Wall clock time and date at job start Mon Mar 30 2020 03:32:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86797 * 120.00072 * 2 1 4 4 H 1.48504 * 109.47074 * 269.99994 * 3 2 1 5 5 H 1.48498 * 109.47070 * 29.99927 * 3 2 1 6 6 H 1.48499 * 109.47373 * 150.00156 * 3 2 1 7 7 C 1.37884 * 119.99992 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00176 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99762 * 179.97438 * 7 2 1 10 10 O 1.42907 * 109.46942 * 180.02562 * 9 7 2 11 11 C 1.42903 * 113.99838 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.46726 * 179.97438 * 11 10 9 13 13 S 1.81002 * 109.47004 * 180.02562 * 12 11 10 14 14 C 1.76193 * 100.00049 * 180.02562 * 13 12 11 15 15 N 1.30308 * 126.17159 * 0.02562 * 14 13 12 16 16 N 1.26104 * 117.60720 * 179.97438 * 15 14 13 17 17 C 1.29328 * 117.97298 * 0.02562 * 16 15 14 18 18 S 1.76479 * 107.87951 * 359.75612 * 17 16 15 19 19 H 0.97000 * 120.00168 * 0.02562 * 1 2 3 20 20 H 1.09004 * 109.47569 * 60.00186 * 9 7 2 21 21 H 1.08996 * 109.47305 * 299.99830 * 9 7 2 22 22 H 1.09001 * 109.46938 * 60.00058 * 11 10 9 23 23 H 1.08992 * 109.47388 * 300.00049 * 11 10 9 24 24 H 1.09002 * 109.47398 * 300.00244 * 12 11 10 25 25 H 1.09001 * 109.47194 * 60.00425 * 12 11 10 26 26 H 1.07998 * 126.05836 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 8 3.9879 -2.5414 -0.0022 11 6 5.4124 -2.6542 -0.0022 12 6 5.8069 -4.1325 -0.0028 13 16 7.6113 -4.2754 -0.0021 14 6 7.7792 -6.0293 -0.0037 15 7 6.8054 -6.8952 -0.0054 16 7 7.1113 -8.1186 -0.0068 17 6 8.3665 -8.4301 -0.0059 18 16 9.2969 -6.9305 -0.0100 19 1 -0.4850 0.8400 -0.0004 20 1 3.8752 -0.6804 0.8889 21 1 3.8745 -0.6801 -0.8911 22 1 5.8151 -2.1713 0.8882 23 1 5.8152 -2.1699 -0.8917 24 1 5.4041 -4.6164 0.8870 25 1 5.4042 -4.6156 -0.8930 26 1 8.7732 -9.4306 -0.0065 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292660240.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:49 Heat of formation + Delta-G solvation = 17.860707 kcal Electronic energy + Delta-G solvation = -12604.449312 eV Core-core repulsion = 10130.241480 eV Total energy + Delta-G solvation = -2474.207831 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 246.024 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.14844 -37.18486 -32.85541 -32.00765 -31.16390 -27.79854 -27.12061 -22.94659 -21.94234 -21.67841 -19.46113 -17.74331 -16.93616 -16.21974 -16.00010 -15.56670 -15.10029 -14.60984 -13.85960 -13.57298 -13.45832 -13.01209 -12.52292 -11.65552 -11.49347 -11.03328 -10.98931 -10.87536 -10.75754 -10.72055 -10.44571 -10.03447 -9.91809 -9.26480 -8.98786 -8.57067 -8.06902 -6.15689 -4.15806 -0.02694 0.24748 0.83907 1.18405 1.78553 2.26725 3.21657 3.28845 3.29379 4.08902 4.31197 4.52005 4.62142 4.98098 5.07056 5.15116 5.28007 5.53349 5.83044 5.95003 6.49114 6.90015 7.51393 7.86713 8.21604 8.56829 8.95217 9.42174 10.97093 Molecular weight = 246.02amu Principal moments of inertia in cm(-1) A = 0.065323 B = 0.003797 C = 0.003600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 428.535887 B = 7373.301115 C = 7776.087029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.073 3.927 3 Si 0.876 3.124 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.266 1.266 7 C -0.522 4.522 8 H 0.084 0.916 9 C 0.170 3.830 10 O -0.373 6.373 11 C 0.073 3.927 12 C -0.110 4.110 13 S 0.042 5.958 14 C 0.006 3.994 15 N -0.269 5.269 16 N -0.247 5.247 17 C -0.001 4.001 18 S 0.098 5.902 19 H 0.267 0.733 20 H 0.006 0.994 21 H 0.002 0.998 22 H 0.051 0.949 23 H 0.051 0.949 24 H 0.108 0.892 25 H 0.108 0.892 26 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.162 -11.728 0.003 25.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.129 4.129 3 Si 0.703 3.297 4 H -0.199 1.199 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.560 4.560 8 H 0.102 0.898 9 C 0.094 3.906 10 O -0.293 6.293 11 C -0.006 4.006 12 C -0.260 4.260 13 S 0.272 5.728 14 C -0.381 4.381 15 N -0.111 5.111 16 N -0.081 5.081 17 C -0.306 4.306 18 S 0.335 5.665 19 H 0.077 0.923 20 H 0.024 0.976 21 H 0.020 0.980 22 H 0.069 0.931 23 H 0.069 0.931 24 H 0.126 0.874 25 H 0.126 0.874 26 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 22.348 -10.974 -0.001 24.897 hybrid contribution -0.294 0.013 -0.013 0.294 sum 22.054 -10.961 -0.014 24.628 Atomic orbital electron populations 1.69869 1.06055 1.27188 1.49941 1.24768 0.94835 0.98773 0.94556 0.86845 0.80338 0.83713 0.78826 1.19854 1.20670 1.19075 1.20859 0.88036 0.95471 1.51661 0.89831 1.20677 0.96353 0.78841 0.94686 1.87945 1.15952 1.30227 1.95140 1.21887 0.86277 0.91856 1.00587 1.23656 0.91378 1.02048 1.08922 1.85629 1.10059 0.88207 1.88874 1.31623 0.94109 1.06899 1.05455 1.71806 1.26896 0.94656 1.17693 1.70761 1.15481 1.09167 1.12651 1.31206 0.91084 1.03471 1.04877 1.85769 1.10282 1.00503 1.69983 0.92261 0.97587 0.98045 0.93120 0.93115 0.87353 0.87352 0.76432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.40 13.96 55.43 0.77 -26.62 15 2 C 0.07 2.13 5.47 -17.82 -0.10 2.03 15 3 Si 0.88 21.09 27.47 -169.99 -4.67 16.42 15 4 H -0.27 -6.40 7.11 56.52 0.40 -6.00 15 5 H -0.28 -6.64 7.11 56.52 0.40 -6.24 15 6 H -0.27 -6.09 6.54 56.52 0.37 -5.72 15 7 C -0.52 -15.45 9.99 -34.44 -0.34 -15.79 15 8 H 0.08 2.71 8.06 -52.49 -0.42 2.29 15 9 C 0.17 4.24 4.76 36.00 0.17 4.41 15 10 O -0.37 -8.52 10.33 -35.23 -0.36 -8.89 15 11 C 0.07 1.23 5.94 37.16 0.22 1.45 15 12 C -0.11 -1.60 5.58 37.16 0.21 -1.39 15 13 S 0.04 0.49 22.31 -107.50 -2.40 -1.91 15 14 C 0.01 0.08 7.85 52.12 0.41 0.49 15 15 N -0.27 -3.88 10.96 31.32 0.34 -3.54 15 16 N -0.25 -3.21 11.55 30.50 0.35 -2.85 15 17 C 0.00 -0.01 12.68 51.71 0.66 0.65 15 18 S 0.10 0.83 23.54 -107.50 -2.53 -1.70 15 19 H 0.27 7.58 8.31 -40.82 -0.34 7.24 15 20 H 0.01 0.16 7.20 -51.93 -0.37 -0.22 15 21 H 0.00 0.04 7.57 -51.93 -0.39 -0.35 15 22 H 0.05 0.78 8.14 -51.93 -0.42 0.36 15 23 H 0.05 0.78 8.14 -51.93 -0.42 0.36 15 24 H 0.11 1.63 8.14 -51.91 -0.42 1.21 15 25 H 0.11 1.63 8.14 -51.92 -0.42 1.21 15 26 H 0.22 0.83 8.06 -52.49 -0.42 0.40 15 LS Contribution 264.89 15.07 3.99 3.99 Total: -1.00 -32.96 264.89 -5.75 -38.70 By element: Atomic # 1 Polarization: -2.98 SS G_CDS: -2.47 Total: -5.45 kcal Atomic # 6 Polarization: -9.38 SS G_CDS: 1.22 Total: -8.16 kcal Atomic # 7 Polarization: -34.48 SS G_CDS: 1.47 Total: -33.01 kcal Atomic # 8 Polarization: -8.52 SS G_CDS: -0.36 Total: -8.89 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -4.67 Total: 16.42 kcal Atomic # 16 Polarization: 1.32 SS G_CDS: -4.93 Total: -3.61 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -32.96 -5.75 -38.70 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292660240.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.564 kcal (2) G-P(sol) polarization free energy of solvation -32.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds