Wall clock time and date at job start Mon Mar 30 2020 03:40:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 119.99877 * 2 1 4 4 H 1.48491 * 109.47115 * 269.99907 * 3 2 1 5 5 H 1.48494 * 109.46871 * 30.00232 * 3 2 1 6 6 H 1.48504 * 109.46953 * 150.00004 * 3 2 1 7 7 C 1.37882 * 120.00450 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99589 * 359.97438 * 7 2 1 9 9 C 1.50694 * 120.00348 * 180.02562 * 7 2 1 10 10 H 1.09004 * 110.54240 * 61.39182 * 9 7 2 11 11 C 1.55260 * 110.76529 * 184.21694 * 9 7 2 12 12 C 1.54903 * 101.98852 * 155.29563 * 11 9 7 13 13 C 1.53762 * 104.16040 * 339.26165 * 12 11 9 14 14 C 1.53530 * 109.96349 * 238.03167 * 13 12 11 15 15 C 1.55114 * 106.62459 * 192.73956 * 14 13 12 16 16 S 1.83306 * 102.61986 * 42.03323 * 15 14 13 17 17 O 1.42103 * 109.35308 * 90.26034 * 16 15 14 18 18 O 1.42093 * 109.35165 * 223.46688 * 16 15 14 19 19 C 1.53804 * 109.82161 * 117.91441 * 13 12 11 20 20 O 1.43356 * 107.70844 * 358.10363 * 13 12 11 21 21 H 0.96991 * 120.00470 * 359.97438 * 1 2 3 22 22 H 1.08997 * 110.89266 * 37.16175 * 11 9 7 23 23 H 1.09007 * 111.02399 * 273.48522 * 11 9 7 24 24 H 1.09002 * 110.51598 * 220.55257 * 12 11 9 25 25 H 1.08998 * 110.51729 * 97.96705 * 12 11 9 26 26 H 1.08991 * 110.02552 * 312.03275 * 14 13 12 27 27 H 1.09001 * 110.02289 * 73.45424 * 14 13 12 28 28 H 1.08996 * 110.77336 * 160.31459 * 15 14 13 29 29 H 1.09000 * 110.78042 * 283.55952 * 15 14 13 30 30 H 1.09000 * 110.33408 * 267.05268 * 19 13 12 31 31 H 1.09008 * 110.33570 * 29.27976 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0014 9 6 3.5116 -1.1940 0.0011 10 1 3.8937 -0.7051 0.8973 11 6 4.0621 -2.6418 -0.1051 12 6 5.4635 -2.4087 -0.7224 13 6 5.3602 -1.0212 -1.3769 14 6 5.6777 -1.1236 -2.8755 15 6 5.8739 0.3273 -3.3877 16 16 6.8568 1.0965 -2.0452 17 8 8.2410 0.9288 -2.3195 18 8 6.3402 2.3902 -1.7653 19 6 6.3584 -0.0565 -0.7147 20 8 4.0204 -0.5480 -1.1867 21 1 -0.4850 0.8399 0.0004 22 1 3.4414 -3.2462 -0.7665 23 1 4.1425 -3.1029 0.8794 24 1 5.6822 -3.1693 -1.4719 25 1 6.2280 -2.4085 0.0546 26 1 6.5911 -1.6990 -3.0251 27 1 4.8480 -1.5960 -3.4014 28 1 6.4287 0.3344 -4.3259 29 1 4.9136 0.8295 -3.5043 30 1 5.8769 0.4880 0.0976 31 1 7.2248 -0.6039 -0.3434 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307476549.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:59 Heat of formation + Delta-G solvation = -113.682437 kcal Electronic energy + Delta-G solvation = -17064.063472 eV Core-core repulsion = 14244.938975 eV Total energy + Delta-G solvation = -2819.124498 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 246.076 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.47797 -36.89978 -35.88965 -34.46489 -32.41576 -31.50899 -29.73550 -27.60183 -24.80325 -22.66682 -20.50474 -20.05719 -18.75946 -17.04428 -16.65615 -16.24811 -15.72524 -15.42535 -14.83528 -14.43465 -14.04073 -13.49128 -13.31958 -12.84834 -12.62182 -12.25649 -12.03149 -11.97674 -11.85868 -11.56283 -11.40109 -11.13209 -10.80193 -10.52723 -10.39456 -10.23089 -9.86503 -9.76544 -9.58839 -8.78573 -8.66276 -6.20673 -4.31210 0.19348 2.63584 3.38125 3.41534 3.53694 3.67340 4.05821 4.34385 4.42906 4.51376 4.67192 4.73581 4.96292 5.17064 5.21817 5.41830 5.46796 5.58803 5.76361 5.78273 5.97034 6.02772 6.07735 6.23347 6.42190 6.51396 6.98354 7.46116 7.89589 8.32167 8.78939 9.40907 10.89157 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.027835 B = 0.010550 C = 0.008574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.683431 B = 2653.308602 C = 3264.951761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.085 3.915 3 Si 0.892 3.108 4 H -0.269 1.269 5 H -0.295 1.295 6 H -0.266 1.266 7 C -0.520 4.520 8 H 0.083 0.917 9 C 0.167 3.833 10 H 0.034 0.966 11 C -0.135 4.135 12 C -0.139 4.139 13 C 0.105 3.895 14 C -0.107 4.107 15 C -0.580 4.580 16 S 2.377 3.623 17 O -0.949 6.949 18 O -0.940 6.940 19 C -0.607 4.607 20 O -0.363 6.363 21 H 0.268 0.732 22 H 0.074 0.926 23 H 0.067 0.933 24 H 0.074 0.926 25 H 0.072 0.928 26 H 0.091 0.909 27 H 0.107 0.893 28 H 0.133 0.867 29 H 0.143 0.857 30 H 0.145 0.855 31 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.951 -2.979 -4.089 13.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.121 4.121 3 Si 0.720 3.280 4 H -0.194 1.194 5 H -0.222 1.222 6 H -0.191 1.191 7 C -0.557 4.557 8 H 0.101 0.899 9 C 0.113 3.887 10 H 0.052 0.948 11 C -0.173 4.173 12 C -0.177 4.177 13 C 0.062 3.938 14 C -0.146 4.146 15 C -0.710 4.710 16 S 2.563 3.437 17 O -0.946 6.946 18 O -0.937 6.937 19 C -0.737 4.737 20 O -0.283 6.283 21 H 0.077 0.923 22 H 0.092 0.908 23 H 0.086 0.914 24 H 0.093 0.907 25 H 0.091 0.909 26 H 0.109 0.891 27 H 0.126 0.874 28 H 0.151 0.849 29 H 0.162 0.838 30 H 0.163 0.837 31 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 13.297 -1.907 -4.210 14.077 hybrid contribution -0.069 0.158 0.137 0.220 sum 13.228 -1.749 -4.073 13.951 Atomic orbital electron populations 1.69905 1.06567 1.27664 1.48316 1.25067 0.94748 0.99795 0.92446 0.86574 0.79660 0.82233 0.79492 1.19392 1.22190 1.19103 1.20894 0.87173 0.94996 1.52614 0.89933 1.21421 0.95529 0.87532 0.84264 0.94818 1.23088 0.93731 1.00011 1.00486 1.22939 0.99574 0.95062 1.00147 1.21936 0.86120 0.93004 0.92720 1.22330 1.04538 0.93726 0.93987 1.30546 1.15854 1.08639 1.15970 1.09238 0.76379 0.77476 0.80638 1.93579 1.29540 1.87457 1.84024 1.93604 1.80990 1.35676 1.83413 1.31046 1.09806 1.15637 1.17222 1.89109 1.22443 1.67798 1.48993 0.92257 0.90753 0.91382 0.90682 0.90921 0.89068 0.87425 0.84885 0.83849 0.83723 0.84253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.62 13.96 55.43 0.77 -25.85 16 2 C 0.08 2.42 5.47 -17.82 -0.10 2.32 16 3 Si 0.89 22.78 26.33 -169.99 -4.48 18.31 16 4 H -0.27 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 6 H -0.27 -6.47 6.59 56.52 0.37 -6.10 16 7 C -0.52 -14.17 9.42 -34.44 -0.32 -14.50 16 8 H 0.08 2.39 8.03 -52.49 -0.42 1.97 16 9 C 0.17 3.74 2.49 -26.69 -0.07 3.67 16 10 H 0.03 0.77 7.34 -51.93 -0.38 0.39 16 11 C -0.14 -2.39 6.59 -24.53 -0.16 -2.55 16 12 C -0.14 -1.93 6.23 -25.33 -0.16 -2.09 16 13 C 0.10 1.64 0.85 -89.53 -0.08 1.57 16 14 C -0.11 -1.35 5.27 -25.34 -0.13 -1.48 16 15 C -0.58 -7.28 7.24 38.28 0.28 -7.00 16 16 S 2.38 35.04 6.11 -107.50 -0.66 34.38 16 17 O -0.95 -15.16 18.15 -57.71 -1.05 -16.21 16 18 O -0.94 -17.85 18.14 -57.71 -1.05 -18.90 16 19 C -0.61 -8.60 6.35 37.58 0.24 -8.37 16 20 O -0.36 -7.71 8.36 -35.23 -0.29 -8.01 16 21 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 22 H 0.07 1.35 8.05 -51.93 -0.42 0.93 16 23 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 24 H 0.07 0.86 7.68 -51.93 -0.40 0.46 16 25 H 0.07 0.87 7.35 -51.93 -0.38 0.49 16 26 H 0.09 0.84 8.10 -51.93 -0.42 0.42 16 27 H 0.11 1.36 8.14 -51.93 -0.42 0.93 16 28 H 0.13 1.25 8.14 -51.93 -0.42 0.83 16 29 H 0.14 1.96 8.14 -51.93 -0.42 1.54 16 30 H 0.14 2.24 8.08 -51.93 -0.42 1.82 16 31 H 0.14 1.49 7.52 -51.92 -0.39 1.10 16 LS Contribution 264.78 15.07 3.99 3.99 Total: -1.00 -34.24 264.78 -7.35 -41.59 By element: Atomic # 1 Polarization: 3.21 SS G_CDS: -4.09 Total: -0.87 kcal Atomic # 6 Polarization: -27.93 SS G_CDS: -0.50 Total: -28.43 kcal Atomic # 7 Polarization: -26.62 SS G_CDS: 0.77 Total: -25.85 kcal Atomic # 8 Polarization: -40.73 SS G_CDS: -2.39 Total: -43.12 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -4.48 Total: 18.31 kcal Atomic # 16 Polarization: 35.04 SS G_CDS: -0.66 Total: 34.38 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -34.24 -7.35 -41.59 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307476549.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.095 kcal (2) G-P(sol) polarization free energy of solvation -34.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds