Wall clock time and date at job start Mon Mar 30 2020 03:29:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00053 * 2 1 4 4 H 1.48499 * 109.47105 * 269.99583 * 3 2 1 5 5 H 1.48499 * 109.47427 * 29.99831 * 3 2 1 6 6 H 1.48508 * 109.47164 * 149.99864 * 3 2 1 7 7 C 1.37886 * 119.99860 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99853 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99789 * 0.02562 * 7 2 1 10 10 N 1.46498 * 109.46769 * 179.97438 * 9 7 2 11 11 C 1.34777 * 119.99828 * 179.72341 * 10 9 7 12 12 O 1.21623 * 119.99969 * 0.28063 * 11 10 9 13 13 C 1.47224 * 119.99940 * 180.27642 * 11 10 9 14 14 N 1.30602 * 125.53370 * 359.69956 * 13 11 10 15 15 C 1.30738 * 115.89674 * 179.77825 * 14 13 11 16 16 Cl 1.73601 * 122.12058 * 180.23979 * 15 14 13 17 17 C 1.34339 * 115.75802 * 0.51421 * 15 14 13 18 18 S 1.71070 * 109.09222 * 359.72722 * 17 15 14 19 19 H 0.96999 * 120.00067 * 0.02562 * 1 2 3 20 20 H 1.09004 * 109.47210 * 60.00161 * 9 7 2 21 21 H 1.08994 * 109.47121 * 300.00131 * 9 7 2 22 22 H 0.97001 * 120.00384 * 0.02562 * 10 9 7 23 23 H 1.08001 * 125.45309 * 179.71927 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 1.7537 -4.8834 0.0062 12 8 0.5579 -5.1056 0.0061 13 6 2.7104 -6.0024 0.0123 14 7 4.0114 -5.8887 0.0074 15 6 4.6827 -7.0106 0.0190 16 17 6.4183 -7.0478 0.0208 17 6 3.9441 -8.1327 0.0236 18 16 2.2861 -7.7115 0.0200 19 1 -0.4850 0.8400 -0.0004 20 1 0.6246 -2.5571 -0.8897 21 1 0.6240 -2.5567 0.8902 22 1 3.1566 -3.4355 0.0009 23 1 4.3347 -9.1397 0.0287 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306227014.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:49 Heat of formation + Delta-G solvation = -1.685067 kcal Electronic energy + Delta-G solvation = -12778.473522 eV Core-core repulsion = 10165.541321 eV Total energy + Delta-G solvation = -2612.932201 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 245.997 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.10067 -38.58527 -36.65796 -34.37034 -32.44237 -30.67257 -27.70510 -26.07033 -22.97203 -21.49768 -19.60808 -18.79537 -17.37251 -16.15335 -15.50081 -15.46281 -15.24227 -14.34907 -14.12081 -13.80726 -12.97927 -12.24385 -12.09133 -12.02616 -11.67148 -11.21578 -11.02175 -10.90760 -10.41890 -10.27418 -9.93079 -9.60248 -9.43141 -8.92012 -8.78698 -8.03965 -6.19947 -4.26914 0.08305 0.89057 1.15594 2.09568 2.13883 3.24914 3.31033 3.34032 3.49772 3.72523 4.30344 4.50810 4.81967 5.00511 5.16775 5.57562 7.06075 7.13992 7.26160 7.40314 7.60461 7.89437 8.42011 8.61641 8.87333 9.39177 10.90176 Molecular weight = 246.00amu Principal moments of inertia in cm(-1) A = 0.031007 B = 0.005422 C = 0.004627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.818855 B = 5162.879012 C = 6050.543847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.065 3.935 3 Si 0.906 3.094 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.545 4.545 8 H 0.066 0.934 9 C 0.247 3.753 10 N -0.674 5.674 11 C 0.575 3.425 12 O -0.538 6.538 13 C 0.021 3.979 14 N -0.427 5.427 15 C 0.112 3.888 16 Cl -0.012 7.012 17 C -0.286 4.286 18 S 0.280 5.720 19 H 0.267 0.733 20 H 0.035 0.965 21 H 0.035 0.965 22 H 0.404 0.596 23 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.678 -16.016 0.064 18.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.139 4.139 3 Si 0.733 3.267 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.583 4.583 8 H 0.084 0.916 9 C 0.127 3.873 10 N -0.322 5.322 11 C 0.354 3.646 12 O -0.417 6.417 13 C -0.256 4.256 14 N -0.146 5.146 15 C -0.053 4.053 16 Cl 0.016 6.984 17 C -0.428 4.428 18 S 0.535 5.465 19 H 0.076 0.924 20 H 0.053 0.947 21 H 0.053 0.947 22 H 0.238 0.762 23 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 7.056 -16.011 0.058 17.497 hybrid contribution 2.237 0.904 -0.005 2.413 sum 9.293 -15.107 0.053 17.736 Atomic orbital electron populations 1.69966 1.06100 1.27459 1.48733 1.24938 0.94943 0.99488 0.94532 0.86373 0.79656 0.82381 0.78292 1.20397 1.20966 1.19647 1.21204 0.93481 0.90125 1.53514 0.91601 1.19332 0.88151 0.81467 0.98364 1.46401 1.12497 1.04828 1.68442 1.16750 0.86032 0.82203 0.79603 1.90843 1.14310 1.84166 1.52357 1.28159 0.92248 0.98503 1.06661 1.66297 1.05022 1.29376 1.13893 1.20403 0.89179 0.88065 1.07629 1.98395 1.04624 1.98346 1.97081 1.26549 0.99345 1.04414 1.12538 1.84114 1.00728 1.00511 1.61195 0.92355 0.94747 0.94735 0.76186 0.79158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.64 13.29 55.43 0.74 -24.91 14 2 C 0.06 1.78 5.46 -17.82 -0.10 1.69 14 3 Si 0.91 20.81 29.54 -169.99 -5.02 15.79 14 4 H -0.28 -6.31 7.11 56.52 0.40 -5.91 14 5 H -0.28 -6.47 7.11 56.52 0.40 -6.07 14 6 H -0.27 -6.11 7.11 56.52 0.40 -5.71 14 7 C -0.54 -14.73 9.28 -34.44 -0.32 -15.05 14 8 H 0.07 1.69 7.60 -52.49 -0.40 1.29 14 9 C 0.25 6.44 5.43 -5.19 -0.03 6.41 14 10 N -0.67 -14.68 5.54 -62.63 -0.35 -15.02 14 11 C 0.57 11.73 7.81 -12.61 -0.10 11.63 14 12 O -0.54 -12.35 16.94 5.26 0.09 -12.26 14 13 C 0.02 0.35 7.46 -14.43 -0.11 0.24 14 14 N -0.43 -6.83 10.25 -8.61 -0.09 -6.92 14 15 C 0.11 1.49 7.22 -19.39 -0.14 1.35 14 16 Cl -0.01 -0.15 29.20 -51.86 -1.51 -1.66 14 17 C -0.29 -3.01 10.93 29.36 0.32 -2.69 14 18 S 0.28 3.33 23.03 -107.50 -2.48 0.85 14 19 H 0.27 7.24 8.31 -40.82 -0.34 6.91 14 20 H 0.03 0.97 8.14 -51.93 -0.42 0.55 14 21 H 0.03 0.98 8.14 -51.93 -0.42 0.55 14 22 H 0.40 8.13 7.98 -40.82 -0.33 7.81 14 23 H 0.19 1.33 8.06 -52.49 -0.42 0.91 14 LS Contribution 250.90 15.07 3.78 3.78 Total: -1.00 -30.00 250.90 -6.44 -36.44 By element: Atomic # 1 Polarization: 1.45 SS G_CDS: -1.13 Total: 0.33 kcal Atomic # 6 Polarization: 4.05 SS G_CDS: -0.47 Total: 3.58 kcal Atomic # 7 Polarization: -47.15 SS G_CDS: 0.30 Total: -46.85 kcal Atomic # 8 Polarization: -12.35 SS G_CDS: 0.09 Total: -12.26 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Atomic # 16 Polarization: 3.33 SS G_CDS: -2.48 Total: 0.85 kcal Atomic # 17 Polarization: -0.15 SS G_CDS: -1.51 Total: -1.66 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -30.00 -6.44 -36.44 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306227014.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.753 kcal (2) G-P(sol) polarization free energy of solvation -30.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds