 -2.5379 -0.0005 11 6 -0.3504 -3.8272 -0.0007 12 6 -1.7072 -4.4216 -0.0011 13 6 -1.8653 -5.8069 -0.0066 14 6 -3.1312 -6.3551 -0.0007 15 6 -4.2465 -5.5349 -0.0019 16 6 -4.1019 -4.1605 -0.0023 17 6 -2.8367 -3.5953 -0.0021 18 8 -2.6934 -2.2448 -0.0020 19 6 0.8653 -4.5420 0.0008 20 6 1.8781 -3.6404 0.0013 21 8 3.2044 -3.9265 0.0032 22 1 -0.4851 0.8401 -0.0004 23 1 -0.9977 -6.4500 -0.0102 24 1 -3.2528 -7.4282 -0.0001 25 1 -5.2344 -5.9712 -0.0022 26 1 -4.9760 -3.5262 -0.0028 27 1 -2.6514 -1.8536 -0.8854 28 1 0.9709 -5.6169 0.0006 29 1 3.5878 -4.0088 0.8872 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261187386.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:10 Heat of formation + Delta-G solvation = 23.719242 kcal Electronic energy + Delta-G solvation = -17192.919441 eV Core-core repulsion = 14276.601927 eV Total energy + Delta-G solvation = -2916.317514 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.81080 -38.70551 -35.92604 -35.77372 -33.74866 -31.49867 -29.64721 -28.90758 -27.56201 -25.03795 -22.54682 -21.93680 -20.03419 -19.30324 -18.14747 -17.52091 -16.45099 -15.54887 -15.09294 -14.76196 -14.56348 -14.31546 -13.47513 -13.41512 -12.97719 -12.80396 -12.40946 -11.95033 -11.82134 -11.35158 -11.22237 -11.16960 -10.86472 -10.71613 -10.17372 -9.74270 -9.72706 -8.79568 -8.67543 -8.21693 -7.46277 -7.20387 -6.62691 -4.31533 1.65688 1.82070 2.90902 3.02465 3.05749 3.36128 3.75718 3.81069 4.36526 4.63197 4.90441 5.01975 5.23437 5.36647 5.38057 5.69763 5.89084 6.00590 6.22984 6.47624 6.57448 6.78338 6.85948 6.92639 7.01921 7.08926 7.34991 7.37532 7.65099 8.03253 8.24409 8.56472 8.61763 9.31345 9.54289 10.30761 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.027641 B = 0.007670 C = 0.006023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.756616 B = 3649.717836 C = 4647.564114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.754 5.754 2 C 0.046 3.954 3 Si 0.935 3.065 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.267 1.267 7 C -0.315 4.315 8 H 0.117 0.883 9 N -0.147 5.147 10 N -0.210 5.210 11 C -0.003 4.003 12 C 0.005 3.995 13 C -0.105 4.105 14 C -0.134 4.134 15 C -0.128 4.128 16 C -0.152 4.152 17 C 0.117 3.883 18 O -0.467 6.467 19 C -0.280 4.280 20 C 0.122 3.878 21 O -0.469 6.469 22 H 0.277 0.723 23 H 0.123 0.877 24 H 0.117 0.883 25 H 0.116 0.884 26 H 0.121 0.879 27 H 0.386 0.614 28 H 0.123 0.877 29 H 0.366 0.634 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.798 -5.216 -0.094 6.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.380 5.380 2 C -0.173 4.173 3 Si 0.758 3.242 4 H -0.191 1.191 5 H -0.200 1.200 6 H -0.191 1.191 7 C -0.449 4.449 8 H 0.135 0.865 9 N 0.075 4.925 10 N -0.046 5.046 11 C -0.152 4.152 12 C 0.003 3.997 13 C -0.125 4.125 14 C -0.152 4.152 15 C -0.147 4.147 16 C -0.170 4.170 17 C 0.070 3.930 18 O -0.276 6.276 19 C -0.313 4.313 20 C -0.046 4.046 21 O -0.269 6.269 22 H 0.088 0.912 23 H 0.141 0.859 24 H 0.135 0.865 25 H 0.134 0.866 26 H 0.139 0.861 27 H 0.243 0.757 28 H 0.141 0.859 29 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -4.433 -3.992 -0.111 5.967 hybrid contribution 1.006 -0.019 0.077 1.009 sum -3.427 -4.011 -0.035 5.275 Atomic orbital electron populations 1.70232 1.05890 1.28272 1.33639 1.25656 0.95816 1.00243 0.95577 0.85884 0.79219 0.79474 0.79584 1.19109 1.20013 1.19145 1.19922 0.92056 0.80863 1.52074 0.86495 1.45631 1.04444 1.03825 1.38558 1.78852 0.87359 1.12872 1.25555 1.20095 0.91152 0.92777 1.11168 1.18447 0.90315 0.92363 0.98591 1.21006 0.97243 0.93579 1.00680 1.20906 0.92383 0.99247 1.02680 1.20861 0.98255 0.93048 1.02494 1.21313 0.96613 0.95319 1.03804 1.18639 0.90845 0.84420 0.99104 1.84866 1.95146 1.14839 1.32721 1.20336 0.90874 0.97643 1.22439 1.18575 0.83148 0.85497 1.17338 1.84852 1.19227 1.90895 1.31928 0.91233 0.85873 0.86477 0.86605 0.86126 0.75734 0.85860 0.78161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -20.03 11.81 55.49 0.66 -19.37 15 2 C 0.05 1.15 5.50 -17.51 -0.10 1.06 15 3 Si 0.93 18.74 29.55 -169.99 -5.02 13.71 15 4 H -0.27 -5.25 7.11 56.52 0.40 -4.85 15 5 H -0.28 -5.41 7.11 56.52 0.40 -5.01 15 6 H -0.27 -5.23 7.11 56.52 0.40 -4.83 15 7 C -0.31 -8.40 10.17 -14.92 -0.15 -8.55 15 8 H 0.12 2.89 7.83 -52.49 -0.41 2.48 15 9 N -0.15 -4.07 3.74 -11.73 -0.04 -4.11 15 10 N -0.21 -5.80 8.87 33.44 0.30 -5.51 15 11 C 0.00 -0.07 6.97 -82.70 -0.58 -0.65 15 12 C 0.01 0.12 5.89 -104.75 -0.62 -0.50 15 13 C -0.11 -1.87 9.57 -39.24 -0.38 -2.25 15 14 C -0.13 -2.00 10.03 -39.61 -0.40 -2.39 15 15 C -0.13 -1.87 10.03 -39.52 -0.40 -2.26 15 16 C -0.15 -2.52 9.98 -39.48 -0.39 -2.91 15 17 C 0.12 2.37 6.71 -38.82 -0.26 2.10 15 18 O -0.47 -10.14 11.80 -19.16 -0.23 -10.36 15 19 C -0.28 -6.71 10.19 -39.47 -0.40 -7.11 15 20 C 0.12 3.08 7.94 -16.30 -0.13 2.95 15 21 O -0.47 -10.15 13.55 -18.74 -0.25 -10.41 15 22 H 0.28 6.75 8.31 -40.82 -0.34 6.42 15 23 H 0.12 2.01 7.02 -52.49 -0.37 1.64 15 24 H 0.12 1.37 8.06 -52.49 -0.42 0.95 15 25 H 0.12 1.32 8.06 -52.49 -0.42 0.90 15 26 H 0.12 1.74 8.06 -52.48 -0.42 1.32 15 27 H 0.39 7.45 9.06 45.56 0.41 7.86 15 28 H 0.12 2.57 7.32 -52.48 -0.38 2.18 15 29 H 0.37 6.03 9.06 45.56 0.41 6.44 15 LS Contribution 266.41 15.07 4.01 4.01 Total: -1.00 -31.94 266.41 -5.12 -37.06 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: -0.74 Total: 15.50 kcal Atomic # 6 Polarization: -16.73 SS G_CDS: -3.80 Total: -20.52 kcal Atomic # 7 Polarization: -29.90 SS G_CDS: 0.91 Total: -28.99 kcal Atomic # 8 Polarization: -20.29 SS G_CDS: -0.48 Total: -20.77 kcal Atomic # 14 Polarization: 18.74 SS G_CDS: -5.02 Total: 13.71 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -31.94 -5.12 -37.06 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261187386.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.775 kcal (2) G-P(sol) polarization free energy of solvation -31.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds