Wall clock time and date at job start Mon Mar 30 2020 03:32:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86797 * 120.00072 * 2 1 4 4 H 1.48504 * 109.47074 * 269.99994 * 3 2 1 5 5 H 1.48498 * 109.47070 * 29.99927 * 3 2 1 6 6 H 1.48499 * 109.47373 * 150.00156 * 3 2 1 7 7 C 1.37884 * 119.99992 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00176 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99762 * 179.97438 * 7 2 1 10 10 O 1.42907 * 109.46942 * 180.02562 * 9 7 2 11 11 C 1.42903 * 113.99838 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.46726 * 179.97438 * 11 10 9 13 13 S 1.81002 * 109.47004 * 180.02562 * 12 11 10 14 14 C 1.76193 * 100.00049 * 180.02562 * 13 12 11 15 15 N 1.30308 * 126.17159 * 0.02562 * 14 13 12 16 16 N 1.26104 * 117.60720 * 179.97438 * 15 14 13 17 17 C 1.29328 * 117.97298 * 0.02562 * 16 15 14 18 18 S 1.76479 * 107.87951 * 359.75612 * 17 16 15 19 19 H 0.97000 * 120.00168 * 0.02562 * 1 2 3 20 20 H 1.09004 * 109.47569 * 60.00186 * 9 7 2 21 21 H 1.08996 * 109.47305 * 299.99830 * 9 7 2 22 22 H 1.09001 * 109.46938 * 60.00058 * 11 10 9 23 23 H 1.08992 * 109.47388 * 300.00049 * 11 10 9 24 24 H 1.09002 * 109.47398 * 300.00244 * 12 11 10 25 25 H 1.09001 * 109.47194 * 60.00425 * 12 11 10 26 26 H 1.07998 * 126.05836 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 8 3.9879 -2.5414 -0.0022 11 6 5.4124 -2.6542 -0.0022 12 6 5.8069 -4.1325 -0.0028 13 16 7.6113 -4.2754 -0.0021 14 6 7.7792 -6.0293 -0.0037 15 7 6.8054 -6.8952 -0.0054 16 7 7.1113 -8.1186 -0.0068 17 6 8.3665 -8.4301 -0.0059 18 16 9.2969 -6.9305 -0.0100 19 1 -0.4850 0.8400 -0.0004 20 1 3.8752 -0.6804 0.8889 21 1 3.8745 -0.6801 -0.8911 22 1 5.8151 -2.1713 0.8882 23 1 5.8152 -2.1699 -0.8917 24 1 5.4041 -4.6164 0.8870 25 1 5.4042 -4.6156 -0.8930 26 1 8.7732 -9.4306 -0.0065 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292660240.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:49 Heat of formation + Delta-G solvation = -6.659091 kcal Electronic energy + Delta-G solvation = -12605.512570 eV Core-core repulsion = 10130.241480 eV Total energy + Delta-G solvation = -2475.271090 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 246.024 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.00867 -38.86504 -34.97999 -33.03041 -32.47988 -29.81072 -27.92669 -24.33647 -23.91128 -22.53800 -20.27477 -19.10816 -18.55216 -17.75061 -17.22075 -16.68271 -16.51317 -16.10578 -15.13784 -14.97570 -14.61564 -14.44119 -14.24477 -13.19714 -13.06565 -12.60633 -12.50872 -12.17454 -11.86143 -11.82096 -11.58019 -11.43127 -11.27446 -10.94974 -10.75782 -10.47267 -8.95893 -8.38366 -6.47653 -0.78791 -0.56815 0.04834 0.38833 0.72874 1.34263 1.37915 1.42738 1.48637 2.29269 2.94052 3.06048 3.42793 3.76196 3.81991 3.89532 4.27737 4.45831 4.50987 4.57085 4.76585 4.96502 5.39564 5.87323 6.55595 6.65170 7.16356 7.39898 8.78726 Molecular weight = 246.02amu Principal moments of inertia in cm(-1) A = 0.065323 B = 0.003797 C = 0.003600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 428.535887 B = 7373.301115 C = 7776.087029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.011 3.989 3 Si 0.959 3.041 4 H -0.258 1.258 5 H -0.274 1.274 6 H -0.241 1.241 7 C -0.551 4.551 8 H 0.028 0.972 9 C 0.179 3.821 10 O -0.405 6.405 11 C 0.067 3.933 12 C -0.111 4.111 13 S 0.080 5.920 14 C -0.029 4.029 15 N -0.306 5.306 16 N -0.295 5.295 17 C 0.019 3.981 18 S 0.164 5.836 19 H 0.274 0.726 20 H 0.020 0.980 21 H 0.019 0.981 22 H 0.069 0.931 23 H 0.070 0.930 24 H 0.094 0.906 25 H 0.094 0.906 26 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.772 -11.066 -0.010 28.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.187 4.187 3 Si 0.779 3.221 4 H -0.183 1.183 5 H -0.199 1.199 6 H -0.164 1.164 7 C -0.589 4.589 8 H 0.046 0.954 9 C 0.103 3.897 10 O -0.325 6.325 11 C -0.011 4.011 12 C -0.261 4.261 13 S 0.310 5.690 14 C -0.417 4.417 15 N -0.148 5.148 16 N -0.128 5.128 17 C -0.286 4.286 18 S 0.401 5.599 19 H 0.083 0.917 20 H 0.038 0.962 21 H 0.037 0.963 22 H 0.087 0.913 23 H 0.088 0.912 24 H 0.113 0.887 25 H 0.113 0.887 26 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges 25.980 -10.351 -0.014 27.966 hybrid contribution -1.311 -0.434 -0.011 1.381 sum 24.670 -10.786 -0.024 26.924 Atomic orbital electron populations 1.70037 1.08377 1.28897 1.50763 1.25908 0.95872 1.03634 0.93312 0.85562 0.79529 0.77073 0.79903 1.18256 1.19885 1.16403 1.21161 0.91007 0.93879 1.52841 0.95399 1.20407 0.93246 0.80249 0.95782 1.87883 1.20055 1.29140 1.95413 1.22176 0.82987 0.93631 1.02297 1.23434 0.94593 1.00385 1.07673 1.85282 1.05980 0.88316 1.89408 1.31781 0.96139 1.07127 1.06625 1.71775 1.28803 0.95605 1.18627 1.70719 1.17780 1.08868 1.15469 1.32021 0.90030 1.05570 1.00945 1.85531 1.07165 0.98866 1.68349 0.91732 0.96232 0.96330 0.91299 0.91213 0.88710 0.88690 0.71963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.49 13.96 21.45 0.30 -59.19 15 2 C 0.01 0.64 5.47 84.66 0.46 1.10 15 3 Si 0.96 42.70 27.47 68.60 1.88 44.58 15 4 H -0.26 -10.85 7.11 99.48 0.71 -10.14 15 5 H -0.27 -11.79 7.11 99.48 0.71 -11.08 15 6 H -0.24 -9.70 6.54 99.48 0.65 -9.05 15 7 C -0.55 -33.74 9.99 25.60 0.26 -33.49 15 8 H 0.03 1.94 8.06 -2.91 -0.02 1.91 15 9 C 0.18 8.85 4.76 71.23 0.34 9.19 15 10 O -0.40 -18.76 10.33 -148.98 -1.54 -20.30 15 11 C 0.07 2.20 5.94 71.98 0.43 2.63 15 12 C -0.11 -3.24 5.58 71.98 0.40 -2.83 15 13 S 0.08 1.77 22.31 -56.49 -1.26 0.51 15 14 C -0.03 -0.68 7.85 130.47 1.02 0.35 15 15 N -0.31 -8.83 10.96 -54.83 -0.60 -9.43 15 16 N -0.29 -7.41 11.55 -57.40 -0.66 -8.08 15 17 C 0.02 0.27 12.68 130.61 1.66 1.92 15 18 S 0.16 2.31 23.54 -56.49 -1.33 0.98 15 19 H 0.27 15.81 8.31 -92.71 -0.77 15.04 15 20 H 0.02 0.92 7.20 -2.39 -0.02 0.91 15 21 H 0.02 0.87 7.57 -2.39 -0.02 0.85 15 22 H 0.07 2.00 8.14 -2.39 -0.02 1.98 15 23 H 0.07 2.01 8.14 -2.39 -0.02 1.99 15 24 H 0.09 2.98 8.14 -2.39 -0.02 2.96 15 25 H 0.09 2.98 8.14 -2.39 -0.02 2.96 15 26 H 0.26 0.86 8.06 -2.91 -0.02 0.84 15 Total: -1.00 -75.39 264.89 2.49 -72.90 By element: Atomic # 1 Polarization: -1.97 SS G_CDS: 1.13 Total: -0.83 kcal Atomic # 6 Polarization: -25.70 SS G_CDS: 4.57 Total: -21.13 kcal Atomic # 7 Polarization: -75.74 SS G_CDS: -0.96 Total: -76.70 kcal Atomic # 8 Polarization: -18.76 SS G_CDS: -1.54 Total: -20.30 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 1.88 Total: 44.58 kcal Atomic # 16 Polarization: 4.08 SS G_CDS: -2.59 Total: 1.49 kcal Total: -75.39 2.49 -72.90 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292660240.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.236 kcal (2) G-P(sol) polarization free energy of solvation -75.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds