Wall clock time and date at job start Mon Mar 30 2020 03:48:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31347 * 1 3 3 Si 1.86799 * 120.00198 * 2 1 4 4 H 1.48502 * 109.46907 * 270.00056 * 3 2 1 5 5 H 1.48500 * 109.47091 * 30.00119 * 3 2 1 6 6 H 1.48497 * 109.47094 * 150.00268 * 3 2 1 7 7 C 1.38919 * 119.99862 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00242 * 180.02562 * 7 2 1 9 9 N 1.37156 * 120.00007 * 359.97438 * 7 2 1 10 10 N 1.40075 * 126.02607 * 0.24535 * 9 7 2 11 11 C 1.31935 * 108.26781 * 180.17436 * 10 9 7 12 12 C 1.48166 * 125.89346 * 179.88690 * 11 10 9 13 13 C 1.39508 * 120.07612 * 179.41848 * 12 11 10 14 14 C 1.37848 * 119.92682 * 179.71806 * 13 12 11 15 15 C 1.38893 * 120.07206 * 0.55133 * 14 13 12 16 16 O 1.35844 * 119.92171 * 179.74209 * 15 14 13 17 17 C 1.38884 * 120.14948 * 359.72487 * 15 14 13 18 18 C 1.37850 * 120.07560 * 359.97438 * 17 15 14 19 19 C 1.41014 * 108.21281 * 359.61916 * 11 10 9 20 20 C 1.35596 * 107.87331 * 0.24422 * 19 11 10 21 21 O 1.35685 * 126.15216 * 180.02562 * 20 19 11 22 22 H 0.97004 * 119.99962 * 359.97438 * 1 2 3 23 23 H 1.08003 * 120.03620 * 359.96989 * 13 12 11 24 24 H 1.07997 * 119.96810 * 180.24811 * 14 13 12 25 25 H 0.96705 * 114.00268 * 269.97415 * 16 15 14 26 26 H 1.07994 * 119.95956 * 179.97438 * 17 15 14 27 27 H 1.07999 * 120.04024 * 180.02562 * 18 17 15 28 28 H 1.08001 * 126.06359 * 180.21999 * 19 11 10 29 29 H 0.96695 * 113.99973 * 89.97278 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2475 1.6177 0.0000 4 1 2.4950 2.0463 -1.4001 5 1 1.4450 2.6526 0.7001 6 1 3.5451 1.4401 0.7000 7 6 2.0080 -1.2031 0.0005 8 1 3.0880 -1.2032 0.0010 9 7 1.3222 -2.3909 0.0016 10 7 -0.0708 -2.5379 -0.0026 11 6 -0.3506 -3.8272 0.0039 12 6 -1.7078 -4.4216 0.0048 13 6 -1.8640 -5.8079 -0.0002 14 6 -3.1281 -6.3576 0.0065 15 6 -4.2456 -5.5329 0.0067 16 8 -5.4900 -6.0779 0.0080 17 6 -4.0938 -4.1524 0.0059 18 6 -2.8325 -3.5961 0.0054 19 6 0.8650 -4.5420 0.0036 20 6 1.8779 -3.6405 0.0022 21 8 3.2042 -3.9268 0.0010 22 1 -0.4850 0.8401 0.0004 23 1 -0.9953 -6.4497 -0.0052 24 1 -3.2497 -7.4307 0.0067 25 1 -5.8511 -6.2360 -0.8750 26 1 -4.9649 -3.5140 0.0056 27 1 -2.7151 -2.5225 0.0052 28 1 0.9705 -5.6169 0.0047 29 1 3.5876 -4.0105 -0.8827 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261191949.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:11 Heat of formation + Delta-G solvation = -7.856026 kcal Electronic energy + Delta-G solvation = -16739.284384 eV Core-core repulsion = 13821.597663 eV Total energy + Delta-G solvation = -2917.686720 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.64601 -40.35066 -37.93999 -37.37509 -35.54547 -32.84648 -31.96814 -30.32639 -29.46042 -26.83503 -23.97091 -23.68060 -21.82668 -21.11734 -20.05857 -19.24827 -18.41795 -17.18830 -16.64242 -16.31560 -16.15846 -16.00180 -15.35582 -14.92158 -14.70763 -14.37416 -14.22813 -13.77671 -13.41094 -13.05873 -12.86310 -12.75969 -12.65934 -12.26253 -11.93898 -11.45008 -11.31783 -10.68487 -10.46224 -9.90179 -9.22315 -9.03634 -8.56110 -6.34096 0.11866 0.48587 1.16502 1.35650 1.53122 1.61776 2.03014 2.11744 2.49950 2.94652 3.07376 3.38071 3.50572 3.97317 4.12567 4.21341 4.47860 4.52804 4.72776 4.96253 5.02683 5.08017 5.17045 5.33468 5.44905 5.49872 5.65181 5.90965 5.96388 6.14504 6.50187 6.74745 6.94861 7.40771 7.56776 8.42162 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.029766 B = 0.006141 C = 0.005105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.458869 B = 4558.413093 C = 5483.893591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C -0.001 4.001 3 Si 1.017 2.983 4 H -0.260 1.260 5 H -0.271 1.271 6 H -0.252 1.252 7 C -0.352 4.352 8 H 0.129 0.871 9 N -0.175 5.175 10 N -0.277 5.277 11 C -0.003 4.003 12 C -0.010 4.010 13 C -0.095 4.095 14 C -0.136 4.136 15 C 0.096 3.904 16 O -0.504 6.504 17 C -0.145 4.145 18 C -0.105 4.105 19 C -0.286 4.286 20 C 0.122 3.878 21 O -0.469 6.469 22 H 0.280 0.720 23 H 0.143 0.857 24 H 0.159 0.841 25 H 0.409 0.591 26 H 0.141 0.859 27 H 0.106 0.894 28 H 0.157 0.843 29 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.126 -7.232 -3.444 9.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.214 4.214 3 Si 0.836 3.164 4 H -0.184 1.184 5 H -0.196 1.196 6 H -0.176 1.176 7 C -0.485 4.485 8 H 0.147 0.853 9 N 0.047 4.953 10 N -0.113 5.113 11 C -0.154 4.154 12 C -0.012 4.012 13 C -0.115 4.115 14 C -0.154 4.154 15 C 0.051 3.949 16 O -0.317 6.317 17 C -0.164 4.164 18 C -0.125 4.125 19 C -0.318 4.318 20 C -0.048 4.048 21 O -0.272 6.272 22 H 0.090 0.910 23 H 0.160 0.840 24 H 0.177 0.823 25 H 0.268 0.732 26 H 0.159 0.841 27 H 0.124 0.876 28 H 0.175 0.825 29 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -4.673 -5.938 -2.235 7.880 hybrid contribution 0.900 0.172 -0.958 1.325 sum -3.774 -5.766 -3.193 7.595 Atomic orbital electron populations 1.70355 1.08084 1.29428 1.35998 1.26805 0.96585 1.03981 0.93988 0.84620 0.78172 0.74142 0.79491 1.18414 1.19553 1.17581 1.20508 0.92882 0.81520 1.53541 0.85321 1.45758 1.04212 1.04895 1.40413 1.78531 0.89149 1.15407 1.28243 1.20873 0.93696 0.92020 1.08802 1.18129 0.88836 0.93772 1.00464 1.21162 0.98355 0.92603 0.99340 1.21497 0.90771 1.01334 1.01810 1.18494 0.85055 0.90250 1.01132 1.84745 1.28276 1.83205 1.35441 1.21419 0.96991 0.95265 1.02678 1.21104 0.92103 0.99641 0.99633 1.20739 0.89979 0.99113 1.21953 1.18981 0.84626 0.85149 1.16009 1.84766 1.17614 1.90558 1.34250 0.90975 0.83962 0.82341 0.73177 0.84114 0.87580 0.82544 0.75096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -45.38 11.81 21.65 0.26 -45.12 15 2 C 0.00 -0.04 5.50 84.93 0.47 0.43 15 3 Si 1.02 38.69 29.55 68.60 2.03 40.72 15 4 H -0.26 -9.37 7.11 99.48 0.71 -8.66 15 5 H -0.27 -10.02 7.11 99.48 0.71 -9.32 15 6 H -0.25 -9.06 7.11 99.48 0.71 -8.35 15 7 C -0.35 -19.22 10.17 84.02 0.85 -18.37 15 8 H 0.13 6.43 7.83 -2.91 -0.02 6.41 15 9 N -0.18 -9.92 3.74 -301.50 -1.13 -11.05 15 10 N -0.28 -16.05 10.05 -48.09 -0.48 -16.53 15 11 C 0.00 -0.16 6.99 42.45 0.30 0.14 15 12 C -0.01 -0.42 5.88 -20.03 -0.12 -0.54 15 13 C -0.10 -3.13 9.57 22.48 0.22 -2.91 15 14 C -0.14 -3.68 9.97 22.33 0.22 -3.45 15 15 C 0.10 2.67 6.71 22.58 0.15 2.82 15 16 O -0.50 -11.15 13.49 -91.80 -1.24 -12.39 15 17 C -0.15 -4.66 9.97 22.33 0.22 -4.44 15 18 C -0.11 -4.26 9.68 22.49 0.22 -4.05 15 19 C -0.29 -13.37 10.19 22.34 0.23 -13.14 15 20 C 0.12 6.08 7.94 83.31 0.66 6.74 15 21 O -0.47 -19.59 13.55 -90.03 -1.22 -20.81 15 22 H 0.28 14.29 8.31 -92.71 -0.77 13.52 15 23 H 0.14 4.12 7.01 -2.91 -0.02 4.10 15 24 H 0.16 3.17 8.06 -2.91 -0.02 3.15 15 25 H 0.41 4.67 9.06 -74.05 -0.67 4.00 15 26 H 0.14 3.88 8.06 -2.91 -0.02 3.86 15 27 H 0.11 4.87 7.84 -2.91 -0.02 4.85 15 28 H 0.16 6.06 7.31 -2.91 -0.02 6.04 15 29 H 0.39 12.06 9.06 -74.06 -0.67 11.39 15 Total: -1.00 -72.48 268.62 1.51 -70.97 By element: Atomic # 1 Polarization: 31.11 SS G_CDS: -0.13 Total: 30.98 kcal Atomic # 6 Polarization: -40.18 SS G_CDS: 3.42 Total: -36.76 kcal Atomic # 7 Polarization: -71.35 SS G_CDS: -1.35 Total: -72.70 kcal Atomic # 8 Polarization: -30.74 SS G_CDS: -2.46 Total: -33.20 kcal Atomic # 14 Polarization: 38.69 SS G_CDS: 2.03 Total: 40.72 kcal Total: -72.48 1.51 -70.97 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261191949.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.114 kcal (2) G-P(sol) polarization free energy of solvation -72.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds