Wall clock time and date at job start Mon Mar 30 2020 03:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47144 * 36.35667 * 3 2 1 5 5 C 1.36908 * 119.99984 * 262.78066 * 4 3 2 6 6 H 1.07997 * 120.00301 * 204.42480 * 5 4 3 7 7 C 1.39025 * 119.99669 * 24.42842 * 5 4 3 8 8 N 1.31381 * 120.00390 * 23.80497 * 7 5 4 9 9 Si 1.86801 * 119.99767 * 203.81102 * 7 5 4 10 10 H 1.48497 * 109.47077 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47348 * 119.99765 * 9 7 5 12 12 H 1.48496 * 109.46999 * 240.00047 * 9 7 5 13 13 C 1.34775 * 120.00132 * 82.78725 * 4 3 2 14 14 O 1.21614 * 120.00344 * 174.07469 * 13 4 3 15 15 C 1.47448 * 119.99841 * 354.34527 * 13 4 3 16 16 C 1.39606 * 120.62409 * 54.59014 * 15 13 4 17 17 N 1.31624 * 120.60330 * 179.97438 * 16 15 13 18 18 C 1.32126 * 122.06530 * 0.02621 * 17 16 15 19 19 C 1.37917 * 121.19851 * 0.02562 * 18 17 16 20 20 C 1.39205 * 119.24637 * 359.68387 * 19 18 17 21 21 O 1.35509 * 120.93847 * 180.29286 * 20 19 18 22 22 H 4.40638 * 5.51418 * 180.02562 * 4 1 2 23 23 H 1.08999 * 109.47000 * 276.35427 * 3 2 1 24 24 H 1.09004 * 109.46928 * 156.35546 * 3 2 1 25 25 H 0.97001 * 120.00050 * 180.02562 * 8 7 5 26 26 H 1.08004 * 119.69341 * 359.97438 * 16 15 13 27 27 H 1.08004 * 119.40397 * 179.97438 * 18 17 16 28 28 H 1.08007 * 120.38095 * 179.97438 * 19 18 17 29 29 H 0.96705 * 113.99572 * 270.27336 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1348 -1.1115 -0.8188 5 6 3.5040 -2.2884 -0.2247 6 1 4.2068 -2.9444 -0.7165 7 6 2.9741 -2.6389 1.0119 8 7 1.8231 -2.1377 1.3993 9 14 3.8987 -3.8224 2.1227 10 1 5.1597 -4.2410 1.4595 11 1 4.2147 -3.1501 3.4085 12 1 3.0565 -5.0175 2.3828 13 6 3.2212 -0.9760 -2.1569 14 8 3.7267 -1.8569 -2.8260 15 6 2.7083 0.2428 -2.8092 16 6 3.1471 1.5046 -2.4041 17 7 2.6893 2.5924 -2.9869 18 6 1.8056 2.5435 -3.9680 19 6 1.3174 1.3394 -4.4304 20 6 1.7708 0.1556 -3.8552 21 8 1.3186 -1.0466 -4.2868 22 1 -1.0498 -0.0002 -0.0004 23 1 3.0093 -0.1129 1.0213 24 1 3.0089 0.9423 -0.4122 25 1 1.4535 -2.3820 2.2623 26 1 3.8689 1.5890 -1.6051 27 1 1.4587 3.4632 -4.4155 28 1 0.5949 1.3149 -5.2329 29 1 0.5283 -1.3584 -3.8249 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300824280.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:59:04 Heat of formation + Delta-G solvation = 15.559175 kcal Electronic energy + Delta-G solvation = -17609.618197 eV Core-core repulsion = 14692.946835 eV Total energy + Delta-G solvation = -2916.671361 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.75412 -39.89902 -38.43163 -37.06788 -34.24034 -33.12040 -32.31556 -32.14972 -28.32216 -27.12454 -24.92388 -24.37217 -21.48417 -19.86800 -19.64224 -18.58529 -18.35822 -17.58807 -17.15899 -16.80340 -16.16340 -15.56775 -15.34380 -15.26196 -14.82358 -14.46522 -14.11960 -14.10602 -13.61462 -13.54610 -12.82659 -12.56511 -12.15815 -11.90692 -11.26422 -11.19072 -10.95301 -10.66849 -10.43970 -10.36590 -10.09741 -9.82639 -8.38896 -6.01035 -0.14799 0.06891 1.33767 1.42915 1.55973 1.80486 2.08093 2.29661 2.34591 2.65937 2.96589 3.01035 3.06189 3.43053 3.74550 3.87633 3.94957 4.10695 4.43390 4.55432 4.67476 4.73278 4.78028 5.08943 5.34961 5.42946 5.53770 6.01394 6.36865 6.56924 6.86580 7.05803 7.10885 7.29187 7.88412 8.59464 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.030940 B = 0.008102 C = 0.007562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.767646 B = 3455.207875 C = 3701.985474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.157 4.157 3 C 0.224 3.776 4 N -0.433 5.433 5 C -0.358 4.358 6 H 0.074 0.926 7 C 0.011 3.989 8 N -0.859 5.859 9 Si 0.983 3.017 10 H -0.273 1.273 11 H -0.263 1.263 12 H -0.279 1.279 13 C 0.486 3.514 14 O -0.617 6.617 15 C -0.198 4.198 16 C 0.128 3.872 17 N -0.497 5.497 18 C 0.121 3.879 19 C -0.188 4.188 20 C 0.169 3.831 21 O -0.498 6.498 22 H 0.234 0.766 23 H 0.089 0.911 24 H 0.100 0.900 25 H 0.275 0.725 26 H 0.169 0.831 27 H 0.207 0.793 28 H 0.178 0.822 29 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.994 9.745 -3.482 11.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C -0.159 4.159 3 C 0.102 3.898 4 N -0.150 5.150 5 C -0.485 4.485 6 H 0.092 0.908 7 C -0.195 4.195 8 N -0.494 5.494 9 Si 0.806 3.194 10 H -0.198 1.198 11 H -0.187 1.187 12 H -0.205 1.205 13 C 0.276 3.724 14 O -0.504 6.504 15 C -0.204 4.204 16 C -0.030 4.030 17 N -0.207 5.207 18 C -0.034 4.034 19 C -0.208 4.208 20 C 0.115 3.885 21 O -0.310 6.310 22 H 0.250 0.750 23 H 0.108 0.892 24 H 0.118 0.882 25 H 0.085 0.915 26 H 0.186 0.814 27 H 0.224 0.776 28 H 0.196 0.804 29 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -4.094 10.115 -3.699 11.522 hybrid contribution -0.491 -2.040 0.735 2.223 sum -4.584 8.075 -2.964 9.747 Atomic orbital electron populations 1.25081 0.96237 1.02234 1.01929 1.23277 0.94828 0.98551 0.99208 1.18570 0.85239 0.89163 0.96869 1.43750 1.54736 1.12729 1.03791 1.19535 1.25651 0.99985 1.03369 0.90770 1.26045 0.95065 0.99419 0.98926 1.70180 1.14164 1.43809 1.21216 0.85055 0.78430 0.77790 0.78098 1.19786 1.18716 1.20492 1.18271 0.84548 0.87316 0.82269 1.90599 1.50046 1.45487 1.64224 1.21575 1.03292 0.95756 0.99817 1.22983 0.96999 0.85724 0.97251 1.67712 1.12075 1.30817 1.10109 1.23448 0.90394 0.98722 0.90875 1.22688 1.03671 0.90952 1.03499 1.19103 0.92508 0.86627 0.90293 1.84654 1.50099 1.33801 1.62463 0.74975 0.89248 0.88220 0.91530 0.81401 0.77639 0.80420 0.73206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -9.06 19.25 74.32 1.43 -7.63 15 2 C -0.16 -6.77 10.95 31.13 0.34 -6.43 15 3 C 0.22 9.78 4.85 84.58 0.41 10.19 15 4 N -0.43 -22.29 2.58 -649.12 -1.68 -23.97 15 5 C -0.36 -20.08 9.19 84.09 0.77 -19.31 15 6 H 0.07 4.52 7.48 -2.91 -0.02 4.50 15 7 C 0.01 0.58 4.74 84.95 0.40 0.98 15 8 N -0.86 -43.85 9.98 21.68 0.22 -43.63 15 9 Si 0.98 41.08 29.61 68.60 2.03 43.11 15 10 H -0.27 -11.67 7.11 99.48 0.71 -10.97 15 11 H -0.26 -10.24 7.11 99.48 0.71 -9.54 15 12 H -0.28 -11.52 7.11 99.48 0.71 -10.81 15 13 C 0.49 25.12 6.77 86.67 0.59 25.71 15 14 O -0.62 -37.35 16.56 -3.78 -0.06 -37.42 15 15 C -0.20 -8.13 4.81 -19.91 -0.10 -8.23 15 16 C 0.13 4.44 9.07 85.05 0.77 5.21 15 17 N -0.50 -14.76 10.34 -194.93 -2.02 -16.77 15 18 C 0.12 2.82 11.16 84.57 0.94 3.76 15 19 C -0.19 -4.74 10.06 22.43 0.23 -4.51 15 20 C 0.17 6.02 6.78 23.11 0.16 6.17 15 21 O -0.50 -18.35 12.88 -87.82 -1.13 -19.48 15 22 H 0.23 6.81 7.80 -4.43 -0.03 6.78 15 23 H 0.09 4.06 6.92 -2.39 -0.02 4.05 15 24 H 0.10 3.70 4.14 -2.39 -0.01 3.69 15 25 H 0.27 13.16 8.31 -92.71 -0.77 12.39 15 26 H 0.17 5.42 6.48 -2.91 -0.02 5.40 15 27 H 0.21 2.73 8.06 -2.91 -0.02 2.70 15 28 H 0.18 3.07 8.06 -2.91 -0.02 3.05 15 29 H 0.41 11.94 9.06 -74.05 -0.67 11.26 15 Total: -1.00 -73.57 267.20 3.84 -69.73 By element: Atomic # 1 Polarization: 21.98 SS G_CDS: 0.53 Total: 22.51 kcal Atomic # 6 Polarization: -0.03 SS G_CDS: 5.94 Total: 5.92 kcal Atomic # 7 Polarization: -80.90 SS G_CDS: -3.48 Total: -84.37 kcal Atomic # 8 Polarization: -55.70 SS G_CDS: -1.19 Total: -56.89 kcal Atomic # 14 Polarization: 41.08 SS G_CDS: 2.03 Total: 43.11 kcal Total: -73.57 3.84 -69.73 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300824280.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.292 kcal (2) G-P(sol) polarization free energy of solvation -73.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds