Wall clock time and date at job start Mon Mar 30 2020 03:41:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86794 * 119.99646 * 2 1 4 4 H 1.48505 * 109.47141 * 269.99744 * 3 2 1 5 5 H 1.48491 * 109.47528 * 30.00129 * 3 2 1 6 6 H 1.48507 * 109.46887 * 150.00137 * 3 2 1 7 7 C 1.37876 * 119.99935 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00253 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99775 * 179.97438 * 7 2 1 10 10 H 1.08992 * 110.27823 * 299.36322 * 9 7 2 11 11 C 1.54977 * 110.30973 * 177.16494 * 9 7 2 12 12 C 1.55370 * 100.98137 * 204.80330 * 11 9 7 13 13 C 1.54086 * 102.15921 * 33.86691 * 12 11 9 14 14 C 1.53567 * 109.71450 * 218.60977 * 13 12 11 15 15 C 1.55100 * 106.62354 * 193.16577 * 14 13 12 16 16 S 1.83308 * 102.61039 * 42.09016 * 15 14 13 17 17 O 1.42098 * 109.35551 * 90.25531 * 16 15 14 18 18 O 1.42101 * 109.35241 * 223.32270 * 16 15 14 19 19 C 1.53854 * 109.57197 * 98.86948 * 13 12 11 20 20 O 1.42897 * 107.94428 * 338.87404 * 13 12 11 21 21 H 0.96995 * 120.00555 * 359.97438 * 1 2 3 22 22 H 1.08999 * 111.11530 * 86.87200 * 11 9 7 23 23 H 1.09000 * 111.11739 * 322.73589 * 11 9 7 24 24 H 1.09003 * 110.86736 * 275.70468 * 12 11 9 25 25 H 1.08996 * 110.86600 * 152.03505 * 12 11 9 26 26 H 1.08994 * 110.03084 * 312.45896 * 14 13 12 27 27 H 1.09004 * 110.02991 * 73.83403 * 14 13 12 28 28 H 1.09003 * 110.78371 * 160.37164 * 15 14 13 29 29 H 1.08997 * 110.78461 * 283.62026 * 15 14 13 30 30 H 1.08995 * 110.33213 * 266.61660 * 19 13 12 31 31 H 1.09005 * 110.33280 * 28.84806 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 1 3.8889 -0.6925 -0.8922 11 6 4.0495 -2.6457 0.0702 12 6 5.4510 -2.4113 0.6988 13 6 5.1904 -1.2170 1.6368 14 6 6.3910 -0.2600 1.6027 15 6 6.2151 0.7151 2.7960 16 16 5.6591 -0.3969 4.1430 17 8 6.7918 -0.8841 4.8492 18 8 4.5937 0.2196 4.8530 19 6 4.9927 -1.7251 3.0755 20 8 4.0109 -0.5501 1.1831 21 1 -0.4851 0.8400 0.0004 22 1 4.1334 -3.0827 -0.9248 23 1 3.4272 -3.2637 0.7174 24 1 6.1815 -2.1511 -0.0673 25 1 5.7741 -3.2856 1.2639 26 1 7.3189 -0.8211 1.7128 27 1 6.3996 0.2949 0.6645 28 1 7.1631 1.1884 3.0517 29 1 5.4574 1.4663 2.5732 30 1 3.9334 -1.8800 3.2802 31 1 5.5484 -2.6500 3.2302 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307476551.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:02 Heat of formation + Delta-G solvation = -111.969105 kcal Electronic energy + Delta-G solvation = -17029.641429 eV Core-core repulsion = 14210.591227 eV Total energy + Delta-G solvation = -2819.050202 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 246.076 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.42765 -36.83025 -35.82923 -34.45560 -32.37268 -31.53881 -29.75236 -27.39822 -24.81752 -22.65613 -20.62669 -19.85567 -18.70995 -16.96695 -16.62798 -16.52291 -15.60523 -15.23316 -14.90839 -14.28782 -13.95676 -13.58303 -12.91319 -12.74445 -12.70364 -12.41794 -12.12229 -11.93762 -11.82112 -11.61979 -11.21372 -11.19442 -10.86291 -10.41936 -10.34315 -10.16163 -9.96785 -9.77738 -9.49319 -8.63703 -8.49277 -6.18179 -4.27798 0.25994 2.70472 3.32024 3.38364 3.57691 3.73848 4.09030 4.41120 4.44992 4.58263 4.74766 4.76001 5.01119 5.14355 5.23831 5.45577 5.50057 5.64389 5.80782 5.81452 5.94726 6.01572 6.11623 6.21128 6.40402 6.52726 7.05740 7.49948 8.03217 8.34550 8.82824 9.44876 10.92290 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.027698 B = 0.009831 C = 0.008646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.661257 B = 2847.396760 C = 3237.566273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.085 3.915 3 Si 0.866 3.134 4 H -0.284 1.284 5 H -0.289 1.289 6 H -0.222 1.222 7 C -0.528 4.528 8 H 0.079 0.921 9 C 0.171 3.829 10 H 0.033 0.967 11 C -0.135 4.135 12 C -0.140 4.140 13 C 0.105 3.895 14 C -0.120 4.120 15 C -0.581 4.581 16 S 2.380 3.620 17 O -0.952 6.952 18 O -0.939 6.939 19 C -0.588 4.588 20 O -0.361 6.361 21 H 0.267 0.733 22 H 0.069 0.931 23 H 0.074 0.926 24 H 0.074 0.926 25 H 0.075 0.925 26 H 0.088 0.912 27 H 0.099 0.901 28 H 0.130 0.870 29 H 0.141 0.859 30 H 0.152 0.848 31 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.013 -1.847 2.392 14.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.120 4.120 3 Si 0.692 3.308 4 H -0.210 1.210 5 H -0.215 1.215 6 H -0.145 1.145 7 C -0.564 4.564 8 H 0.097 0.903 9 C 0.116 3.884 10 H 0.050 0.950 11 C -0.173 4.173 12 C -0.179 4.179 13 C 0.063 3.937 14 C -0.159 4.159 15 C -0.711 4.711 16 S 2.565 3.435 17 O -0.949 6.949 18 O -0.936 6.936 19 C -0.718 4.718 20 O -0.281 6.281 21 H 0.076 0.924 22 H 0.088 0.912 23 H 0.093 0.907 24 H 0.093 0.907 25 H 0.094 0.906 26 H 0.107 0.893 27 H 0.118 0.882 28 H 0.148 0.852 29 H 0.159 0.841 30 H 0.170 0.830 31 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 13.802 -1.469 3.513 14.318 hybrid contribution 0.221 0.653 -0.930 1.158 sum 14.024 -0.816 2.582 14.283 Atomic orbital electron populations 1.69908 1.06705 1.27615 1.48235 1.25061 0.94683 0.99832 0.92447 0.87041 0.82887 0.82576 0.78264 1.21045 1.21481 1.14550 1.21016 0.87643 0.94891 1.52876 0.90272 1.21085 0.95325 0.87836 0.84121 0.94968 1.23160 0.93712 0.99818 1.00563 1.23129 0.99345 0.96868 0.98537 1.21903 0.88558 0.92172 0.91058 1.22547 0.98152 0.95938 0.99252 1.30535 1.12154 1.12867 1.15537 1.09170 0.76084 0.79818 0.78380 1.93572 1.51057 1.79936 1.70337 1.93607 1.54983 1.74839 1.70137 1.30799 1.14588 1.15996 1.10452 1.88941 1.38204 1.54252 1.46750 0.92364 0.91198 0.90724 0.90709 0.90631 0.89330 0.88218 0.85150 0.84065 0.83009 0.84530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.75 13.96 55.43 0.77 -25.98 16 2 C 0.08 2.41 5.47 -17.82 -0.10 2.31 16 3 Si 0.87 21.08 27.07 -169.99 -4.60 16.48 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.22 -5.03 5.38 56.52 0.30 -4.73 16 7 C -0.53 -14.30 9.39 -34.44 -0.32 -14.62 16 8 H 0.08 2.30 8.01 -52.49 -0.42 1.88 16 9 C 0.17 3.74 2.69 -26.84 -0.07 3.67 16 10 H 0.03 0.70 7.63 -51.93 -0.40 0.31 16 11 C -0.13 -2.35 6.53 -24.43 -0.16 -2.51 16 12 C -0.14 -1.93 6.07 -24.91 -0.15 -2.08 16 13 C 0.11 1.64 0.94 -89.31 -0.08 1.55 16 14 C -0.12 -1.51 5.34 -25.33 -0.14 -1.64 16 15 C -0.58 -7.31 7.25 38.27 0.28 -7.03 16 16 S 2.38 34.68 6.11 -107.50 -0.66 34.03 16 17 O -0.95 -15.25 18.15 -57.73 -1.05 -16.30 16 18 O -0.94 -17.69 18.15 -57.73 -1.05 -18.74 16 19 C -0.59 -8.26 6.47 37.60 0.24 -8.01 16 20 O -0.36 -7.53 7.30 -35.23 -0.26 -7.79 16 21 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 22 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 23 H 0.07 1.36 8.04 -51.93 -0.42 0.94 16 24 H 0.07 0.89 7.85 -51.93 -0.41 0.48 16 25 H 0.08 0.86 7.37 -51.93 -0.38 0.48 16 26 H 0.09 0.83 8.11 -51.93 -0.42 0.41 16 27 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 28 H 0.13 1.24 8.14 -51.93 -0.42 0.82 16 29 H 0.14 1.93 8.14 -51.93 -0.42 1.51 16 30 H 0.15 2.34 8.08 -51.93 -0.42 1.92 16 31 H 0.14 1.47 7.42 -51.93 -0.39 1.09 16 LS Contribution 263.86 15.07 3.98 3.98 Total: -1.00 -34.46 263.86 -7.54 -42.00 By element: Atomic # 1 Polarization: 4.87 SS G_CDS: -4.17 Total: 0.70 kcal Atomic # 6 Polarization: -27.87 SS G_CDS: -0.50 Total: -28.37 kcal Atomic # 7 Polarization: -26.75 SS G_CDS: 0.77 Total: -25.98 kcal Atomic # 8 Polarization: -40.47 SS G_CDS: -2.35 Total: -42.82 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.60 Total: 16.48 kcal Atomic # 16 Polarization: 34.68 SS G_CDS: -0.66 Total: 34.03 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -34.46 -7.54 -42.00 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307476551.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.969 kcal (2) G-P(sol) polarization free energy of solvation -34.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds