Wall clock time and date at job start Mon Mar 30 2020 03:48:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31347 * 1 3 3 Si 1.86804 * 119.99776 * 2 1 4 4 H 1.48498 * 109.46693 * 239.99606 * 3 2 1 5 5 H 1.48497 * 109.47311 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47003 * 119.99473 * 3 2 1 7 7 C 1.38916 * 120.00023 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99789 * 180.02562 * 7 2 1 9 9 N 1.37146 * 120.00239 * 0.02562 * 7 2 1 10 10 N 1.40075 * 126.02374 * 0.02562 * 9 7 2 11 11 C 1.31938 * 108.26842 * 179.97438 * 10 9 7 12 12 C 1.48131 * 125.89716 * 179.97438 * 11 10 9 13 13 C 1.39429 * 120.16436 * 179.74647 * 12 11 10 14 14 C 1.37955 * 119.92262 * 179.69829 * 13 12 11 15 15 C 1.38441 * 120.25309 * 0.60251 * 14 13 12 16 16 C 1.38197 * 120.32404 * 359.67796 * 15 14 13 17 17 C 1.38565 * 120.07901 * 0.02562 * 16 15 14 18 18 O 1.35814 * 120.13039 * 180.02562 * 17 16 15 19 19 C 1.41024 * 108.21084 * 0.02562 * 11 10 9 20 20 C 1.35595 * 107.87255 * 359.97438 * 19 11 10 21 21 O 1.35679 * 126.15165 * 179.97438 * 20 19 11 22 22 H 0.97008 * 120.00324 * 0.02562 * 1 2 3 23 23 H 1.08001 * 120.03912 * 0.02562 * 13 12 11 24 24 H 1.07998 * 119.87826 * 180.30165 * 14 13 12 25 25 H 1.07993 * 119.83868 * 179.69667 * 15 14 13 26 26 H 1.08006 * 119.95968 * 180.02562 * 16 15 14 27 27 H 0.96705 * 114.00037 * 269.97910 * 18 17 16 28 28 H 1.08008 * 126.06572 * 180.02562 * 19 11 10 29 29 H 0.96705 * 114.00067 * 270.00556 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2474 1.6178 0.0000 4 1 3.1012 1.6964 -1.2125 5 1 1.2825 2.7465 -0.0006 6 1 3.1011 1.6965 1.2126 7 6 2.0081 -1.2030 0.0005 8 1 3.0881 -1.2030 0.0010 9 7 1.3224 -2.3908 0.0005 10 7 -0.0706 -2.5379 -0.0005 11 6 -0.3504 -3.8272 -0.0007 12 6 -1.7072 -4.4216 -0.0011 13 6 -1.8653 -5.8069 -0.0066 14 6 -3.1312 -6.3551 -0.0007 15 6 -4.2465 -5.5349 -0.0019 16 6 -4.1019 -4.1605 -0.0023 17 6 -2.8367 -3.5953 -0.0021 18 8 -2.6934 -2.2448 -0.0020 19 6 0.8653 -4.5420 0.0008 20 6 1.8781 -3.6404 0.0013 21 8 3.2044 -3.9265 0.0032 22 1 -0.4851 0.8401 -0.0004 23 1 -0.9977 -6.4500 -0.0102 24 1 -3.2528 -7.4282 -0.0001 25 1 -5.2344 -5.9712 -0.0022 26 1 -4.9760 -3.5262 -0.0028 27 1 -2.6514 -1.8536 -0.8854 28 1 0.9709 -5.6169 0.0006 29 1 3.5878 -4.0088 0.8872 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261187386.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:10 Heat of formation + Delta-G solvation = -1.207914 kcal Electronic energy + Delta-G solvation = -17194.000363 eV Core-core repulsion = 14276.601927 eV Total energy + Delta-G solvation = -2917.398437 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.62234 -40.18845 -37.70089 -37.26539 -35.59839 -33.17877 -31.17808 -30.42521 -29.41997 -26.88248 -24.07884 -23.38611 -21.80202 -21.00291 -20.01387 -19.06982 -18.18119 -17.16106 -16.69158 -16.33643 -16.11588 -15.88082 -15.21835 -14.97802 -14.67759 -14.35819 -14.07641 -13.67078 -13.24914 -12.95280 -12.80487 -12.70648 -12.38664 -12.24425 -11.91280 -11.47146 -11.26923 -10.52128 -10.50791 -9.57945 -9.19273 -9.03343 -8.48466 -6.28741 0.24557 0.49150 1.20616 1.36700 1.52019 1.63813 2.06574 2.24237 2.54749 2.98909 3.08884 3.52203 3.61028 4.02722 4.22235 4.25984 4.52828 4.61793 4.72886 5.00879 5.07762 5.14119 5.15824 5.39954 5.54038 5.61814 5.66453 5.92777 6.05079 6.20286 6.52609 6.77677 7.04369 7.44884 7.63109 8.47164 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.027641 B = 0.007670 C = 0.006023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.756616 B = 3649.717836 C = 4647.564114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.001 3.999 3 Si 1.014 2.986 4 H -0.259 1.259 5 H -0.270 1.270 6 H -0.258 1.258 7 C -0.357 4.357 8 H 0.125 0.875 9 N -0.179 5.179 10 N -0.247 5.247 11 C -0.006 4.006 12 C -0.041 4.041 13 C -0.105 4.105 14 C -0.123 4.123 15 C -0.107 4.107 16 C -0.153 4.153 17 C 0.088 3.912 18 O -0.489 6.489 19 C -0.293 4.293 20 C 0.116 3.884 21 O -0.470 6.470 22 H 0.279 0.721 23 H 0.134 0.866 24 H 0.161 0.839 25 H 0.162 0.838 26 H 0.141 0.859 27 H 0.387 0.613 28 H 0.152 0.848 29 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.906 -6.891 0.021 8.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.213 4.213 3 Si 0.833 3.167 4 H -0.184 1.184 5 H -0.194 1.194 6 H -0.182 1.182 7 C -0.489 4.489 8 H 0.142 0.858 9 N 0.043 4.957 10 N -0.083 5.083 11 C -0.157 4.157 12 C -0.044 4.044 13 C -0.125 4.125 14 C -0.141 4.141 15 C -0.125 4.125 16 C -0.171 4.171 17 C 0.042 3.958 18 O -0.299 6.299 19 C -0.325 4.325 20 C -0.053 4.053 21 O -0.273 6.273 22 H 0.089 0.911 23 H 0.152 0.848 24 H 0.179 0.821 25 H 0.180 0.820 26 H 0.159 0.841 27 H 0.244 0.756 28 H 0.169 0.831 29 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -5.523 -5.669 0.018 7.915 hybrid contribution 1.216 0.234 0.045 1.239 sum -4.307 -5.435 0.062 6.935 Atomic orbital electron populations 1.70379 1.07622 1.29258 1.34964 1.26731 0.96674 1.03611 0.94293 0.84731 0.77778 0.74277 0.79925 1.18363 1.19411 1.18172 1.20390 0.92741 0.81636 1.54159 0.85776 1.45899 1.04708 1.04703 1.40363 1.78761 0.87964 1.14705 1.26834 1.20841 0.93401 0.92298 1.09192 1.18689 0.88943 0.94251 1.02480 1.21255 0.99328 0.91993 0.99878 1.21403 0.90930 1.01543 1.00194 1.21431 1.00390 0.91894 0.98821 1.21570 0.95549 0.96879 1.03094 1.19043 0.92303 0.83694 1.00748 1.84835 1.95445 1.16383 1.33226 1.20690 0.90234 0.98891 1.22675 1.18985 0.84484 0.85361 1.16447 1.84760 1.17780 1.90642 1.34098 0.91060 0.84825 0.82108 0.82049 0.84116 0.75648 0.83057 0.75334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -44.26 11.81 21.65 0.26 -44.01 15 2 C 0.00 0.05 5.50 84.93 0.47 0.52 15 3 Si 1.01 39.23 29.55 68.60 2.03 41.26 15 4 H -0.26 -9.63 7.11 99.48 0.71 -8.92 15 5 H -0.27 -10.04 7.11 99.48 0.71 -9.33 15 6 H -0.26 -9.47 7.11 99.48 0.71 -8.77 15 7 C -0.36 -19.79 10.17 84.02 0.85 -18.94 15 8 H 0.12 6.35 7.83 -2.91 -0.02 6.33 15 9 N -0.18 -10.31 3.74 -301.51 -1.13 -11.44 15 10 N -0.25 -14.34 8.87 -48.10 -0.43 -14.77 15 11 C -0.01 -0.32 6.97 42.44 0.30 -0.03 15 12 C -0.04 -1.77 5.89 -19.95 -0.12 -1.89 15 13 C -0.10 -3.50 9.57 22.49 0.22 -3.28 15 14 C -0.12 -3.09 10.03 22.25 0.22 -2.87 15 15 C -0.11 -2.61 10.03 22.31 0.22 -2.38 15 16 C -0.15 -4.71 9.98 22.34 0.22 -4.49 15 17 C 0.09 3.61 6.71 22.76 0.15 3.76 15 18 O -0.49 -22.33 11.80 -91.46 -1.08 -23.41 15 19 C -0.29 -14.19 10.19 22.34 0.23 -13.96 15 20 C 0.12 5.98 7.94 83.31 0.66 6.65 15 21 O -0.47 -20.37 13.55 -89.96 -1.22 -21.58 15 22 H 0.28 14.27 8.31 -92.70 -0.77 13.50 15 23 H 0.13 4.05 7.02 -2.91 -0.02 4.03 15 24 H 0.16 2.70 8.06 -2.91 -0.02 2.68 15 25 H 0.16 2.56 8.06 -2.91 -0.02 2.53 15 26 H 0.14 3.70 8.06 -2.91 -0.02 3.68 15 27 H 0.39 16.18 9.06 -74.05 -0.67 15.51 15 28 H 0.15 6.19 7.32 -2.91 -0.02 6.16 15 29 H 0.39 12.71 9.06 -74.05 -0.67 12.04 15 Total: -1.00 -73.16 266.41 1.73 -71.43 By element: Atomic # 1 Polarization: 39.56 SS G_CDS: -0.13 Total: 39.44 kcal Atomic # 6 Polarization: -40.34 SS G_CDS: 3.43 Total: -36.91 kcal Atomic # 7 Polarization: -68.91 SS G_CDS: -1.30 Total: -70.21 kcal Atomic # 8 Polarization: -42.70 SS G_CDS: -2.30 Total: -45.00 kcal Atomic # 14 Polarization: 39.23 SS G_CDS: 2.03 Total: 41.26 kcal Total: -73.16 1.73 -71.43 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261187386.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.219 kcal (2) G-P(sol) polarization free energy of solvation -73.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds