Wall clock time and date at job start Mon Mar 30 2020 03:30:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.36954 * 120.00190 * 2 1 4 4 H 1.07996 * 120.00343 * 151.22171 * 3 2 1 5 5 C 1.38982 * 119.99631 * 330.95338 * 3 2 1 6 6 N 1.31415 * 119.99971 * 158.75811 * 5 3 2 7 7 Si 1.86801 * 119.99945 * 338.75332 * 5 3 2 8 8 H 1.48504 * 109.47017 * 93.97699 * 7 5 3 9 9 H 1.48506 * 109.46866 * 213.97614 * 7 5 3 10 10 H 1.48496 * 109.47298 * 333.97665 * 7 5 3 11 11 C 1.34771 * 120.00116 * 179.97438 * 2 1 3 12 12 O 1.21670 * 120.00163 * 175.32065 * 11 2 1 13 13 C 1.47155 * 120.00200 * 355.32403 * 11 2 1 14 14 C 1.35242 * 123.15151 * 184.30551 * 13 11 2 15 15 S 1.70935 * 108.85548 * 179.86947 * 14 13 11 16 16 C 1.70767 * 91.15388 * 0.32532 * 15 14 13 17 17 Cl 1.73591 * 124.71450 * 179.84545 * 16 15 14 18 18 N 1.28777 * 110.56190 * 359.80673 * 16 15 14 19 19 H 1.09004 * 109.47631 * 355.19200 * 1 2 3 20 20 H 1.09006 * 109.47199 * 115.18857 * 1 2 3 21 21 H 1.08997 * 109.47341 * 235.18494 * 1 2 3 22 22 H 0.96993 * 120.00025 * 179.97438 * 6 5 3 23 23 H 1.08005 * 125.57057 * 359.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1297 1.2438 0.4502 5 6 1.5859 2.3139 -0.5844 6 7 2.0068 3.5110 -0.2427 7 14 0.2298 2.1282 -1.8556 8 1 -1.0924 2.2226 -1.1863 9 1 0.3500 3.2074 -2.8688 10 1 0.3539 0.8072 -2.5224 11 6 2.1388 -1.1671 0.0005 12 8 3.3525 -1.1689 -0.0854 13 6 1.4068 -2.4394 0.1050 14 6 2.0211 -3.6408 0.1964 15 16 0.8310 -4.8631 0.3032 16 6 -0.4185 -3.7028 0.2101 17 17 -2.1145 -4.0715 0.2430 18 7 0.0725 -2.5163 0.1128 19 1 -0.3634 1.0240 0.0861 20 1 -0.3634 -0.4374 -0.9300 21 1 -0.3634 -0.5867 0.8437 22 1 1.6136 4.2982 -0.6508 23 1 3.0891 -3.8014 0.2028 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307367120.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:24 Heat of formation + Delta-G solvation = 9.079377 kcal Electronic energy + Delta-G solvation = -13557.714290 eV Core-core repulsion = 10945.248871 eV Total energy + Delta-G solvation = -2612.465419 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 245.997 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.60496 -39.59494 -37.94064 -36.92920 -34.21268 -31.53852 -28.65295 -27.82131 -25.98533 -23.32105 -20.79418 -19.76762 -19.07940 -17.87875 -17.08639 -17.03557 -16.69207 -15.67534 -15.53645 -14.91922 -14.53909 -14.35208 -14.07624 -13.89990 -12.97403 -12.88760 -12.60260 -12.53996 -12.31653 -11.85577 -11.28486 -10.99974 -10.76264 -10.58771 -9.99058 -9.84500 -8.62439 -6.17829 -0.65705 -0.32859 0.38277 0.76640 0.80789 1.19670 1.31505 1.40757 2.10585 2.26030 2.61550 2.95038 3.29679 4.02905 4.12937 4.32581 4.52883 4.60332 4.88921 5.39271 5.89618 6.11719 6.43008 6.76635 7.14058 7.68285 8.53449 Molecular weight = 246.00amu Principal moments of inertia in cm(-1) A = 0.032160 B = 0.008143 C = 0.006775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.425346 B = 3437.555895 C = 4131.724047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.453 5.453 3 C -0.340 4.340 4 H 0.060 0.940 5 C 0.016 3.984 6 N -0.895 5.895 7 Si 0.954 3.046 8 H -0.240 1.240 9 H -0.280 1.280 10 H -0.267 1.267 11 C 0.508 3.492 12 O -0.610 6.610 13 C 0.016 3.984 14 C -0.237 4.237 15 S 0.385 5.615 16 C 0.019 3.981 17 Cl 0.042 6.958 18 N -0.456 5.456 19 H 0.064 0.936 20 H 0.064 0.936 21 H 0.088 0.912 22 H 0.286 0.714 23 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.557 -18.957 0.049 21.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.171 5.171 3 C -0.468 4.468 4 H 0.078 0.922 5 C -0.188 4.188 6 N -0.532 5.532 7 Si 0.776 3.224 8 H -0.165 1.165 9 H -0.207 1.207 10 H -0.192 1.192 11 C 0.297 3.703 12 O -0.497 6.497 13 C -0.118 4.118 14 C -0.380 4.380 15 S 0.637 5.363 16 C -0.284 4.284 17 Cl 0.069 6.931 18 N -0.176 5.176 19 H 0.083 0.917 20 H 0.083 0.917 21 H 0.107 0.893 22 H 0.095 0.905 23 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -10.542 -19.331 0.064 22.018 hybrid contribution 0.223 1.607 -0.499 1.698 sum -10.319 -17.723 -0.435 20.513 Atomic orbital electron populations 1.22237 0.79521 1.01559 1.03273 1.43711 1.06489 1.04674 1.62191 1.18882 1.03853 0.85533 1.38539 0.92247 1.26106 1.00831 0.93704 0.98118 1.69827 1.44146 0.98685 1.40543 0.85847 0.79386 0.78290 0.78864 1.16467 1.20668 1.19184 1.17485 0.86537 0.82867 0.83442 1.90629 1.14676 1.87008 1.57351 1.20004 0.87442 0.95254 1.09130 1.27007 1.08803 0.96161 1.06078 1.82201 0.88599 1.04386 1.61088 1.27615 0.96030 0.94736 1.09984 1.98425 1.05818 1.92168 1.96670 1.67034 1.10996 1.24169 1.15425 0.91743 0.91718 0.89328 0.90457 0.78162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 3.36 6.75 127.77 0.86 4.22 14 2 N -0.45 -24.22 2.74 -662.93 -1.81 -26.03 14 3 C -0.34 -20.88 9.54 84.07 0.80 -20.08 14 4 H 0.06 4.17 7.78 -2.91 -0.02 4.14 14 5 C 0.02 0.94 5.18 84.93 0.44 1.38 14 6 N -0.90 -53.50 13.96 21.67 0.30 -53.19 14 7 Si 0.95 43.62 24.39 68.60 1.67 45.29 14 8 H -0.24 -9.71 6.68 99.48 0.67 -9.05 14 9 H -0.28 -12.40 7.11 99.48 0.71 -11.69 14 10 H -0.27 -12.32 6.71 99.48 0.67 -11.65 14 11 C 0.51 26.15 7.60 86.59 0.66 26.81 14 12 O -0.61 -35.50 16.51 -4.25 -0.07 -35.57 14 13 C 0.02 0.62 6.54 40.52 0.27 0.89 14 14 C -0.24 -6.85 10.62 67.13 0.71 -6.14 14 15 S 0.39 7.05 22.96 -56.49 -1.30 5.75 14 16 C 0.02 0.48 7.98 130.69 1.04 1.53 14 17 Cl 0.04 0.84 29.33 -2.72 -0.08 0.76 14 18 N -0.46 -15.61 6.80 -183.82 -1.25 -16.86 14 19 H 0.06 2.85 4.56 -2.39 -0.01 2.84 14 20 H 0.06 2.68 6.63 -2.38 -0.02 2.67 14 21 H 0.09 3.55 6.63 -2.39 -0.02 3.53 14 22 H 0.29 15.46 8.31 -92.71 -0.77 14.69 14 23 H 0.20 5.39 8.03 -2.91 -0.02 5.37 14 Total: -1.00 -73.82 233.32 3.43 -70.39 By element: Atomic # 1 Polarization: -0.33 SS G_CDS: 1.18 Total: 0.85 kcal Atomic # 6 Polarization: 3.83 SS G_CDS: 4.78 Total: 8.62 kcal Atomic # 7 Polarization: -93.32 SS G_CDS: -2.76 Total: -96.08 kcal Atomic # 8 Polarization: -35.50 SS G_CDS: -0.07 Total: -35.57 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 1.67 Total: 45.29 kcal Atomic # 16 Polarization: 7.05 SS G_CDS: -1.30 Total: 5.75 kcal Atomic # 17 Polarization: 0.84 SS G_CDS: -0.08 Total: 0.76 kcal Total: -73.82 3.43 -70.39 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307367120.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.471 kcal (2) G-P(sol) polarization free energy of solvation -73.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds