Wall clock time and date at job start Mon Mar 30 2020 03:46:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86794 * 119.99861 * 2 1 4 4 H 1.48501 * 109.47292 * 239.99747 * 3 2 1 5 5 H 1.48504 * 109.47022 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47023 * 119.99947 * 3 2 1 7 7 C 1.37882 * 120.00287 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00117 * 166.50574 * 7 2 1 9 9 C 1.50700 * 119.99554 * 346.49697 * 7 2 1 10 10 C 1.52991 * 115.55586 * 324.13303 * 9 7 2 11 11 N 1.46503 * 109.47228 * 293.72837 * 10 9 7 12 12 C 1.47179 * 127.30904 * 277.22204 * 11 10 9 13 13 C 1.53209 * 109.13223 * 200.62115 * 12 11 10 14 14 N 1.47574 * 107.95363 * 325.33590 * 13 12 11 15 15 S 1.66961 * 127.30311 * 97.19233 * 11 10 9 16 16 O 1.42092 * 107.11392 * 65.74979 * 15 11 10 17 17 O 1.42101 * 107.11234 * 290.90952 * 15 11 10 18 18 C 1.53007 * 117.49448 * 109.80575 * 9 7 2 19 19 C 1.53009 * 117.49599 * 178.46131 * 9 7 2 20 20 H 0.96996 * 120.00626 * 5.41212 * 1 2 3 21 21 H 1.08999 * 109.47617 * 173.72726 * 10 9 7 22 22 H 1.09004 * 109.47105 * 53.72784 * 10 9 7 23 23 H 1.08996 * 109.54251 * 80.69040 * 12 11 10 24 24 H 1.09002 * 109.53871 * 320.54989 * 12 11 10 25 25 H 1.09000 * 109.76651 * 205.71307 * 13 12 11 26 26 H 1.09002 * 109.76812 * 84.96081 * 13 12 11 27 27 H 0.96998 * 127.96560 * 211.31010 * 14 13 12 28 28 H 1.09007 * 117.49693 * 215.00045 * 18 9 7 29 29 H 1.08996 * 117.50087 * 0.02562 * 18 9 7 30 30 H 1.08997 * 117.49846 * 359.97438 * 19 9 7 31 31 H 1.08993 * 117.49663 * 144.98118 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2840 2.7464 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0622 -1.2068 -0.2188 9 6 1.2823 -2.4812 0.3036 10 6 0.1742 -2.3839 1.3540 11 7 0.7632 -2.0661 2.6572 12 6 1.3697 -3.0048 3.6150 13 6 1.3819 -2.3643 5.0067 14 7 1.6047 -0.9152 4.8386 15 16 0.8896 -0.5619 3.3708 16 8 -0.4317 -0.1172 3.6456 17 8 1.8345 0.1820 2.6137 18 6 1.0783 -3.4662 -0.8493 19 6 2.0951 -3.7766 0.2521 20 1 -0.4851 0.8362 -0.0792 21 1 -0.3525 -3.3362 1.4160 22 1 -0.5268 -1.5987 1.0710 23 1 2.3911 -3.2297 3.3080 24 1 0.7865 -3.9253 3.6422 25 1 2.1864 -2.7943 5.6033 26 1 0.4249 -2.5355 5.4997 27 1 2.0608 -0.3077 5.4418 28 1 0.1545 -4.0449 -0.8594 29 1 1.4668 -3.1834 -1.8276 30 1 3.1520 -3.6977 -0.0022 31 1 1.8405 -4.5591 0.9667 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307338567.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:11 Heat of formation + Delta-G solvation = -43.840217 kcal Electronic energy + Delta-G solvation = -17506.736963 eV Core-core repulsion = 14722.933802 eV Total energy + Delta-G solvation = -2783.803161 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 246.082 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.04328 -37.99417 -37.69603 -36.47422 -34.46327 -34.03093 -29.51578 -27.53603 -26.41569 -23.42766 -22.80968 -21.30503 -20.19875 -18.81659 -18.23127 -17.54869 -16.85612 -16.55464 -16.19282 -15.86640 -15.35617 -14.91835 -14.84629 -14.05223 -13.81274 -13.41134 -13.01237 -12.93557 -12.85351 -12.68555 -12.61547 -12.24999 -12.10519 -11.96979 -11.76163 -11.42948 -10.90997 -10.61335 -10.51274 -9.90798 -9.49587 -8.02571 -6.07500 -0.26022 1.37058 1.44855 1.67754 2.11192 2.55387 2.61466 3.16753 3.39263 3.50577 3.78543 4.13944 4.25798 4.46140 4.58044 4.72216 4.75683 4.81531 4.90897 5.01864 5.05406 5.08716 5.26408 5.50325 5.59799 5.69456 6.01303 6.12779 6.29645 6.49857 6.88620 7.58311 8.92936 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.021315 B = 0.015636 C = 0.010817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.333727 B = 1790.276596 C = 2587.834687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.059 3.941 3 Si 0.923 3.077 4 H -0.285 1.285 5 H -0.298 1.298 6 H -0.260 1.260 7 C -0.478 4.478 8 H 0.039 0.961 9 C -0.002 4.002 10 C 0.193 3.807 11 N -0.978 5.978 12 C 0.059 3.941 13 C 0.072 3.928 14 N -1.112 6.112 15 S 2.758 3.242 16 O -1.034 7.034 17 O -0.990 6.990 18 C -0.197 4.197 19 C -0.178 4.178 20 H 0.257 0.743 21 H 0.070 0.930 22 H 0.096 0.904 23 H 0.080 0.920 24 H 0.124 0.876 25 H 0.147 0.853 26 H 0.093 0.907 27 H 0.444 0.556 28 H 0.087 0.913 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.417 -8.513 11.180 14.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.139 4.139 3 Si 0.753 3.247 4 H -0.212 1.212 5 H -0.224 1.224 6 H -0.185 1.185 7 C -0.515 4.515 8 H 0.057 0.943 9 C -0.004 4.004 10 C 0.069 3.931 11 N -0.822 5.822 12 C -0.067 4.067 13 C -0.055 4.055 14 N -0.885 5.885 15 S 2.766 3.234 16 O -1.016 7.016 17 O -0.971 6.971 18 C -0.236 4.236 19 C -0.215 4.215 20 H 0.066 0.934 21 H 0.088 0.912 22 H 0.113 0.887 23 H 0.098 0.902 24 H 0.142 0.858 25 H 0.165 0.835 26 H 0.112 0.888 27 H 0.286 0.714 28 H 0.105 0.895 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 1.915 -7.514 10.789 13.287 hybrid contribution 0.808 1.089 -0.011 1.356 sum 2.723 -6.426 10.779 12.841 Atomic orbital electron populations 1.69779 1.06486 1.26814 1.52801 1.25117 0.94957 1.00725 0.93144 0.86162 0.79679 0.81002 0.77878 1.21185 1.22420 1.18527 1.20522 0.93981 0.90897 1.46092 0.94279 1.19581 0.96962 0.88646 0.95219 1.20801 0.93866 1.01267 0.77134 1.56814 1.75160 1.23886 1.26351 1.22572 1.01232 0.96619 0.86323 1.22660 1.06381 0.79303 0.97141 1.55128 1.76015 1.17116 1.40225 1.02915 0.73629 0.73294 0.73612 1.93506 1.41855 1.80873 1.85360 1.93564 1.62953 1.71295 1.69279 1.22931 1.00028 1.06324 0.94292 1.22831 0.95712 1.00758 1.02228 0.93395 0.91236 0.88666 0.90220 0.85780 0.83529 0.88850 0.71350 0.89511 0.91781 0.91373 0.88218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.82 10.74 21.45 0.23 -53.59 16 2 C 0.06 3.43 3.57 84.66 0.30 3.73 16 3 Si 0.92 49.81 27.35 68.60 1.88 51.68 16 4 H -0.29 -14.72 7.11 99.48 0.71 -14.01 16 5 H -0.30 -15.95 7.11 99.48 0.71 -15.24 16 6 H -0.26 -14.33 6.60 99.48 0.66 -13.67 16 7 C -0.48 -26.64 8.33 25.60 0.21 -26.43 16 8 H 0.04 2.25 7.85 -2.91 -0.02 2.23 16 9 C 0.00 -0.10 1.98 -52.93 -0.10 -0.20 16 10 C 0.19 8.51 5.84 86.38 0.50 9.01 16 11 N -0.98 -38.02 3.36 -513.80 -1.73 -39.75 16 12 C 0.06 1.48 7.20 86.32 0.62 2.10 16 13 C 0.07 1.42 7.40 86.24 0.64 2.06 16 14 N -1.11 -31.00 7.34 -185.10 -1.36 -32.35 16 15 S 2.76 117.87 6.41 -56.49 -0.36 117.51 16 16 O -1.03 -51.07 18.17 -128.12 -2.33 -53.40 16 17 O -0.99 -50.56 12.41 -128.12 -1.59 -52.15 16 18 C -0.20 -8.26 9.92 30.62 0.30 -7.95 16 19 C -0.18 -6.84 9.96 30.62 0.30 -6.54 16 20 H 0.26 14.99 8.32 -92.71 -0.77 14.22 16 21 H 0.07 2.56 8.08 -2.39 -0.02 2.54 16 22 H 0.10 4.98 5.45 -2.38 -0.01 4.97 16 23 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 24 H 0.12 2.30 8.14 -2.39 -0.02 2.28 16 25 H 0.15 1.61 8.14 -2.39 -0.02 1.59 16 26 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.44 9.86 8.96 -92.77 -0.83 9.03 16 28 H 0.09 3.23 8.14 -2.38 -0.02 3.21 16 29 H 0.06 2.83 8.14 -2.39 -0.02 2.81 16 30 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 31 H 0.10 3.14 8.14 -2.39 -0.02 3.12 16 Total: -1.00 -74.82 264.59 -2.22 -77.04 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: 0.26 Total: 9.24 kcal Atomic # 6 Polarization: -27.01 SS G_CDS: 2.78 Total: -24.23 kcal Atomic # 7 Polarization: -122.83 SS G_CDS: -2.85 Total: -125.69 kcal Atomic # 8 Polarization: -101.63 SS G_CDS: -3.92 Total: -105.55 kcal Atomic # 14 Polarization: 49.81 SS G_CDS: 1.88 Total: 51.68 kcal Atomic # 16 Polarization: 117.87 SS G_CDS: -0.36 Total: 117.51 kcal Total: -74.82 -2.22 -77.04 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307338567.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.201 kcal (2) G-P(sol) polarization free energy of solvation -74.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds