Wall clock time and date at job start Mon Mar 30 2020 03:29:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30944 * 123.03370 * 2 1 4 4 C 1.29525 * 117.42869 * 179.73167 * 3 2 1 5 5 Cl 1.73608 * 124.70645 * 180.02562 * 4 3 2 6 6 S 1.70919 * 110.58853 * 0.02562 * 4 3 2 7 7 C 1.36783 * 123.03200 * 179.70862 * 2 1 3 8 8 C 1.46467 * 126.16526 * 0.23192 * 7 2 1 9 9 O 1.21734 * 120.00469 * 0.02562 * 8 7 2 10 10 N 1.34786 * 120.00003 * 179.97438 * 8 7 2 11 11 C 1.36896 * 120.00011 * 179.97438 * 10 8 7 12 12 H 1.07997 * 120.00058 * 0.02562 * 11 10 8 13 13 C 1.38996 * 120.00052 * 179.97438 * 11 10 8 14 14 N 1.31405 * 119.99632 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 120.00407 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47242 * 89.99937 * 15 13 11 17 17 H 1.48492 * 109.46924 * 210.00306 * 15 13 11 18 18 H 1.48506 * 109.46609 * 330.00091 * 15 13 11 19 19 H 1.09001 * 109.47141 * 90.02534 * 1 2 3 20 20 H 1.09006 * 109.47033 * 210.02398 * 1 2 3 21 21 H 1.09004 * 109.47410 * 330.02159 * 1 2 3 22 22 H 0.96993 * 119.99629 * 359.97438 * 10 8 7 23 23 H 0.97003 * 119.99655 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2208 1.0978 0.0000 4 6 3.5098 0.9713 0.0054 5 17 4.6330 2.2951 0.0071 6 16 3.9517 -0.6798 0.0106 7 6 2.2526 -1.1467 0.0058 8 6 1.7324 -2.5159 0.0080 9 8 0.5307 -2.7106 0.0040 10 7 2.5842 -3.5605 0.0134 11 6 2.0981 -4.8402 0.0159 12 1 1.0320 -5.0128 0.0132 13 6 2.9765 -5.9173 0.0210 14 7 4.2736 -5.7072 0.0237 15 14 2.3132 -7.6636 0.0237 16 1 2.1410 -8.1300 -1.3756 17 1 3.2691 -8.5550 0.7285 18 1 1.0021 -7.6939 0.7205 19 1 -0.3633 -0.0005 -1.0277 20 1 -0.3633 -0.8898 0.5142 21 1 -0.3634 0.8902 0.5135 22 1 3.5417 -3.4054 0.0154 23 1 4.8867 -6.4590 0.0276 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307286763.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:56 Heat of formation + Delta-G solvation = -23.721776 kcal Electronic energy + Delta-G solvation = -13105.314698 eV Core-core repulsion = 10491.426914 eV Total energy + Delta-G solvation = -2613.887784 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 245.997 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.24775 -39.81899 -38.08131 -36.18984 -33.51208 -32.65227 -29.67914 -26.92240 -25.92953 -22.91416 -20.79394 -19.81607 -19.51861 -17.62747 -17.19348 -16.60558 -16.40055 -15.67258 -15.26807 -14.82454 -14.80014 -13.93412 -13.69433 -13.39074 -12.98102 -12.70703 -12.62660 -12.57584 -12.37473 -12.10628 -11.64825 -11.09390 -10.67196 -10.56490 -10.20365 -9.80955 -8.61558 -6.04739 -0.99431 -0.46190 0.35140 0.67746 1.19911 1.44029 1.46356 1.57210 2.20717 2.23444 2.92812 3.15240 3.30875 3.91879 4.22367 4.60047 4.75278 4.84130 5.28808 5.35846 5.80550 6.29264 6.38059 6.93373 7.28005 7.82926 8.55093 Molecular weight = 246.00amu Principal moments of inertia in cm(-1) A = 0.038025 B = 0.006352 C = 0.005459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.190044 B = 4407.207876 C = 5128.252853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.120 3.880 3 N -0.471 5.471 4 C 0.056 3.944 5 Cl 0.050 6.950 6 S 0.263 5.737 7 C -0.278 4.278 8 C 0.499 3.501 9 O -0.605 6.605 10 N -0.546 5.546 11 C -0.330 4.330 12 H 0.095 0.905 13 C -0.008 4.008 14 N -0.905 5.905 15 Si 1.003 2.997 16 H -0.268 1.268 17 H -0.268 1.268 18 H -0.268 1.268 19 H 0.083 0.917 20 H 0.083 0.917 21 H 0.090 0.910 22 H 0.394 0.606 23 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.154 9.746 0.012 10.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.018 4.018 3 N -0.189 5.189 4 C -0.245 4.245 5 Cl 0.078 6.922 6 S 0.515 5.485 7 C -0.403 4.403 8 C 0.287 3.713 9 O -0.494 6.494 10 N -0.180 5.180 11 C -0.460 4.460 12 H 0.113 0.887 13 C -0.211 4.211 14 N -0.543 5.543 15 Si 0.825 3.175 16 H -0.193 1.193 17 H -0.193 1.193 18 H -0.192 1.192 19 H 0.102 0.898 20 H 0.102 0.898 21 H 0.109 0.891 22 H 0.229 0.771 23 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 3.483 9.639 0.018 10.249 hybrid contribution -0.354 -0.413 -0.034 0.545 sum 3.129 9.226 -0.016 9.742 Atomic orbital electron populations 1.20533 0.84777 1.04208 1.03915 1.20857 0.99091 0.83809 0.98037 1.65700 1.03983 1.32141 1.17041 1.27379 0.93027 0.95763 1.08288 1.98417 1.53896 1.43476 1.96424 1.83947 1.03406 0.96209 1.64936 1.26118 0.97078 0.99353 1.17746 1.16588 0.86456 0.82644 0.85643 1.90593 1.15217 1.84747 1.58873 1.41926 1.08594 1.05506 1.61937 1.19899 0.94729 0.81830 1.49545 0.88737 1.26272 0.95142 1.04444 0.95223 1.69659 1.02477 1.35042 1.47171 0.84771 0.78259 0.75479 0.78945 1.19307 1.19306 1.19214 0.89814 0.89815 0.89089 0.77104 0.90448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.51 9.72 71.23 0.69 -1.82 14 2 C 0.12 4.44 6.83 42.35 0.29 4.73 14 3 N -0.47 -16.00 10.50 -180.46 -1.89 -17.89 14 4 C 0.06 1.68 8.02 130.58 1.05 2.73 14 5 Cl 0.05 1.17 29.33 -2.72 -0.08 1.10 14 6 S 0.26 8.35 22.34 -56.49 -1.26 7.08 14 7 C -0.28 -11.18 6.51 24.07 0.16 -11.02 14 8 C 0.50 24.37 7.72 86.38 0.67 25.04 14 9 O -0.61 -32.48 13.89 -4.46 -0.06 -32.54 14 10 N -0.55 -27.75 5.28 -310.80 -1.64 -29.39 14 11 C -0.33 -17.88 9.68 84.08 0.81 -17.06 14 12 H 0.09 5.34 7.15 -2.91 -0.02 5.32 14 13 C -0.01 -0.42 5.50 84.94 0.47 0.04 14 14 N -0.90 -46.13 13.05 21.67 0.28 -45.84 14 15 Si 1.00 40.01 29.55 68.60 2.03 42.04 14 16 H -0.27 -10.37 7.11 99.48 0.71 -9.66 14 17 H -0.27 -10.12 7.11 99.48 0.71 -9.41 14 18 H -0.27 -10.68 7.11 99.48 0.71 -9.97 14 19 H 0.08 2.62 8.14 -2.39 -0.02 2.60 14 20 H 0.08 3.19 6.05 -2.38 -0.01 3.17 14 21 H 0.09 2.52 8.14 -2.39 -0.02 2.50 14 22 H 0.39 19.09 7.07 -92.71 -0.66 18.43 14 23 H 0.29 13.46 8.31 -92.71 -0.77 12.69 14 Total: -1.00 -59.26 244.11 2.13 -57.13 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: 0.62 Total: 15.67 kcal Atomic # 6 Polarization: -1.49 SS G_CDS: 4.13 Total: 2.64 kcal Atomic # 7 Polarization: -89.87 SS G_CDS: -3.25 Total: -93.12 kcal Atomic # 8 Polarization: -32.48 SS G_CDS: -0.06 Total: -32.54 kcal Atomic # 14 Polarization: 40.01 SS G_CDS: 2.03 Total: 42.04 kcal Atomic # 16 Polarization: 8.35 SS G_CDS: -1.26 Total: 7.08 kcal Atomic # 17 Polarization: 1.17 SS G_CDS: -0.08 Total: 1.10 kcal Total: -59.26 2.13 -57.13 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307286763.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.409 kcal (2) G-P(sol) polarization free energy of solvation -59.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds