Wall clock time and date at job start Mon Mar 30 2020 03:46:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86794 * 119.99861 * 2 1 4 4 H 1.48501 * 109.47292 * 239.99747 * 3 2 1 5 5 H 1.48504 * 109.47022 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47023 * 119.99947 * 3 2 1 7 7 C 1.37882 * 120.00287 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00117 * 166.50574 * 7 2 1 9 9 C 1.50700 * 119.99554 * 346.49697 * 7 2 1 10 10 C 1.52991 * 115.55586 * 324.13303 * 9 7 2 11 11 N 1.46503 * 109.47228 * 293.72837 * 10 9 7 12 12 C 1.47179 * 127.30904 * 277.22204 * 11 10 9 13 13 C 1.53209 * 109.13223 * 200.62115 * 12 11 10 14 14 N 1.47574 * 107.95363 * 325.33590 * 13 12 11 15 15 S 1.66961 * 127.30311 * 97.19233 * 11 10 9 16 16 O 1.42092 * 107.11392 * 65.74979 * 15 11 10 17 17 O 1.42101 * 107.11234 * 290.90952 * 15 11 10 18 18 C 1.53007 * 117.49448 * 109.80575 * 9 7 2 19 19 C 1.53009 * 117.49599 * 178.46131 * 9 7 2 20 20 H 0.96996 * 120.00626 * 5.41212 * 1 2 3 21 21 H 1.08999 * 109.47617 * 173.72726 * 10 9 7 22 22 H 1.09004 * 109.47105 * 53.72784 * 10 9 7 23 23 H 1.08996 * 109.54251 * 80.69040 * 12 11 10 24 24 H 1.09002 * 109.53871 * 320.54989 * 12 11 10 25 25 H 1.09000 * 109.76651 * 205.71307 * 13 12 11 26 26 H 1.09002 * 109.76812 * 84.96081 * 13 12 11 27 27 H 0.96998 * 127.96560 * 211.31010 * 14 13 12 28 28 H 1.09007 * 117.49693 * 215.00045 * 18 9 7 29 29 H 1.08996 * 117.50087 * 0.02562 * 18 9 7 30 30 H 1.08997 * 117.49846 * 359.97438 * 19 9 7 31 31 H 1.08993 * 117.49663 * 144.98118 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2840 2.7464 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0622 -1.2068 -0.2188 9 6 1.2823 -2.4812 0.3036 10 6 0.1742 -2.3839 1.3540 11 7 0.7632 -2.0661 2.6572 12 6 1.3697 -3.0048 3.6150 13 6 1.3819 -2.3643 5.0067 14 7 1.6047 -0.9152 4.8386 15 16 0.8896 -0.5619 3.3708 16 8 -0.4317 -0.1172 3.6456 17 8 1.8345 0.1820 2.6137 18 6 1.0783 -3.4662 -0.8493 19 6 2.0951 -3.7766 0.2521 20 1 -0.4851 0.8362 -0.0792 21 1 -0.3525 -3.3362 1.4160 22 1 -0.5268 -1.5987 1.0710 23 1 2.3911 -3.2297 3.3080 24 1 0.7865 -3.9253 3.6422 25 1 2.1864 -2.7943 5.6033 26 1 0.4249 -2.5355 5.4997 27 1 2.0608 -0.3077 5.4418 28 1 0.1545 -4.0449 -0.8594 29 1 1.4668 -3.1834 -1.8276 30 1 3.1520 -3.6977 -0.0022 31 1 1.8405 -4.5591 0.9667 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307338567.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:12 Heat of formation + Delta-G solvation = -16.969130 kcal Electronic energy + Delta-G solvation = -17505.571745 eV Core-core repulsion = 14722.933802 eV Total energy + Delta-G solvation = -2782.637943 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 246.082 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -37.51952 -36.39898 -36.04771 -34.73314 -32.97798 -31.97187 -28.16588 -25.56526 -24.80183 -22.21076 -21.13696 -19.55609 -18.52426 -17.31993 -16.51024 -15.88981 -15.28618 -14.86641 -14.42539 -14.22983 -13.76292 -13.51453 -13.10218 -12.64479 -12.14998 -11.79398 -11.34368 -11.13781 -11.05909 -10.95306 -10.74797 -10.41536 -10.32028 -10.12129 -9.94387 -9.61522 -9.34028 -8.96642 -8.70983 -7.94839 -7.94210 -5.89996 -3.93396 1.32308 3.44407 3.58591 3.59435 3.83552 4.07385 4.50993 4.67333 4.75780 5.08963 5.17473 5.55177 5.66144 5.86238 5.93473 5.97877 6.12551 6.16910 6.43393 6.59478 6.67452 6.71258 6.96693 7.23238 7.31794 7.35600 7.56203 7.71037 8.09258 8.51984 9.00643 9.72312 11.09564 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.021315 B = 0.015636 C = 0.010817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.333727 B = 1790.276596 C = 2587.834687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.086 3.914 3 Si 0.905 3.095 4 H -0.293 1.293 5 H -0.296 1.296 6 H -0.250 1.250 7 C -0.473 4.473 8 H 0.057 0.943 9 C 0.035 3.965 10 C 0.187 3.813 11 N -0.971 5.971 12 C 0.071 3.929 13 C 0.076 3.924 14 N -1.130 6.130 15 S 2.762 3.238 16 O -0.993 6.993 17 O -0.941 6.941 18 C -0.199 4.199 19 C -0.209 4.209 20 H 0.264 0.736 21 H 0.038 0.962 22 H 0.134 0.866 23 H 0.075 0.925 24 H 0.089 0.911 25 H 0.099 0.901 26 H 0.075 0.925 27 H 0.430 0.570 28 H 0.064 0.936 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.913 -5.934 9.582 11.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.115 4.115 3 Si 0.734 3.266 4 H -0.220 1.220 5 H -0.222 1.222 6 H -0.174 1.174 7 C -0.509 4.509 8 H 0.075 0.925 9 C 0.033 3.967 10 C 0.065 3.935 11 N -0.814 5.814 12 C -0.057 4.057 13 C -0.053 4.053 14 N -0.896 5.896 15 S 2.769 3.231 16 O -0.975 6.975 17 O -0.923 6.923 18 C -0.238 4.238 19 C -0.246 4.246 20 H 0.074 0.926 21 H 0.056 0.944 22 H 0.151 0.849 23 H 0.093 0.907 24 H 0.108 0.892 25 H 0.117 0.883 26 H 0.093 0.907 27 H 0.269 0.731 28 H 0.083 0.917 29 H 0.096 0.904 30 H 0.091 0.909 31 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.390 -4.937 9.180 10.516 hybrid contribution 0.904 0.374 0.426 1.067 sum 2.294 -4.563 9.606 10.879 Atomic orbital electron populations 1.69643 1.06202 1.27369 1.51368 1.24830 0.94636 0.99548 0.92462 0.86454 0.80119 0.81804 0.78183 1.22013 1.22187 1.17443 1.20336 0.94667 0.88991 1.46951 0.92487 1.19526 0.95100 0.88869 0.93223 1.21121 0.94691 1.01246 0.76478 1.57064 1.74839 1.23211 1.26287 1.22124 1.00816 0.96171 0.86617 1.22286 1.03359 0.81730 0.97902 1.55638 1.76507 1.15082 1.42414 1.03250 0.74384 0.73016 0.72434 1.93558 1.39721 1.79688 1.84510 1.93638 1.62169 1.69450 1.67020 1.22947 0.98539 1.07188 0.95161 1.22823 0.96391 1.02455 1.02954 0.92576 0.94371 0.84894 0.90708 0.89225 0.88306 0.90723 0.73126 0.91735 0.90365 0.90927 0.91752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.91 10.74 55.43 0.60 -25.32 16 2 C 0.09 2.45 3.57 -17.82 -0.06 2.38 16 3 Si 0.91 23.99 27.35 -169.99 -4.65 19.34 16 4 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 5 H -0.30 -7.77 7.11 56.52 0.40 -7.37 16 6 H -0.25 -6.72 6.60 56.52 0.37 -6.35 16 7 C -0.47 -13.10 8.33 -34.44 -0.29 -13.38 16 8 H 0.06 1.62 7.85 -52.49 -0.41 1.20 16 9 C 0.03 0.84 1.98 -155.66 -0.31 0.54 16 10 C 0.19 4.27 5.84 -4.04 -0.02 4.25 16 11 N -0.97 -19.84 3.36 -113.75 -0.38 -20.22 16 12 C 0.07 1.04 7.20 -3.56 -0.03 1.02 16 13 C 0.08 0.92 7.40 -3.35 -0.02 0.90 16 14 N -1.13 -17.17 7.34 -9.86 -0.07 -17.24 16 15 S 2.76 59.62 6.41 -107.50 -0.69 58.94 16 16 O -0.99 -24.23 18.17 -57.05 -1.04 -25.27 16 17 O -0.94 -23.66 12.41 -57.05 -0.71 -24.37 16 18 C -0.20 -4.41 9.92 -26.69 -0.26 -4.67 16 19 C -0.21 -4.37 9.96 -26.69 -0.27 -4.63 16 20 H 0.26 7.45 8.32 -40.82 -0.34 7.11 16 21 H 0.04 0.76 8.08 -51.93 -0.42 0.35 16 22 H 0.13 3.46 5.45 -51.93 -0.28 3.18 16 23 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 24 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 25 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.43 5.30 8.96 -40.73 -0.37 4.93 16 28 H 0.06 1.31 8.14 -51.92 -0.42 0.88 16 29 H 0.08 1.77 8.14 -51.93 -0.42 1.35 16 30 H 0.07 1.53 8.14 -51.93 -0.42 1.10 16 31 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 264.59 15.07 3.99 3.99 Total: -1.00 -33.35 264.59 -8.24 -41.59 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: -4.03 Total: 2.17 kcal Atomic # 6 Polarization: -12.34 SS G_CDS: -1.26 Total: -13.61 kcal Atomic # 7 Polarization: -62.92 SS G_CDS: 0.14 Total: -62.78 kcal Atomic # 8 Polarization: -47.89 SS G_CDS: -1.74 Total: -49.63 kcal Atomic # 14 Polarization: 23.99 SS G_CDS: -4.65 Total: 19.34 kcal Atomic # 16 Polarization: 59.62 SS G_CDS: -0.69 Total: 58.94 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -33.35 -8.24 -41.59 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307338567.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.623 kcal (2) G-P(sol) polarization free energy of solvation -33.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds