Wall clock time and date at job start Mon Mar 30 2020 03:48:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31347 * 1 3 3 Si 1.86799 * 120.00198 * 2 1 4 4 H 1.48502 * 109.46907 * 270.00056 * 3 2 1 5 5 H 1.48500 * 109.47091 * 30.00119 * 3 2 1 6 6 H 1.48497 * 109.47094 * 150.00268 * 3 2 1 7 7 C 1.38919 * 119.99862 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00242 * 180.02562 * 7 2 1 9 9 N 1.37156 * 120.00007 * 359.97438 * 7 2 1 10 10 N 1.40075 * 126.02607 * 0.24535 * 9 7 2 11 11 C 1.31935 * 108.26781 * 180.17436 * 10 9 7 12 12 C 1.48166 * 125.89346 * 179.88690 * 11 10 9 13 13 C 1.39508 * 120.07612 * 179.41848 * 12 11 10 14 14 C 1.37848 * 119.92682 * 179.71806 * 13 12 11 15 15 C 1.38893 * 120.07206 * 0.55133 * 14 13 12 16 16 O 1.35844 * 119.92171 * 179.74209 * 15 14 13 17 17 C 1.38884 * 120.14948 * 359.72487 * 15 14 13 18 18 C 1.37850 * 120.07560 * 359.97438 * 17 15 14 19 19 C 1.41014 * 108.21281 * 359.61916 * 11 10 9 20 20 C 1.35596 * 107.87331 * 0.24422 * 19 11 10 21 21 O 1.35685 * 126.15216 * 180.02562 * 20 19 11 22 22 H 0.97004 * 119.99962 * 359.97438 * 1 2 3 23 23 H 1.08003 * 120.03620 * 359.96989 * 13 12 11 24 24 H 1.07997 * 119.96810 * 180.24811 * 14 13 12 25 25 H 0.96705 * 114.00268 * 269.97415 * 16 15 14 26 26 H 1.07994 * 119.95956 * 179.97438 * 17 15 14 27 27 H 1.07999 * 120.04024 * 180.02562 * 18 17 15 28 28 H 1.08001 * 126.06359 * 180.21999 * 19 11 10 29 29 H 0.96695 * 113.99973 * 89.97278 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2475 1.6177 0.0000 4 1 2.4950 2.0463 -1.4001 5 1 1.4450 2.6526 0.7001 6 1 3.5451 1.4401 0.7000 7 6 2.0080 -1.2031 0.0005 8 1 3.0880 -1.2032 0.0010 9 7 1.3222 -2.3909 0.0016 10 7 -0.0708 -2.5379 -0.0026 11 6 -0.3506 -3.8272 0.0039 12 6 -1.7078 -4.4216 0.0048 13 6 -1.8640 -5.8079 -0.0002 14 6 -3.1281 -6.3576 0.0065 15 6 -4.2456 -5.5329 0.0067 16 8 -5.4900 -6.0779 0.0080 17 6 -4.0938 -4.1524 0.0059 18 6 -2.8325 -3.5961 0.0054 19 6 0.8650 -4.5420 0.0036 20 6 1.8779 -3.6405 0.0022 21 8 3.2042 -3.9268 0.0010 22 1 -0.4850 0.8401 0.0004 23 1 -0.9953 -6.4497 -0.0052 24 1 -3.2497 -7.4307 0.0067 25 1 -5.8511 -6.2360 -0.8750 26 1 -4.9649 -3.5140 0.0056 27 1 -2.7151 -2.5225 0.0052 28 1 0.9705 -5.6169 0.0047 29 1 3.5876 -4.0105 -0.8827 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261191949.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:12 Heat of formation + Delta-G solvation = 17.236098 kcal Electronic energy + Delta-G solvation = -16738.196308 eV Core-core repulsion = 13821.597663 eV Total energy + Delta-G solvation = -2916.598644 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.85012 -39.00442 -36.48562 -35.83134 -33.72446 -31.10030 -30.60082 -28.75873 -27.62083 -25.01562 -22.44565 -22.28004 -20.07715 -19.43907 -18.24984 -18.03273 -16.65167 -15.53613 -15.17683 -14.88162 -14.73191 -14.40504 -13.59412 -13.37448 -13.11072 -12.85430 -12.64892 -12.06558 -11.92198 -11.62313 -11.33693 -11.19741 -10.97819 -10.71628 -10.26231 -10.04385 -9.72531 -8.83739 -8.74148 -8.55669 -7.49493 -7.27650 -6.72223 -4.39227 1.52023 1.84044 2.84379 2.98736 3.04010 3.30034 3.66488 3.70757 4.29341 4.46621 4.69334 4.85556 5.16505 5.33281 5.35980 5.82360 5.89634 5.97864 6.23693 6.31522 6.52416 6.77076 6.81720 6.85759 6.95818 7.11361 7.26178 7.32729 7.60162 7.91225 7.97497 8.18459 8.54570 9.23645 9.45085 10.23102 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.029766 B = 0.006141 C = 0.005105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.458869 B = 4558.413093 C = 5483.893591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.764 5.764 2 C 0.045 3.955 3 Si 0.937 3.063 4 H -0.269 1.269 5 H -0.274 1.274 6 H -0.262 1.262 7 C -0.312 4.312 8 H 0.120 0.880 9 N -0.143 5.143 10 N -0.232 5.232 11 C -0.002 4.002 12 C 0.031 3.969 13 C -0.105 4.105 14 C -0.143 4.143 15 C 0.073 3.927 16 O -0.503 6.503 17 C -0.142 4.142 18 C -0.092 4.092 19 C -0.277 4.277 20 C 0.125 3.875 21 O -0.468 6.468 22 H 0.278 0.722 23 H 0.126 0.874 24 H 0.122 0.878 25 H 0.381 0.619 26 H 0.122 0.878 27 H 0.137 0.863 28 H 0.125 0.875 29 H 0.367 0.633 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.493 -5.515 -3.192 7.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.390 5.390 2 C -0.173 4.173 3 Si 0.761 3.239 4 H -0.194 1.194 5 H -0.199 1.199 6 H -0.186 1.186 7 C -0.446 4.446 8 H 0.138 0.862 9 N 0.079 4.921 10 N -0.069 5.069 11 C -0.151 4.151 12 C 0.029 3.971 13 C -0.125 4.125 14 C -0.162 4.162 15 C 0.028 3.972 16 O -0.312 6.312 17 C -0.161 4.161 18 C -0.111 4.111 19 C -0.309 4.309 20 C -0.043 4.043 21 O -0.268 6.268 22 H 0.088 0.912 23 H 0.144 0.856 24 H 0.140 0.860 25 H 0.235 0.765 26 H 0.140 0.860 27 H 0.155 0.845 28 H 0.143 0.857 29 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -4.048 -4.217 -1.949 6.162 hybrid contribution 0.878 -0.095 -1.013 1.344 sum -3.170 -4.312 -2.962 6.116 Atomic orbital electron populations 1.70208 1.06199 1.28386 1.34232 1.25682 0.95788 1.00463 0.95328 0.85771 0.79551 0.79506 0.79109 1.19432 1.19877 1.18631 1.20026 0.92162 0.80786 1.51658 0.86216 1.45508 1.04090 1.03945 1.38522 1.78627 0.88272 1.13311 1.26714 1.20172 0.91493 0.92609 1.10830 1.18001 0.90318 0.92042 0.96762 1.20982 0.96592 0.94177 1.00703 1.21159 0.92007 0.99520 1.03496 1.18451 0.83879 0.90849 1.03988 1.84812 1.29643 1.83764 1.33013 1.21278 0.97804 0.94012 1.02983 1.21271 0.90663 1.01008 0.98143 1.20365 0.90812 0.97750 1.22002 1.18559 0.83234 0.85365 1.17154 1.84857 1.19127 1.90839 1.31985 0.91186 0.85622 0.86020 0.76490 0.85984 0.84503 0.85671 0.78053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -20.30 11.81 55.49 0.66 -19.65 15 2 C 0.05 1.14 5.50 -17.51 -0.10 1.04 15 3 Si 0.94 18.48 29.55 -169.99 -5.02 13.46 15 4 H -0.27 -5.19 7.11 56.52 0.40 -4.78 15 5 H -0.27 -5.33 7.11 56.52 0.40 -4.93 15 6 H -0.26 -5.04 7.11 56.52 0.40 -4.64 15 7 C -0.31 -8.21 10.17 -14.92 -0.15 -8.36 15 8 H 0.12 2.91 7.83 -52.49 -0.41 2.50 15 9 N -0.14 -3.91 3.74 -11.73 -0.04 -3.96 15 10 N -0.23 -6.40 10.05 33.45 0.34 -6.06 15 11 C 0.00 -0.05 6.99 -82.69 -0.58 -0.63 15 12 C 0.03 0.64 5.88 -104.87 -0.62 0.03 15 13 C -0.10 -1.84 9.57 -39.25 -0.38 -2.22 15 14 C -0.14 -2.22 9.97 -39.48 -0.39 -2.62 15 15 C 0.07 1.14 6.71 -39.10 -0.26 0.88 15 16 O -0.50 -6.75 13.49 -19.25 -0.26 -7.01 15 17 C -0.14 -2.38 9.97 -39.48 -0.39 -2.78 15 18 C -0.09 -1.81 9.68 -39.25 -0.38 -2.19 15 19 C -0.28 -6.47 10.19 -39.47 -0.40 -6.87 15 20 C 0.12 3.08 7.94 -16.30 -0.13 2.95 15 21 O -0.47 -9.89 13.55 -18.76 -0.25 -10.15 15 22 H 0.28 6.71 8.31 -40.82 -0.34 6.37 15 23 H 0.13 2.01 7.01 -52.48 -0.37 1.64 15 24 H 0.12 1.57 8.06 -52.49 -0.42 1.15 15 25 H 0.38 3.15 9.06 45.56 0.41 3.56 15 26 H 0.12 1.78 8.06 -52.49 -0.42 1.36 15 27 H 0.14 2.91 7.84 -52.49 -0.41 2.50 15 28 H 0.13 2.53 7.31 -52.49 -0.38 2.14 15 29 H 0.37 5.81 9.06 45.56 0.41 6.22 15 LS Contribution 268.62 15.07 4.05 4.05 Total: -1.00 -31.94 268.62 -5.05 -36.99 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: -0.73 Total: 13.08 kcal Atomic # 6 Polarization: -16.99 SS G_CDS: -3.78 Total: -20.77 kcal Atomic # 7 Polarization: -30.61 SS G_CDS: 0.95 Total: -29.66 kcal Atomic # 8 Polarization: -16.64 SS G_CDS: -0.51 Total: -17.15 kcal Atomic # 14 Polarization: 18.48 SS G_CDS: -5.02 Total: 13.46 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -31.94 -5.05 -36.99 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261191949.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.224 kcal (2) G-P(sol) polarization free energy of solvation -31.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.987 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds