Wall clock time and date at job start Mon Mar 30 2020 03:48:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31427 * 1 3 3 Si 1.86794 * 119.99666 * 2 1 4 4 H 1.48501 * 109.47424 * 271.57466 * 3 2 1 5 5 H 1.48501 * 109.47427 * 31.57855 * 3 2 1 6 6 H 1.48509 * 109.47014 * 151.57713 * 3 2 1 7 7 C 1.38978 * 119.99755 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00481 * 345.66936 * 7 2 1 9 9 N 1.36888 * 119.99493 * 165.67871 * 7 2 1 10 10 N 1.40099 * 125.98094 * 341.65435 * 9 7 2 11 11 H 0.96992 * 126.02324 * 359.94627 * 10 9 7 12 12 C 1.37650 * 107.95656 * 179.97438 * 10 9 7 13 13 C 1.47501 * 126.02656 * 180.02562 * 12 10 9 14 14 C 1.39792 * 120.09313 * 179.97438 * 13 12 10 15 15 C 1.37719 * 119.90280 * 179.97438 * 14 13 12 16 16 C 1.38983 * 120.09499 * 359.97438 * 15 14 13 17 17 O 1.35754 * 119.90179 * 179.97438 * 16 15 14 18 18 C 1.38986 * 120.19274 * 0.02562 * 16 15 14 19 19 C 1.37715 * 120.09606 * 359.97438 * 18 16 15 20 20 C 1.36555 * 107.94044 * 0.26137 * 12 10 9 21 21 C 1.34764 * 125.98207 * 161.62240 * 9 7 2 22 22 O 1.21902 * 125.96954 * 0.05896 * 21 9 7 23 23 H 0.96991 * 120.00277 * 359.97438 * 1 2 3 24 24 H 1.08004 * 120.05210 * 359.95548 * 14 13 12 25 25 H 1.08002 * 119.95096 * 179.72259 * 15 14 13 26 26 H 0.96708 * 113.99570 * 90.00286 * 17 16 15 27 27 H 1.07997 * 119.94843 * 179.97438 * 18 16 15 28 28 H 1.08000 * 120.04427 * 180.02562 * 19 18 16 29 29 H 1.07995 * 125.99683 * 179.74084 * 20 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3143 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4623 2.0657 -1.3995 5 1 1.4627 2.6428 0.7332 6 1 3.5621 1.4308 0.6664 7 6 2.0091 -1.2036 -0.0005 8 1 1.4944 -2.1244 0.2305 9 7 3.3461 -1.2218 -0.2938 10 7 4.0590 -0.2090 -0.9485 11 1 3.6922 0.6277 -1.2742 12 6 5.3718 -0.6108 -1.0487 13 6 6.4687 0.1556 -1.6692 14 6 7.7621 -0.3736 -1.7024 15 6 8.7833 0.3452 -2.2833 16 6 8.5291 1.5946 -2.8364 17 8 9.5387 2.3000 -3.4075 18 6 7.2446 2.1245 -2.8055 19 6 6.2176 1.4126 -2.2267 20 6 5.4783 -1.8463 -0.4770 21 6 4.2070 -2.2169 -0.0028 22 8 3.9311 -3.2587 0.5669 23 1 -0.4850 0.8399 0.0004 24 1 7.9605 -1.3445 -1.2730 25 1 9.7838 -0.0609 -2.3054 26 1 9.6565 2.1243 -4.3511 27 1 7.0517 3.0960 -3.2361 28 1 5.2197 1.8250 -2.2036 29 1 6.3808 -2.4344 -0.4000 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261189317.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:13 Heat of formation + Delta-G solvation = 12.546063 kcal Electronic energy + Delta-G solvation = -16974.750200 eV Core-core repulsion = 14057.948181 eV Total energy + Delta-G solvation = -2916.802019 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.54715 -40.53482 -38.08994 -37.40476 -35.65443 -33.50238 -32.28086 -30.89879 -30.56054 -27.01728 -24.42144 -23.79224 -21.90581 -21.41899 -20.83114 -19.36452 -18.74339 -17.13133 -17.08358 -16.60733 -16.44433 -16.25043 -15.70561 -15.07935 -14.83142 -14.76419 -14.55519 -14.19211 -13.91240 -13.51549 -13.16155 -12.98927 -12.84586 -12.76899 -12.03413 -11.73766 -11.38072 -10.74005 -10.59115 -10.04489 -9.48580 -8.87575 -8.84105 -6.42618 -0.37503 0.36219 0.81618 0.88939 1.04292 1.15388 1.24834 1.84443 2.22352 2.72912 2.87331 3.15802 3.27513 3.50498 3.84496 3.96241 4.29871 4.40449 4.41795 4.77222 4.81676 4.99975 5.06831 5.22028 5.29623 5.39668 5.49720 5.53534 5.76795 5.99623 6.18005 6.74582 6.89760 6.92743 7.74014 8.29182 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.028211 B = 0.007281 C = 0.005897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.265072 B = 3844.451829 C = 4747.011820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.013 3.987 3 Si 0.921 3.079 4 H -0.222 1.222 5 H -0.257 1.257 6 H -0.249 1.249 7 C -0.342 4.342 8 H 0.090 0.910 9 N -0.256 5.256 10 N -0.495 5.495 11 H 0.427 0.573 12 C 0.188 3.812 13 C -0.057 4.057 14 C -0.066 4.066 15 C -0.138 4.138 16 C 0.120 3.880 17 O -0.505 6.505 18 C -0.142 4.142 19 C -0.103 4.103 20 C -0.322 4.322 21 C 0.448 3.552 22 O -0.652 6.652 23 H 0.294 0.706 24 H 0.152 0.848 25 H 0.161 0.839 26 H 0.415 0.585 27 H 0.153 0.847 28 H 0.123 0.877 29 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.457 10.927 -10.365 23.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.193 4.193 3 Si 0.742 3.258 4 H -0.146 1.146 5 H -0.181 1.181 6 H -0.173 1.173 7 C -0.470 4.470 8 H 0.108 0.892 9 N -0.062 5.062 10 N -0.222 5.222 11 H 0.278 0.722 12 C 0.069 3.931 13 C -0.059 4.059 14 C -0.085 4.085 15 C -0.156 4.156 16 C 0.074 3.926 17 O -0.319 6.319 18 C -0.161 4.161 19 C -0.122 4.122 20 C -0.353 4.353 21 C 0.250 3.750 22 O -0.543 6.543 23 H 0.105 0.895 24 H 0.170 0.830 25 H 0.178 0.822 26 H 0.275 0.725 27 H 0.170 0.830 28 H 0.140 0.860 29 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 17.809 10.769 -9.474 22.867 hybrid contribution -1.083 0.460 -0.256 1.204 sum 16.726 11.229 -9.730 22.372 Atomic orbital electron populations 1.69742 1.07475 1.30723 1.43443 1.26120 0.96580 1.02016 0.94602 0.86244 0.80019 0.77916 0.81660 1.14639 1.18146 1.17336 1.19198 0.80853 0.97312 1.49645 0.89189 1.44330 1.06446 1.11088 1.44301 1.45011 1.05722 1.15702 1.55768 0.72192 1.19400 0.82459 0.93646 0.97564 1.18155 0.91366 0.94663 1.01743 1.21273 0.89660 1.00764 0.96815 1.21598 1.00602 0.93659 0.99778 1.18725 0.86881 0.90314 0.96643 1.84730 1.50820 1.66183 1.30184 1.21467 0.91526 1.01533 1.01540 1.21179 1.00008 0.93397 0.97594 1.21836 0.98729 0.99060 1.15678 1.17190 0.87033 0.84223 0.86571 1.90675 1.82982 1.27084 1.53552 0.89509 0.83002 0.82161 0.72496 0.82971 0.85951 0.80009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -49.47 13.96 21.67 0.30 -49.17 15 2 C 0.01 0.72 5.50 84.93 0.47 1.18 15 3 Si 0.92 37.29 24.78 68.60 1.70 38.99 15 4 H -0.22 -7.31 6.86 99.48 0.68 -6.63 15 5 H -0.26 -9.93 7.11 99.48 0.71 -9.22 15 6 H -0.25 -10.16 6.68 99.48 0.66 -9.50 15 7 C -0.34 -20.56 10.47 84.08 0.88 -19.68 15 8 H 0.09 6.15 8.06 -2.91 -0.02 6.13 15 9 N -0.26 -13.83 3.41 -315.86 -1.08 -14.91 15 10 N -0.50 -21.11 5.22 -48.24 -0.25 -21.36 15 11 H 0.43 16.19 3.67 -213.33 -0.78 15.41 15 12 C 0.19 6.87 6.97 40.28 0.28 7.15 15 13 C -0.06 -1.53 5.88 -20.09 -0.12 -1.65 15 14 C -0.07 -1.37 9.56 22.52 0.22 -1.15 15 15 C -0.14 -2.24 9.97 22.33 0.22 -2.02 15 16 C 0.12 1.97 6.71 22.63 0.15 2.12 15 17 O -0.51 -6.48 13.49 -90.80 -1.22 -7.70 15 18 C -0.14 -2.55 9.97 22.33 0.22 -2.33 15 19 C -0.10 -2.36 9.70 22.52 0.22 -2.15 15 20 C -0.32 -13.42 10.20 22.47 0.23 -13.19 15 21 C 0.45 24.70 7.82 84.83 0.66 25.36 15 22 O -0.65 -41.59 17.86 -5.00 -0.09 -41.68 15 23 H 0.29 14.76 8.31 -92.71 -0.77 13.99 15 24 H 0.15 2.72 6.97 -2.91 -0.02 2.70 15 25 H 0.16 1.76 8.06 -2.91 -0.02 1.73 15 26 H 0.41 1.13 9.06 -74.05 -0.67 0.45 15 27 H 0.15 2.05 8.06 -2.91 -0.02 2.02 15 28 H 0.12 2.70 7.18 -2.91 -0.02 2.68 15 29 H 0.18 6.14 7.23 -2.91 -0.02 6.12 15 Total: -1.00 -78.77 258.72 2.49 -76.28 By element: Atomic # 1 Polarization: 26.20 SS G_CDS: -0.30 Total: 25.90 kcal Atomic # 6 Polarization: -9.79 SS G_CDS: 3.43 Total: -6.36 kcal Atomic # 7 Polarization: -84.40 SS G_CDS: -1.03 Total: -85.43 kcal Atomic # 8 Polarization: -48.07 SS G_CDS: -1.31 Total: -49.38 kcal Atomic # 14 Polarization: 37.29 SS G_CDS: 1.70 Total: 38.99 kcal Total: -78.77 2.49 -76.28 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261189317.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.827 kcal (2) G-P(sol) polarization free energy of solvation -78.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds