Wall clock time and date at job start Mon Mar 30 2020 03:57:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86793 * 120.00144 * 2 1 4 4 H 1.48499 * 109.47311 * 269.99388 * 3 2 1 5 5 H 1.48501 * 109.47545 * 29.99527 * 3 2 1 6 6 H 1.48500 * 109.47455 * 149.99463 * 3 2 1 7 7 C 1.37877 * 119.99734 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99886 * 180.02562 * 7 2 1 9 9 S 1.76198 * 120.00269 * 0.02562 * 7 2 1 10 10 O 1.42101 * 106.40061 * 66.45553 * 9 7 2 11 11 O 1.42105 * 106.40398 * 293.54212 * 9 7 2 12 12 N 1.65597 * 107.22133 * 179.97438 * 9 7 2 13 13 C 1.49383 * 127.15471 * 269.99996 * 12 9 7 14 14 C 1.56296 * 106.41240 * 171.06188 * 13 12 9 15 15 C 1.52058 * 100.75828 * 336.36284 * 14 13 12 16 16 H 1.08996 * 111.81795 * 285.87543 * 15 14 13 17 17 C 1.51159 * 122.55652 * 149.84068 * 15 14 13 18 18 N 1.49426 * 105.21689 * 220.36951 * 17 15 14 19 19 C 1.50056 * 107.82027 * 7.18268 * 18 17 15 20 20 C 1.42332 * 127.15390 * 89.99944 * 12 9 7 21 21 H 1.09004 * 107.99714 * 105.39210 * 20 12 9 22 22 H 0.97002 * 119.99777 * 0.02562 * 1 2 3 23 23 H 1.08995 * 110.07193 * 290.30104 * 13 12 9 24 24 H 1.08998 * 110.06558 * 51.77550 * 13 12 9 25 25 H 1.08998 * 111.15873 * 94.24118 * 14 13 12 26 26 H 1.09001 * 111.15923 * 218.45013 * 14 13 12 27 27 H 1.08999 * 110.29308 * 101.43236 * 17 15 14 28 28 H 1.09005 * 110.28869 * 339.30238 * 17 15 14 29 29 H 1.00894 * 111.00069 * 245.40605 * 18 17 15 30 30 H 1.08994 * 110.83301 * 142.61521 * 19 18 17 31 31 H 1.09004 * 110.83319 * 266.19881 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4466 2.6527 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 16 1.1235 -2.7200 0.0005 10 8 0.4517 -2.7955 -1.2494 11 8 0.4508 -2.7950 1.2500 12 7 2.2481 -3.9355 0.0005 13 6 2.8609 -4.5977 -1.1901 14 6 4.0147 -5.5016 -0.6475 15 6 4.3206 -4.8102 0.6718 16 1 4.8581 -3.8738 0.5233 17 6 4.8400 -5.5559 1.8797 18 7 4.1191 -4.9631 3.0466 19 6 3.0767 -4.0244 2.5136 20 6 2.8320 -4.5664 1.1349 21 1 2.3855 -5.5555 1.2372 22 1 -0.4850 0.8401 -0.0004 23 1 2.1174 -5.2078 -1.7027 24 1 3.2618 -3.8466 -1.8707 25 1 3.6712 -6.5234 -0.4860 26 1 4.8777 -5.4799 -1.3131 27 1 5.9147 -5.4058 1.9833 28 1 4.6123 -6.6185 1.7947 29 1 4.7590 -4.4819 3.6605 30 1 2.1690 -4.0711 3.1153 31 1 3.4603 -3.0051 2.4671 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306812872.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:02 Heat of formation + Delta-G solvation = -62.386989 kcal Electronic energy + Delta-G solvation = -16978.309944 eV Core-core repulsion = 14193.702535 eV Total energy + Delta-G solvation = -2784.607409 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 246.082 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.97872 -35.34618 -34.98975 -33.97824 -33.11100 -30.98603 -27.93101 -27.00725 -26.15699 -22.05473 -21.24600 -20.22674 -18.55678 -17.38974 -16.37017 -16.16228 -15.28300 -14.74829 -14.37150 -14.05667 -13.93723 -13.62207 -12.85157 -12.74663 -12.35015 -12.05610 -11.74975 -11.61023 -11.29526 -11.24157 -10.88287 -10.69697 -10.62587 -10.44811 -10.31187 -10.21891 -9.83980 -9.27891 -8.93452 -8.40631 -8.15691 -6.72390 -5.35161 2.18553 3.03669 3.10399 3.16240 3.94109 4.09590 4.27345 4.60784 4.79960 4.97382 5.06228 5.29835 5.40860 5.56938 5.61537 5.73164 5.87546 5.91349 5.93240 6.08138 6.14024 6.19729 6.35811 6.39745 6.54270 6.73662 6.97255 7.29873 7.39529 7.53194 7.94450 8.85677 10.21187 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.028171 B = 0.009271 C = 0.008526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.708419 B = 3019.300190 C = 3283.348059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.133 3.867 3 Si 0.920 3.080 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.263 1.263 7 C -1.020 5.020 8 H 0.100 0.900 9 S 2.724 3.276 10 O -1.001 7.001 11 O -0.995 6.995 12 N -1.000 6.000 13 C 0.129 3.871 14 C -0.108 4.108 15 C -0.157 4.157 16 H 0.085 0.915 17 C 0.059 3.941 18 N -0.678 5.678 19 C 0.049 3.951 20 C 0.139 3.861 21 H 0.059 0.941 22 H 0.291 0.709 23 H 0.067 0.933 24 H 0.071 0.929 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.057 0.943 28 H 0.077 0.923 29 H 0.339 0.661 30 H 0.099 0.901 31 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.285 -7.499 1.197 12.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.085 4.085 3 Si 0.744 3.256 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.188 1.188 7 C -1.153 5.153 8 H 0.118 0.882 9 S 2.826 3.174 10 O -0.991 6.991 11 O -0.986 6.986 12 N -0.834 5.834 13 C 0.003 3.997 14 C -0.148 4.148 15 C -0.178 4.178 16 H 0.104 0.896 17 C -0.070 4.070 18 N -0.307 5.307 19 C -0.080 4.080 20 C 0.029 3.971 21 H 0.076 0.924 22 H 0.102 0.898 23 H 0.086 0.914 24 H 0.089 0.911 25 H 0.094 0.906 26 H 0.094 0.906 27 H 0.076 0.924 28 H 0.096 0.904 29 H 0.153 0.847 30 H 0.117 0.883 31 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 8.616 -8.067 1.316 11.876 hybrid contribution 1.554 2.100 -0.362 2.637 sum 10.170 -5.967 0.953 11.830 Atomic orbital electron populations 1.69893 1.06763 1.30785 1.40020 1.24750 0.94475 1.00763 0.88517 0.86167 0.80131 0.80085 0.79195 1.19161 1.19874 1.18750 1.30607 1.06000 1.11823 1.66886 0.88173 1.00288 0.71724 0.72558 0.72875 1.93356 1.72515 1.87471 1.45790 1.93368 1.72186 1.87389 1.45626 1.58381 1.60683 1.54237 1.10134 1.22432 0.94222 0.95371 0.87628 1.22169 0.97993 0.98672 0.95924 1.23170 0.98524 1.00667 0.95447 0.89620 1.22038 0.96537 0.99426 0.89001 1.63327 1.15775 1.35024 1.16573 1.22196 0.96718 0.94804 0.94245 1.20538 0.92046 0.96219 0.88292 0.92354 0.89819 0.91441 0.91089 0.90642 0.90595 0.92418 0.90442 0.84675 0.88302 0.92230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.95 13.19 55.43 0.73 -24.22 16 2 C 0.13 3.72 5.46 -17.82 -0.10 3.63 16 3 Si 0.92 20.60 29.54 -169.99 -5.02 15.58 16 4 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 5 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 6 H -0.26 -5.68 7.11 56.52 0.40 -5.28 16 7 C -1.02 -28.26 9.75 30.60 0.30 -27.96 16 8 H 0.10 2.56 7.81 -52.49 -0.41 2.15 16 9 S 2.72 73.89 5.26 -107.50 -0.57 73.32 16 10 O -1.00 -29.83 17.70 -57.17 -1.01 -30.84 16 11 O -1.00 -29.25 17.43 -57.17 -1.00 -30.25 16 12 N -1.00 -21.02 3.59 -104.65 -0.38 -21.39 16 13 C 0.13 2.16 7.23 -0.67 0.00 2.15 16 14 C -0.11 -1.38 6.66 -25.44 -0.17 -1.55 16 15 C -0.16 -2.22 3.31 -89.40 -0.30 -2.52 16 16 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 17 C 0.06 0.72 7.31 -3.34 -0.02 0.69 16 18 N -0.68 -9.34 7.55 -111.90 -0.85 -10.18 16 19 C 0.05 0.86 7.23 -3.47 -0.03 0.83 16 20 C 0.14 2.53 2.92 -68.91 -0.20 2.33 16 21 H 0.06 1.04 7.87 -51.93 -0.41 0.64 16 22 H 0.29 7.71 8.31 -40.82 -0.34 7.37 16 23 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 24 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 25 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 26 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 29 H 0.34 3.92 8.94 -39.30 -0.35 3.57 16 30 H 0.10 1.84 8.14 -51.93 -0.42 1.42 16 31 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 271.65 15.07 4.09 4.09 Total: -1.00 -34.33 271.65 -8.62 -42.95 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -4.11 Total: 3.33 kcal Atomic # 6 Polarization: -21.87 SS G_CDS: -0.52 Total: -22.39 kcal Atomic # 7 Polarization: -55.31 SS G_CDS: -0.49 Total: -55.80 kcal Atomic # 8 Polarization: -59.08 SS G_CDS: -2.01 Total: -61.09 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Atomic # 16 Polarization: 73.89 SS G_CDS: -0.57 Total: 73.32 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -34.33 -8.62 -42.95 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306812872.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.432 kcal (2) G-P(sol) polarization free energy of solvation -34.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds