Wall clock time and date at job start Mon Mar 30 2020 03:48:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31427 * 1 3 3 Si 1.86794 * 119.99666 * 2 1 4 4 H 1.48501 * 109.47424 * 271.57466 * 3 2 1 5 5 H 1.48501 * 109.47427 * 31.57855 * 3 2 1 6 6 H 1.48509 * 109.47014 * 151.57713 * 3 2 1 7 7 C 1.38978 * 119.99755 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00481 * 345.66936 * 7 2 1 9 9 N 1.36888 * 119.99493 * 165.67871 * 7 2 1 10 10 N 1.40099 * 125.98094 * 341.65435 * 9 7 2 11 11 H 0.96992 * 126.02324 * 359.94627 * 10 9 7 12 12 C 1.37650 * 107.95656 * 179.97438 * 10 9 7 13 13 C 1.47501 * 126.02656 * 180.02562 * 12 10 9 14 14 C 1.39792 * 120.09313 * 179.97438 * 13 12 10 15 15 C 1.37719 * 119.90280 * 179.97438 * 14 13 12 16 16 C 1.38983 * 120.09499 * 359.97438 * 15 14 13 17 17 O 1.35754 * 119.90179 * 179.97438 * 16 15 14 18 18 C 1.38986 * 120.19274 * 0.02562 * 16 15 14 19 19 C 1.37715 * 120.09606 * 359.97438 * 18 16 15 20 20 C 1.36555 * 107.94044 * 0.26137 * 12 10 9 21 21 C 1.34764 * 125.98207 * 161.62240 * 9 7 2 22 22 O 1.21902 * 125.96954 * 0.05896 * 21 9 7 23 23 H 0.96991 * 120.00277 * 359.97438 * 1 2 3 24 24 H 1.08004 * 120.05210 * 359.95548 * 14 13 12 25 25 H 1.08002 * 119.95096 * 179.72259 * 15 14 13 26 26 H 0.96708 * 113.99570 * 90.00286 * 17 16 15 27 27 H 1.07997 * 119.94843 * 179.97438 * 18 16 15 28 28 H 1.08000 * 120.04427 * 180.02562 * 19 18 16 29 29 H 1.07995 * 125.99683 * 179.74084 * 20 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3143 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4623 2.0657 -1.3995 5 1 1.4627 2.6428 0.7332 6 1 3.5621 1.4308 0.6664 7 6 2.0091 -1.2036 -0.0005 8 1 1.4944 -2.1244 0.2305 9 7 3.3461 -1.2218 -0.2938 10 7 4.0590 -0.2090 -0.9485 11 1 3.6922 0.6277 -1.2742 12 6 5.3718 -0.6108 -1.0487 13 6 6.4687 0.1556 -1.6692 14 6 7.7621 -0.3736 -1.7024 15 6 8.7833 0.3452 -2.2833 16 6 8.5291 1.5946 -2.8364 17 8 9.5387 2.3000 -3.4075 18 6 7.2446 2.1245 -2.8055 19 6 6.2176 1.4126 -2.2267 20 6 5.4783 -1.8463 -0.4770 21 6 4.2070 -2.2169 -0.0028 22 8 3.9311 -3.2587 0.5669 23 1 -0.4850 0.8399 0.0004 24 1 7.9605 -1.3445 -1.2730 25 1 9.7838 -0.0609 -2.3054 26 1 9.6565 2.1243 -4.3511 27 1 7.0517 3.0960 -3.2361 28 1 5.2197 1.8250 -2.2036 29 1 6.3808 -2.4344 -0.4000 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261189317.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:13 Heat of formation + Delta-G solvation = 38.265331 kcal Electronic energy + Delta-G solvation = -16973.634929 eV Core-core repulsion = 14057.948181 eV Total energy + Delta-G solvation = -2915.686748 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.78651 -39.55919 -36.94977 -35.58807 -33.81200 -31.80591 -31.26327 -29.28068 -29.13408 -25.23878 -23.14946 -22.76991 -20.50183 -19.57942 -19.00478 -18.50668 -17.11663 -15.76540 -15.63596 -15.38968 -14.97936 -14.66643 -14.17554 -13.73164 -13.48977 -13.23568 -12.92827 -12.63981 -12.57178 -12.12463 -11.82700 -11.62787 -11.38683 -10.96834 -10.56346 -10.27187 -9.99550 -9.14215 -9.11800 -8.52100 -8.07977 -7.08859 -6.91898 -4.31117 0.74299 1.26553 2.45364 2.56617 2.61084 2.87617 2.90802 3.63817 3.66256 4.07075 4.23337 4.70036 4.73288 4.82489 4.86378 5.06753 5.22079 5.40709 5.63902 5.85362 6.08019 6.15847 6.28381 6.30473 6.60569 6.64157 6.80139 7.19316 7.38687 7.48310 7.87167 8.14907 8.72158 8.85864 9.74231 10.19544 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.028211 B = 0.007281 C = 0.005897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.265072 B = 3844.451829 C = 4747.011820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.835 5.835 2 C 0.053 3.947 3 Si 0.858 3.142 4 H -0.269 1.269 5 H -0.268 1.268 6 H -0.246 1.246 7 C -0.298 4.298 8 H 0.146 0.854 9 N -0.233 5.233 10 N -0.500 5.500 11 H 0.418 0.582 12 C 0.140 3.860 13 C -0.017 4.017 14 C -0.079 4.079 15 C -0.137 4.137 16 C 0.095 3.905 17 O -0.500 6.500 18 C -0.137 4.137 19 C -0.106 4.106 20 C -0.304 4.304 21 C 0.473 3.527 22 O -0.598 6.598 23 H 0.285 0.715 24 H 0.139 0.861 25 H 0.132 0.868 26 H 0.388 0.612 27 H 0.129 0.871 28 H 0.119 0.881 29 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.428 7.482 -8.242 18.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C -0.157 4.157 3 Si 0.684 3.316 4 H -0.196 1.196 5 H -0.193 1.193 6 H -0.170 1.170 7 C -0.426 4.426 8 H 0.163 0.837 9 N -0.039 5.039 10 N -0.225 5.225 11 H 0.267 0.733 12 C 0.022 3.978 13 C -0.019 4.019 14 C -0.098 4.098 15 C -0.156 4.156 16 C 0.050 3.950 17 O -0.310 6.310 18 C -0.155 4.155 19 C -0.125 4.125 20 C -0.336 4.336 21 C 0.274 3.726 22 O -0.484 6.484 23 H 0.096 0.904 24 H 0.157 0.843 25 H 0.150 0.850 26 H 0.244 0.756 27 H 0.147 0.853 28 H 0.137 0.863 29 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 13.772 7.307 -7.293 17.212 hybrid contribution -0.145 1.448 -0.739 1.632 sum 13.627 8.755 -8.032 18.079 Atomic orbital electron populations 1.69648 1.05769 1.29041 1.42455 1.25290 0.95751 0.98476 0.96154 0.87215 0.81888 0.83484 0.78988 1.19618 1.19338 1.16973 1.19713 0.79552 0.98040 1.45332 0.83722 1.44655 1.06990 1.09826 1.42454 1.45084 1.05316 1.16308 1.55810 0.73268 1.18767 0.82982 0.94535 1.01549 1.18208 0.91837 0.93453 0.98405 1.21056 0.90500 1.00239 0.98011 1.21320 0.99812 0.93832 1.00624 1.18554 0.86858 0.90881 0.98658 1.84793 1.51738 1.66488 1.27971 1.21239 0.91822 1.00683 1.01778 1.21048 0.99076 0.94040 0.98325 1.21762 1.00041 0.97612 1.14235 1.16311 0.85131 0.84576 0.86613 1.90752 1.81648 1.24770 1.51279 0.90395 0.84294 0.84963 0.75630 0.85261 0.86268 0.83218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.45 13.96 55.50 0.77 -21.67 15 2 C 0.05 1.39 5.50 -17.45 -0.10 1.29 15 3 Si 0.86 18.40 24.78 -169.99 -4.21 14.19 15 4 H -0.27 -5.15 6.86 56.52 0.39 -4.77 15 5 H -0.27 -5.65 7.11 56.52 0.40 -5.25 15 6 H -0.25 -5.33 6.68 56.52 0.38 -4.95 15 7 C -0.30 -8.30 10.47 -15.02 -0.16 -8.45 15 8 H 0.15 4.38 8.06 -52.49 -0.42 3.95 15 9 N -0.23 -6.03 3.41 -13.85 -0.05 -6.08 15 10 N -0.50 -10.87 5.22 33.40 0.17 -10.70 15 11 H 0.42 8.40 3.67 -182.61 -0.67 7.73 15 12 C 0.14 2.69 6.97 -82.09 -0.57 2.12 15 13 C -0.02 -0.26 5.88 -104.96 -0.62 -0.88 15 14 C -0.08 -1.00 9.56 -39.19 -0.37 -1.37 15 15 C -0.14 -1.50 9.97 -39.49 -0.39 -1.90 15 16 C 0.10 1.07 6.71 -39.03 -0.26 0.80 15 17 O -0.50 -4.75 13.49 -18.97 -0.26 -5.00 15 18 C -0.14 -1.60 9.97 -39.50 -0.39 -2.00 15 19 C -0.11 -1.46 9.70 -39.20 -0.38 -1.84 15 20 C -0.30 -6.37 10.20 -39.28 -0.40 -6.77 15 21 C 0.47 12.43 7.82 -15.35 -0.12 12.31 15 22 O -0.60 -17.77 17.86 5.01 0.09 -17.68 15 23 H 0.29 6.96 8.31 -40.82 -0.34 6.62 15 24 H 0.14 1.55 6.97 -52.48 -0.37 1.18 15 25 H 0.13 1.14 8.06 -52.49 -0.42 0.72 15 26 H 0.39 1.75 9.06 45.56 0.41 2.16 15 27 H 0.13 1.26 8.06 -52.49 -0.42 0.83 15 28 H 0.12 1.59 7.18 -52.49 -0.38 1.21 15 29 H 0.15 2.64 7.23 -52.49 -0.38 2.26 15 LS Contribution 258.72 15.07 3.90 3.90 Total: -1.00 -32.85 258.72 -5.17 -38.01 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: -1.82 Total: 11.71 kcal Atomic # 6 Polarization: -2.91 SS G_CDS: -3.77 Total: -6.68 kcal Atomic # 7 Polarization: -39.35 SS G_CDS: 0.90 Total: -38.45 kcal Atomic # 8 Polarization: -22.52 SS G_CDS: -0.17 Total: -22.68 kcal Atomic # 14 Polarization: 18.40 SS G_CDS: -4.21 Total: 14.19 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -32.85 -5.17 -38.01 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261189317.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.278 kcal (2) G-P(sol) polarization free energy of solvation -32.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds