Wall clock time and date at job start Mon Mar 30 2020 03:57:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86793 * 120.00144 * 2 1 4 4 H 1.48499 * 109.47311 * 269.99388 * 3 2 1 5 5 H 1.48501 * 109.47545 * 29.99527 * 3 2 1 6 6 H 1.48500 * 109.47455 * 149.99463 * 3 2 1 7 7 C 1.37877 * 119.99734 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99886 * 180.02562 * 7 2 1 9 9 S 1.76198 * 120.00269 * 0.02562 * 7 2 1 10 10 O 1.42101 * 106.40061 * 66.45553 * 9 7 2 11 11 O 1.42105 * 106.40398 * 293.54212 * 9 7 2 12 12 N 1.65597 * 107.22133 * 179.97438 * 9 7 2 13 13 C 1.49383 * 127.15471 * 269.99996 * 12 9 7 14 14 C 1.56296 * 106.41240 * 171.06188 * 13 12 9 15 15 C 1.52058 * 100.75828 * 336.36284 * 14 13 12 16 16 H 1.08996 * 111.81795 * 285.87543 * 15 14 13 17 17 C 1.51159 * 122.55652 * 149.84068 * 15 14 13 18 18 N 1.49426 * 105.21689 * 220.36951 * 17 15 14 19 19 C 1.50056 * 107.82027 * 7.18268 * 18 17 15 20 20 C 1.42332 * 127.15390 * 89.99944 * 12 9 7 21 21 H 1.09004 * 107.99714 * 105.39210 * 20 12 9 22 22 H 0.97002 * 119.99777 * 0.02562 * 1 2 3 23 23 H 1.08995 * 110.07193 * 290.30104 * 13 12 9 24 24 H 1.08998 * 110.06558 * 51.77550 * 13 12 9 25 25 H 1.08998 * 111.15873 * 94.24118 * 14 13 12 26 26 H 1.09001 * 111.15923 * 218.45013 * 14 13 12 27 27 H 1.08999 * 110.29308 * 101.43236 * 17 15 14 28 28 H 1.09005 * 110.28869 * 339.30238 * 17 15 14 29 29 H 1.00894 * 111.00069 * 245.40605 * 18 17 15 30 30 H 1.08994 * 110.83301 * 142.61521 * 19 18 17 31 31 H 1.09004 * 110.83319 * 266.19881 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4466 2.6527 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 16 1.1235 -2.7200 0.0005 10 8 0.4517 -2.7955 -1.2494 11 8 0.4508 -2.7950 1.2500 12 7 2.2481 -3.9355 0.0005 13 6 2.8609 -4.5977 -1.1901 14 6 4.0147 -5.5016 -0.6475 15 6 4.3206 -4.8102 0.6718 16 1 4.8581 -3.8738 0.5233 17 6 4.8400 -5.5559 1.8797 18 7 4.1191 -4.9631 3.0466 19 6 3.0767 -4.0244 2.5136 20 6 2.8320 -4.5664 1.1349 21 1 2.3855 -5.5555 1.2372 22 1 -0.4850 0.8401 -0.0004 23 1 2.1174 -5.2078 -1.7027 24 1 3.2618 -3.8466 -1.8707 25 1 3.6712 -6.5234 -0.4860 26 1 4.8777 -5.4799 -1.3131 27 1 5.9147 -5.4058 1.9833 28 1 4.6123 -6.6185 1.7947 29 1 4.7590 -4.4819 3.6605 30 1 2.1690 -4.0711 3.1153 31 1 3.4603 -3.0051 2.4671 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306812872.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:01 Heat of formation + Delta-G solvation = -92.162321 kcal Electronic energy + Delta-G solvation = -16979.601100 eV Core-core repulsion = 14193.702535 eV Total energy + Delta-G solvation = -2785.898564 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 246.082 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.24830 -37.49567 -36.36391 -36.20851 -35.22775 -32.28500 -29.21678 -28.33115 -28.21376 -23.28477 -22.78150 -21.35501 -20.58574 -19.11860 -18.17847 -17.70764 -17.11015 -16.30189 -15.96387 -15.84009 -15.52594 -14.98372 -14.26435 -14.13549 -14.02864 -13.60624 -13.32766 -13.08416 -13.05560 -12.81580 -12.58197 -12.50927 -12.34805 -12.31150 -11.93017 -11.71665 -11.29985 -11.22492 -10.97913 -9.77296 -9.52122 -8.79332 -7.54905 0.19116 1.29458 1.30426 1.46524 2.15441 2.52179 2.56774 3.11690 3.27713 3.64151 3.85639 3.88785 4.00246 4.23096 4.32982 4.40701 4.50865 4.57995 4.76403 4.81813 4.95957 5.00185 5.08029 5.15081 5.19287 5.38049 5.43857 5.52782 5.81296 5.92098 6.43204 6.71741 8.16076 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.028171 B = 0.009271 C = 0.008526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.708419 B = 3019.300190 C = 3283.348059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.069 3.931 3 Si 0.992 3.008 4 H -0.253 1.253 5 H -0.261 1.261 6 H -0.248 1.248 7 C -1.037 5.037 8 H 0.116 0.884 9 S 2.726 3.274 10 O -1.041 7.041 11 O -1.033 7.033 12 N -1.005 6.005 13 C 0.111 3.889 14 C -0.091 4.091 15 C -0.137 4.137 16 H 0.080 0.920 17 C 0.062 3.938 18 N -0.675 5.675 19 C 0.048 3.952 20 C 0.110 3.890 21 H 0.060 0.940 22 H 0.300 0.700 23 H 0.069 0.931 24 H 0.071 0.929 25 H 0.094 0.906 26 H 0.111 0.889 27 H 0.090 0.910 28 H 0.092 0.908 29 H 0.353 0.647 30 H 0.073 0.927 31 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.436 -7.870 1.087 15.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.144 4.144 3 Si 0.809 3.191 4 H -0.177 1.177 5 H -0.185 1.185 6 H -0.171 1.171 7 C -1.171 5.171 8 H 0.134 0.866 9 S 2.830 3.170 10 O -1.031 7.031 11 O -1.024 7.024 12 N -0.842 5.842 13 C -0.013 4.013 14 C -0.130 4.130 15 C -0.159 4.159 16 H 0.099 0.901 17 C -0.066 4.066 18 N -0.305 5.305 19 C -0.081 4.081 20 C 0.000 4.000 21 H 0.078 0.922 22 H 0.110 0.890 23 H 0.087 0.913 24 H 0.089 0.911 25 H 0.113 0.887 26 H 0.129 0.871 27 H 0.108 0.892 28 H 0.110 0.890 29 H 0.169 0.831 30 H 0.091 0.909 31 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 11.767 -8.466 1.207 14.546 hybrid contribution 0.578 2.108 -0.318 2.209 sum 12.345 -6.357 0.889 13.914 Atomic orbital electron populations 1.69990 1.08820 1.32466 1.41258 1.26062 0.95415 1.05414 0.87478 0.85110 0.79099 0.74642 0.80200 1.17667 1.18480 1.17109 1.30910 1.06870 1.12461 1.66867 0.86598 0.99731 0.72359 0.73410 0.71502 1.93289 1.74439 1.88334 1.47081 1.93306 1.74097 1.88200 1.46751 1.57803 1.60260 1.53212 1.12935 1.22860 0.95855 0.96070 0.86530 1.22190 0.97219 0.98293 0.95297 1.23189 0.94822 1.01107 0.96745 0.90131 1.22172 0.98041 0.99596 0.86785 1.63252 1.15924 1.33924 1.17426 1.22050 0.97043 0.95097 0.93937 1.20874 0.95170 0.95710 0.88216 0.92200 0.88973 0.91251 0.91054 0.88698 0.87062 0.89179 0.89019 0.83112 0.90889 0.93416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -54.20 13.19 21.45 0.28 -53.92 16 2 C 0.07 3.90 5.46 84.66 0.46 4.36 16 3 Si 0.99 41.51 29.54 68.60 2.03 43.53 16 4 H -0.25 -9.93 7.11 99.48 0.71 -9.23 16 5 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 6 H -0.25 -9.65 7.11 99.48 0.71 -8.94 16 7 C -1.04 -58.34 9.75 67.73 0.66 -57.68 16 8 H 0.12 5.90 7.81 -2.91 -0.02 5.88 16 9 S 2.73 153.28 5.26 -56.49 -0.30 152.98 16 10 O -1.04 -64.66 17.70 -128.00 -2.27 -66.92 16 11 O -1.03 -63.78 17.43 -128.00 -2.23 -66.01 16 12 N -1.00 -42.58 3.59 -485.00 -1.74 -44.32 16 13 C 0.11 3.59 7.23 86.97 0.63 4.22 16 14 C -0.09 -1.97 6.66 31.43 0.21 -1.77 16 15 C -0.14 -3.47 3.31 -10.01 -0.03 -3.50 16 16 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 17 C 0.06 1.26 7.31 85.21 0.62 1.88 16 18 N -0.67 -17.15 7.55 -507.93 -3.84 -20.98 16 19 C 0.05 1.69 7.23 84.77 0.61 2.31 16 20 C 0.11 3.93 2.92 46.54 0.14 4.07 16 21 H 0.06 2.11 7.87 -2.39 -0.02 2.09 16 22 H 0.30 16.26 8.31 -92.71 -0.77 15.49 16 23 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 24 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 25 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 26 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.09 1.66 8.14 -2.38 -0.02 1.64 16 29 H 0.35 7.29 8.94 -89.70 -0.80 6.49 16 30 H 0.07 2.86 8.14 -2.39 -0.02 2.84 16 31 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -77.64 271.65 -4.43 -82.07 By element: Atomic # 1 Polarization: 19.34 SS G_CDS: 0.33 Total: 19.68 kcal Atomic # 6 Polarization: -49.40 SS G_CDS: 3.30 Total: -46.11 kcal Atomic # 7 Polarization: -113.93 SS G_CDS: -5.29 Total: -119.22 kcal Atomic # 8 Polarization: -128.44 SS G_CDS: -4.50 Total: -132.93 kcal Atomic # 14 Polarization: 41.51 SS G_CDS: 2.03 Total: 43.53 kcal Atomic # 16 Polarization: 153.28 SS G_CDS: -0.30 Total: 152.98 kcal Total: -77.64 -4.43 -82.07 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306812872.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.094 kcal (2) G-P(sol) polarization free energy of solvation -77.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds