Wall clock time and date at job start Mon Mar 30 2020 03:40:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 119.99877 * 2 1 4 4 H 1.48491 * 109.47115 * 269.99907 * 3 2 1 5 5 H 1.48494 * 109.46871 * 30.00232 * 3 2 1 6 6 H 1.48504 * 109.46953 * 150.00004 * 3 2 1 7 7 C 1.37882 * 120.00450 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99589 * 359.97438 * 7 2 1 9 9 C 1.50694 * 120.00348 * 180.02562 * 7 2 1 10 10 H 1.09004 * 110.54240 * 61.39182 * 9 7 2 11 11 C 1.55260 * 110.76529 * 184.21694 * 9 7 2 12 12 C 1.54903 * 101.98852 * 155.29563 * 11 9 7 13 13 C 1.53762 * 104.16040 * 339.26165 * 12 11 9 14 14 C 1.53530 * 109.96349 * 238.03167 * 13 12 11 15 15 C 1.55114 * 106.62459 * 192.73956 * 14 13 12 16 16 S 1.83306 * 102.61986 * 42.03323 * 15 14 13 17 17 O 1.42103 * 109.35308 * 90.26034 * 16 15 14 18 18 O 1.42093 * 109.35165 * 223.46688 * 16 15 14 19 19 C 1.53804 * 109.82161 * 117.91441 * 13 12 11 20 20 O 1.43356 * 107.70844 * 358.10363 * 13 12 11 21 21 H 0.96991 * 120.00470 * 359.97438 * 1 2 3 22 22 H 1.08997 * 110.89266 * 37.16175 * 11 9 7 23 23 H 1.09007 * 111.02399 * 273.48522 * 11 9 7 24 24 H 1.09002 * 110.51598 * 220.55257 * 12 11 9 25 25 H 1.08998 * 110.51729 * 97.96705 * 12 11 9 26 26 H 1.08991 * 110.02552 * 312.03275 * 14 13 12 27 27 H 1.09001 * 110.02289 * 73.45424 * 14 13 12 28 28 H 1.08996 * 110.77336 * 160.31459 * 15 14 13 29 29 H 1.09000 * 110.78042 * 283.55952 * 15 14 13 30 30 H 1.09000 * 110.33408 * 267.05268 * 19 13 12 31 31 H 1.09008 * 110.33570 * 29.27976 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0014 9 6 3.5116 -1.1940 0.0011 10 1 3.8937 -0.7051 0.8973 11 6 4.0621 -2.6418 -0.1051 12 6 5.4635 -2.4087 -0.7224 13 6 5.3602 -1.0212 -1.3769 14 6 5.6777 -1.1236 -2.8755 15 6 5.8739 0.3273 -3.3877 16 16 6.8568 1.0965 -2.0452 17 8 8.2410 0.9288 -2.3195 18 8 6.3402 2.3902 -1.7653 19 6 6.3584 -0.0565 -0.7147 20 8 4.0204 -0.5480 -1.1867 21 1 -0.4850 0.8399 0.0004 22 1 3.4414 -3.2462 -0.7665 23 1 4.1425 -3.1029 0.8794 24 1 5.6822 -3.1693 -1.4719 25 1 6.2280 -2.4085 0.0546 26 1 6.5911 -1.6990 -3.0251 27 1 4.8480 -1.5960 -3.4014 28 1 6.4287 0.3344 -4.3259 29 1 4.9136 0.8295 -3.5043 30 1 5.8769 0.4880 0.0976 31 1 7.2248 -0.6039 -0.3434 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307476549.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:58 Heat of formation + Delta-G solvation = -140.946342 kcal Electronic energy + Delta-G solvation = -17065.245724 eV Core-core repulsion = 14244.938975 eV Total energy + Delta-G solvation = -2820.306749 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 246.076 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.83402 -38.13220 -37.12647 -35.85986 -34.39107 -32.87448 -30.98543 -29.17792 -26.19546 -23.98746 -22.10742 -21.26138 -19.92960 -19.05359 -17.85528 -17.44107 -17.08387 -16.74508 -16.54607 -15.76734 -15.30821 -14.86670 -14.61304 -14.55261 -14.07952 -13.60511 -13.43154 -13.20267 -13.10245 -12.89823 -12.67753 -12.58673 -12.45935 -12.08578 -11.80930 -11.54659 -11.47488 -11.29497 -11.08933 -10.87161 -10.37675 -8.39960 -6.51096 -0.91958 1.31974 1.38030 1.45781 1.54845 2.29451 2.56720 2.75432 3.02318 3.33915 3.44317 3.58678 3.66678 3.99377 4.02300 4.27570 4.36469 4.46072 4.58100 4.72356 4.79363 4.88435 4.98540 5.03960 5.17513 5.25052 5.47214 5.51273 6.18105 6.31948 6.65084 7.24108 8.74156 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.027835 B = 0.010550 C = 0.008574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.683431 B = 2653.308602 C = 3264.951761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.036 3.964 3 Si 0.937 3.063 4 H -0.274 1.274 5 H -0.294 1.294 6 H -0.250 1.250 7 C -0.522 4.522 8 H 0.051 0.949 9 C 0.162 3.838 10 H 0.031 0.969 11 C -0.134 4.134 12 C -0.127 4.127 13 C 0.086 3.914 14 C -0.107 4.107 15 C -0.567 4.567 16 S 2.380 3.620 17 O -0.962 6.962 18 O -0.993 6.993 19 C -0.602 4.602 20 O -0.391 6.391 21 H 0.268 0.732 22 H 0.063 0.937 23 H 0.081 0.919 24 H 0.109 0.891 25 H 0.101 0.899 26 H 0.138 0.862 27 H 0.108 0.892 28 H 0.170 0.830 29 H 0.128 0.872 30 H 0.129 0.871 31 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.892 -4.235 -4.867 17.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.164 4.164 3 Si 0.763 3.237 4 H -0.199 1.199 5 H -0.221 1.221 6 H -0.174 1.174 7 C -0.560 4.560 8 H 0.069 0.931 9 C 0.106 3.894 10 H 0.048 0.952 11 C -0.172 4.172 12 C -0.166 4.166 13 C 0.044 3.956 14 C -0.145 4.145 15 C -0.700 4.700 16 S 2.569 3.431 17 O -0.959 6.959 18 O -0.990 6.990 19 C -0.733 4.733 20 O -0.311 6.311 21 H 0.078 0.922 22 H 0.081 0.919 23 H 0.100 0.900 24 H 0.128 0.872 25 H 0.119 0.881 26 H 0.156 0.844 27 H 0.127 0.873 28 H 0.188 0.812 29 H 0.147 0.853 30 H 0.147 0.853 31 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 16.276 -3.150 -4.977 17.309 hybrid contribution -0.964 0.437 0.341 1.112 sum 15.312 -2.713 -4.636 16.227 Atomic orbital electron populations 1.70014 1.07986 1.28301 1.51170 1.25747 0.95220 1.02670 0.92809 0.85853 0.79373 0.79207 0.79263 1.19934 1.22098 1.17360 1.21257 0.90395 0.93424 1.50883 0.93084 1.21233 0.92505 0.90945 0.84683 0.95175 1.23012 0.95951 0.96629 1.01577 1.22989 0.97490 0.94527 1.01551 1.22442 0.83569 0.94151 0.95417 1.22505 1.06811 0.93863 0.91369 1.30480 1.14872 1.08258 1.16379 1.09005 0.76085 0.76769 0.81258 1.93557 1.30439 1.87510 1.84368 1.93537 1.81708 1.39187 1.84571 1.31023 1.10764 1.15246 1.16291 1.88979 1.25935 1.68300 1.47912 0.92250 0.91860 0.90041 0.87224 0.88080 0.84396 0.87308 0.81186 0.85313 0.85283 0.80183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.07 13.96 21.45 0.30 -57.77 16 2 C 0.04 2.10 5.47 84.66 0.46 2.56 16 3 Si 0.94 47.57 26.33 68.60 1.81 49.38 16 4 H -0.27 -13.98 7.11 99.48 0.71 -13.28 16 5 H -0.29 -14.68 7.11 99.48 0.71 -13.97 16 6 H -0.25 -11.82 6.59 99.48 0.66 -11.17 16 7 C -0.52 -29.07 9.42 25.60 0.24 -28.83 16 8 H 0.05 3.07 8.03 -2.91 -0.02 3.05 16 9 C 0.16 7.07 2.49 30.62 0.08 7.15 16 10 H 0.03 1.34 7.34 -2.38 -0.02 1.33 16 11 C -0.13 -4.39 6.59 32.02 0.21 -4.18 16 12 C -0.13 -2.90 6.23 31.50 0.20 -2.70 16 13 C 0.09 2.36 0.85 -10.09 -0.01 2.35 16 14 C -0.11 -2.17 5.27 31.50 0.17 -2.00 16 15 C -0.57 -12.28 7.24 72.71 0.53 -11.76 16 16 S 2.38 64.35 6.11 -56.49 -0.35 64.01 16 17 O -0.96 -27.81 18.15 -127.49 -2.31 -30.13 16 18 O -0.99 -37.23 18.14 -127.49 -2.31 -39.54 16 19 C -0.60 -14.93 6.35 72.25 0.46 -14.47 16 20 O -0.39 -15.94 8.36 -148.98 -1.25 -17.18 16 21 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 22 H 0.06 2.19 8.05 -2.39 -0.02 2.17 16 23 H 0.08 2.42 8.14 -2.38 -0.02 2.40 16 24 H 0.11 1.80 7.68 -2.39 -0.02 1.78 16 25 H 0.10 1.77 7.35 -2.39 -0.02 1.76 16 26 H 0.14 1.57 8.10 -2.39 -0.02 1.55 16 27 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 28 H 0.17 2.40 8.14 -2.39 -0.02 2.38 16 29 H 0.13 3.28 8.14 -2.39 -0.02 3.26 16 30 H 0.13 3.72 8.08 -2.39 -0.02 3.70 16 31 H 0.18 2.88 7.52 -2.38 -0.02 2.86 16 Total: -1.00 -77.39 264.78 -0.71 -78.10 By element: Atomic # 1 Polarization: 3.94 SS G_CDS: 1.07 Total: 5.01 kcal Atomic # 6 Polarization: -54.21 SS G_CDS: 2.33 Total: -51.88 kcal Atomic # 7 Polarization: -58.07 SS G_CDS: 0.30 Total: -57.77 kcal Atomic # 8 Polarization: -80.97 SS G_CDS: -5.87 Total: -86.85 kcal Atomic # 14 Polarization: 47.57 SS G_CDS: 1.81 Total: 49.38 kcal Atomic # 16 Polarization: 64.35 SS G_CDS: -0.35 Total: 64.01 kcal Total: -77.39 -0.71 -78.10 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307476549.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.843 kcal (2) G-P(sol) polarization free energy of solvation -77.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds