Wall clock time and date at job start Mon Mar 30 2020 03:28:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30538 * 1 3 3 Si 1.86798 * 119.99890 * 2 1 4 4 H 1.48501 * 109.47066 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47099 * 299.99844 * 3 2 1 6 6 H 1.48501 * 109.47225 * 60.00002 * 3 2 1 7 7 C 1.40324 * 120.00420 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00476 * 180.02562 * 7 2 1 9 9 C 1.46126 * 119.99562 * 0.02562 * 7 2 1 10 10 O 1.21779 * 120.00484 * 6.64476 * 9 7 2 11 11 C 1.47695 * 119.99816 * 186.65227 * 9 7 2 12 12 C 1.40284 * 120.97370 * 85.89472 * 11 9 7 13 13 Cl 1.73602 * 120.56302 * 359.96011 * 12 11 9 14 14 N 1.32273 * 118.87640 * 179.97438 * 12 11 9 15 15 C 1.31884 * 121.00661 * 0.02562 * 14 12 11 16 16 N 1.31882 * 122.18090 * 359.97438 * 15 14 12 17 17 C 1.32277 * 121.00001 * 0.02562 * 16 15 14 18 18 Cl 1.73597 * 120.55568 * 179.97438 * 17 16 15 19 19 H 0.97002 * 120.00387 * 0.02562 * 1 2 3 20 20 H 1.08000 * 118.90821 * 179.71577 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3054 0.0000 0.0000 3 14 2.2393 1.6177 0.0000 4 1 3.6993 1.3464 0.0006 5 1 1.8806 2.3964 -1.2125 6 1 1.8806 2.3965 1.2125 7 6 2.0071 -1.2152 0.0005 8 1 3.0871 -1.2152 0.0010 9 6 1.2765 -2.4807 0.0005 10 8 0.0649 -2.4843 -0.1220 11 6 2.0075 -3.7554 0.1493 12 6 2.3183 -4.2655 1.4186 13 17 1.8507 -3.4076 2.8535 14 7 2.9739 -5.4112 1.5035 15 6 3.3341 -6.0699 0.4192 16 7 3.0632 -5.6280 -0.7935 17 6 2.4113 -4.4914 -0.9746 18 17 2.0613 -3.9203 -2.5762 19 1 -0.4851 0.8400 -0.0004 20 1 3.8723 -6.9999 0.5280 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307096713.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:14 Heat of formation + Delta-G solvation = -27.191670 kcal Electronic energy + Delta-G solvation = -13198.840331 eV Core-core repulsion = 10446.925280 eV Total energy + Delta-G solvation = -2751.915051 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 245.970 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -42.15945 -38.74056 -38.16147 -37.83374 -34.82215 -34.73863 -33.16342 -28.89812 -26.24207 -25.64283 -22.23679 -19.33316 -19.26693 -18.77689 -17.47683 -16.56327 -15.95075 -15.90318 -15.36919 -15.05842 -14.00010 -13.82364 -13.51143 -13.31491 -12.99290 -12.78780 -12.64992 -12.36509 -12.18036 -12.07385 -11.36361 -11.02016 -10.78809 -10.47297 -9.84365 -8.41513 -7.06796 -0.59591 -0.52277 0.22872 0.59311 1.31914 1.40621 1.56560 1.94507 2.19998 2.30664 2.93727 2.97574 3.28234 3.32650 4.09331 4.13471 4.85312 5.18945 5.31192 5.86738 6.44773 6.55854 6.70261 7.97052 8.43601 Molecular weight = 245.97amu Principal moments of inertia in cm(-1) A = 0.022622 B = 0.010890 C = 0.008461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.410019 B = 2570.664640 C = 3308.517041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.785 5.785 2 C 0.037 3.963 3 Si 0.982 3.018 4 H -0.249 1.249 5 H -0.263 1.263 6 H -0.263 1.263 7 C -0.527 4.527 8 H 0.082 0.918 9 C 0.399 3.601 10 O -0.555 6.555 11 C -0.194 4.194 12 C 0.235 3.765 13 Cl 0.009 6.991 14 N -0.513 5.513 15 C 0.326 3.674 16 N -0.513 5.513 17 C 0.234 3.766 18 Cl 0.008 6.992 19 H 0.285 0.715 20 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.540 -5.500 0.899 9.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.182 4.182 3 Si 0.801 3.199 4 H -0.172 1.172 5 H -0.188 1.188 6 H -0.187 1.187 7 C -0.558 4.558 8 H 0.100 0.900 9 C 0.292 3.708 10 O -0.444 6.444 11 C -0.202 4.202 12 C 0.062 3.938 13 Cl 0.038 6.962 14 N -0.230 5.230 15 C 0.040 3.960 16 N -0.230 5.230 17 C 0.061 3.939 18 Cl 0.037 6.963 19 H 0.095 0.905 20 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges 7.192 -6.198 0.927 9.539 hybrid contribution -0.360 1.448 -0.105 1.496 sum 6.832 -4.750 0.822 8.362 Atomic orbital electron populations 1.70006 1.09370 1.30051 1.32002 1.26937 0.95450 1.04496 0.91311 0.85178 0.79670 0.75892 0.79172 1.17238 1.18804 1.18705 1.21858 0.94788 0.90498 1.48677 0.90010 1.19282 0.87725 0.85521 0.78222 1.90528 1.16448 1.88183 1.49217 1.22967 1.02498 1.02311 0.92419 1.22183 0.92825 0.90851 0.87917 1.98428 1.89060 1.73543 1.35206 1.67891 1.12944 1.06436 1.35773 1.26056 0.91837 0.98875 0.79257 1.67888 1.14367 1.12301 1.28494 1.22191 0.92920 0.90547 0.88268 1.98425 1.92177 1.86675 1.19059 0.90463 0.71708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -43.49 11.85 21.88 0.26 -43.23 14 2 C 0.04 1.91 5.51 85.39 0.47 2.38 14 3 Si 0.98 37.69 29.56 68.60 2.03 39.72 14 4 H -0.25 -9.08 7.11 99.48 0.71 -8.37 14 5 H -0.26 -9.72 7.11 99.48 0.71 -9.01 14 6 H -0.26 -9.63 7.11 99.48 0.71 -8.93 14 7 C -0.53 -27.74 9.46 24.83 0.23 -27.50 14 8 H 0.08 4.04 7.85 -2.91 -0.02 4.01 14 9 C 0.40 21.48 4.90 26.82 0.13 21.61 14 10 O -0.55 -34.29 15.82 -4.60 -0.07 -34.36 14 11 C -0.19 -8.86 5.58 -19.78 -0.11 -8.97 14 12 C 0.24 9.57 7.38 85.12 0.63 10.20 14 13 Cl 0.01 0.35 28.35 -2.72 -0.08 0.27 14 14 N -0.51 -17.27 10.42 -189.66 -1.98 -19.24 14 15 C 0.33 9.04 12.27 180.83 2.22 11.26 14 16 N -0.51 -17.25 10.42 -189.67 -1.98 -19.22 14 17 C 0.23 9.48 7.38 85.12 0.63 10.11 14 18 Cl 0.01 0.31 28.35 -2.72 -0.08 0.23 14 19 H 0.28 14.11 8.29 -92.71 -0.77 13.34 14 20 H 0.27 3.99 8.06 -2.91 -0.02 3.97 14 Total: -1.00 -65.35 232.75 3.62 -61.73 By element: Atomic # 1 Polarization: -6.29 SS G_CDS: 1.31 Total: -4.98 kcal Atomic # 6 Polarization: 14.88 SS G_CDS: 4.20 Total: 19.08 kcal Atomic # 7 Polarization: -78.00 SS G_CDS: -3.69 Total: -81.70 kcal Atomic # 8 Polarization: -34.29 SS G_CDS: -0.07 Total: -34.36 kcal Atomic # 14 Polarization: 37.69 SS G_CDS: 2.03 Total: 39.72 kcal Atomic # 17 Polarization: 0.66 SS G_CDS: -0.15 Total: 0.51 kcal Total: -65.35 3.62 -61.73 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307096713.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.543 kcal (2) G-P(sol) polarization free energy of solvation -65.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds