Wall clock time and date at job start Mon Mar 30 2020 03:29:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00053 * 2 1 4 4 H 1.48499 * 109.47105 * 269.99583 * 3 2 1 5 5 H 1.48499 * 109.47427 * 29.99831 * 3 2 1 6 6 H 1.48508 * 109.47164 * 149.99864 * 3 2 1 7 7 C 1.37886 * 119.99860 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99853 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99789 * 0.02562 * 7 2 1 10 10 N 1.46498 * 109.46769 * 179.97438 * 9 7 2 11 11 C 1.34777 * 119.99828 * 179.72341 * 10 9 7 12 12 O 1.21623 * 119.99969 * 0.28063 * 11 10 9 13 13 C 1.47224 * 119.99940 * 180.27642 * 11 10 9 14 14 N 1.30602 * 125.53370 * 359.69956 * 13 11 10 15 15 C 1.30738 * 115.89674 * 179.77825 * 14 13 11 16 16 Cl 1.73601 * 122.12058 * 180.23979 * 15 14 13 17 17 C 1.34339 * 115.75802 * 0.51421 * 15 14 13 18 18 S 1.71070 * 109.09222 * 359.72722 * 17 15 14 19 19 H 0.96999 * 120.00067 * 0.02562 * 1 2 3 20 20 H 1.09004 * 109.47210 * 60.00161 * 9 7 2 21 21 H 1.08994 * 109.47121 * 300.00131 * 9 7 2 22 22 H 0.97001 * 120.00384 * 0.02562 * 10 9 7 23 23 H 1.08001 * 125.45309 * 179.71927 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 1.7537 -4.8834 0.0062 12 8 0.5579 -5.1056 0.0061 13 6 2.7104 -6.0024 0.0123 14 7 4.0114 -5.8887 0.0074 15 6 4.6827 -7.0106 0.0190 16 17 6.4183 -7.0478 0.0208 17 6 3.9441 -8.1327 0.0236 18 16 2.2861 -7.7115 0.0200 19 1 -0.4850 0.8400 -0.0004 20 1 0.6246 -2.5571 -0.8897 21 1 0.6240 -2.5567 0.8902 22 1 3.1566 -3.4355 0.0009 23 1 4.3347 -9.1397 0.0287 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306227014.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:49 Heat of formation + Delta-G solvation = -24.105150 kcal Electronic energy + Delta-G solvation = -12779.445729 eV Core-core repulsion = 10165.541321 eV Total energy + Delta-G solvation = -2613.904408 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 245.997 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.31964 -40.11968 -37.60545 -36.27748 -34.42923 -31.84400 -29.49567 -27.48913 -24.81030 -22.93388 -21.09690 -19.98103 -18.87420 -17.84924 -17.07311 -16.80207 -16.74538 -16.10690 -15.61502 -15.02322 -14.51706 -14.05158 -14.01340 -13.18983 -12.96120 -12.77974 -12.70035 -12.26800 -12.13936 -11.66014 -11.52474 -11.04098 -10.94216 -10.82869 -10.09358 -9.80901 -8.30451 -6.46503 -1.01196 -0.12187 0.11753 0.99303 1.11884 1.43911 1.45748 1.57243 1.99648 2.22622 2.43370 3.04608 3.17603 3.78442 4.04570 4.41793 5.03114 5.19754 5.33971 5.56053 5.79894 6.06070 6.58849 6.67492 7.08058 7.27535 8.81406 Molecular weight = 246.00amu Principal moments of inertia in cm(-1) A = 0.031007 B = 0.005422 C = 0.004627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.818855 B = 5162.879012 C = 6050.543847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.009 3.991 3 Si 0.983 3.017 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.260 1.260 7 C -0.560 4.560 8 H 0.078 0.922 9 C 0.265 3.735 10 N -0.680 5.680 11 C 0.580 3.420 12 O -0.573 6.573 13 C -0.039 4.039 14 N -0.439 5.439 15 C 0.082 3.918 16 Cl -0.002 7.002 17 C -0.247 4.247 18 S 0.357 5.643 19 H 0.271 0.729 20 H 0.002 0.998 21 H 0.002 0.998 22 H 0.411 0.589 23 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.585 -17.523 0.075 20.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.191 4.191 3 Si 0.806 3.194 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.184 1.184 7 C -0.598 4.598 8 H 0.096 0.904 9 C 0.143 3.857 10 N -0.328 5.328 11 C 0.363 3.637 12 O -0.454 6.454 13 C -0.312 4.312 14 N -0.159 5.159 15 C -0.082 4.082 16 Cl 0.026 6.974 17 C -0.389 4.389 18 S 0.610 5.390 19 H 0.079 0.921 20 H 0.020 0.980 21 H 0.020 0.980 22 H 0.247 0.753 23 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 8.987 -17.535 0.068 19.704 hybrid contribution 1.668 1.122 -0.009 2.010 sum 10.654 -16.413 0.059 19.568 Atomic orbital electron populations 1.70106 1.07995 1.28698 1.49585 1.25981 0.95819 1.03590 0.93707 0.85179 0.78429 0.77126 0.78644 1.19550 1.20559 1.18411 1.21555 0.94167 0.90619 1.53462 0.90399 1.18776 0.88362 0.83294 0.95317 1.46115 1.12035 1.04881 1.69810 1.17126 0.86401 0.82589 0.77622 1.90801 1.16132 1.84912 1.53530 1.27160 0.92021 0.99782 1.12248 1.66179 1.05128 1.31508 1.13068 1.20574 0.89952 0.88133 1.09574 1.98398 1.03545 1.98270 1.97179 1.27166 0.98570 1.05681 1.07525 1.83900 1.00759 0.95940 1.58367 0.92055 0.97999 0.97979 0.75289 0.74769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.13 13.29 21.45 0.28 -54.84 14 2 C 0.01 0.52 5.46 84.66 0.46 0.98 14 3 Si 0.98 42.75 29.54 68.60 2.03 44.77 14 4 H -0.27 -11.36 7.11 99.48 0.71 -10.65 14 5 H -0.28 -11.93 7.11 99.48 0.71 -11.22 14 6 H -0.26 -10.74 7.11 99.48 0.71 -10.04 14 7 C -0.56 -31.01 9.28 25.60 0.24 -30.77 14 8 H 0.08 4.02 7.60 -2.91 -0.02 4.00 14 9 C 0.26 14.57 5.43 85.63 0.46 15.04 14 10 N -0.68 -30.92 5.54 -470.31 -2.61 -33.53 14 11 C 0.58 24.47 7.81 86.60 0.68 25.15 14 12 O -0.57 -27.37 16.94 -4.10 -0.07 -27.44 14 13 C -0.04 -1.25 7.46 87.24 0.65 -0.60 14 14 N -0.44 -13.58 10.25 -181.16 -1.86 -15.44 14 15 C 0.08 1.97 7.22 83.96 0.61 2.58 14 16 Cl 0.00 -0.04 29.20 -2.72 -0.08 -0.12 14 17 C -0.25 -4.16 10.93 66.93 0.73 -3.43 14 18 S 0.36 7.48 23.03 -56.49 -1.30 6.17 14 19 H 0.27 15.00 8.31 -92.71 -0.77 14.23 14 20 H 0.00 0.12 8.14 -2.38 -0.02 0.11 14 21 H 0.00 0.14 8.14 -2.39 -0.02 0.12 14 22 H 0.41 17.12 7.98 -92.71 -0.74 16.38 14 23 H 0.24 1.80 8.06 -2.91 -0.02 1.78 14 Total: -1.00 -67.52 250.90 0.75 -66.77 By element: Atomic # 1 Polarization: 4.17 SS G_CDS: 0.53 Total: 4.70 kcal Atomic # 6 Polarization: 5.12 SS G_CDS: 3.83 Total: 8.95 kcal Atomic # 7 Polarization: -99.63 SS G_CDS: -4.18 Total: -103.81 kcal Atomic # 8 Polarization: -27.37 SS G_CDS: -0.07 Total: -27.44 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.77 kcal Atomic # 16 Polarization: 7.48 SS G_CDS: -1.30 Total: 6.17 kcal Atomic # 17 Polarization: -0.04 SS G_CDS: -0.08 Total: -0.12 kcal Total: -67.52 0.75 -66.77 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306227014.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.663 kcal (2) G-P(sol) polarization free energy of solvation -67.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds