Wall clock time and date at job start Mon Mar 30 2020 03:55:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 119.99753 * 2 1 4 4 H 1.48498 * 109.47306 * 240.00769 * 3 2 1 5 5 H 1.48497 * 109.46853 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47206 * 120.00565 * 3 2 1 7 7 C 1.37878 * 120.00371 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99806 * 179.97438 * 7 2 1 9 9 S 1.76196 * 119.99883 * 359.97438 * 7 2 1 10 10 O 1.42100 * 106.40367 * 66.46165 * 9 7 2 11 11 O 1.42098 * 106.40156 * 293.53952 * 9 7 2 12 12 N 1.65606 * 107.21815 * 180.02562 * 9 7 2 13 13 C 1.47657 * 121.53656 * 89.99858 * 12 9 7 14 14 C 1.54118 * 107.07501 * 140.28033 * 13 12 9 15 15 H 1.08990 * 114.76320 * 199.77866 * 14 13 12 16 16 C 1.54650 * 110.76326 * 333.05913 * 14 13 12 17 17 C 1.54284 * 85.94597 * 80.90256 * 16 14 13 18 18 H 1.08999 * 115.57425 * 146.32911 * 17 16 14 19 19 C 1.47872 * 121.54782 * 270.15342 * 12 9 7 20 20 C 1.54092 * 85.75844 * 29.95701 * 17 16 14 21 21 N 1.46905 * 113.77565 * 84.28199 * 20 17 16 22 22 H 0.96990 * 120.00277 * 359.97438 * 1 2 3 23 23 H 1.08998 * 109.93303 * 20.88524 * 13 12 9 24 24 H 1.09001 * 109.93058 * 259.66792 * 13 12 9 25 25 H 1.08995 * 113.80974 * 326.64896 * 16 14 13 26 26 H 1.08998 * 113.78320 * 195.15709 * 16 14 13 27 27 H 1.08996 * 109.92529 * 100.34852 * 19 12 9 28 28 H 1.09002 * 109.98116 * 339.10653 * 19 12 9 29 29 H 1.09002 * 113.77650 * 215.58575 * 20 17 16 30 30 H 1.00901 * 110.99869 * 182.03422 * 21 20 17 31 31 H 1.00896 * 110.99543 * 305.98544 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6966 -1.2126 5 1 1.2840 2.7464 0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 16 1.1237 -2.7200 -0.0005 10 8 0.4511 -2.7950 -1.2500 11 8 0.4521 -2.7955 1.2494 12 7 2.2486 -3.9354 -0.0005 13 6 2.7732 -4.5021 1.2580 14 6 2.8990 -6.0242 1.0510 15 1 2.9461 -6.6076 1.9704 16 6 1.8848 -6.5194 -0.0063 17 6 2.9018 -6.0231 -1.0549 18 1 2.9514 -6.6057 -1.9748 19 6 2.7766 -4.5009 -1.2607 20 6 3.9765 -6.3523 -0.0007 21 7 4.3944 -7.7607 -0.0009 22 1 -0.4850 0.8399 0.0004 23 1 2.0829 -4.2941 2.0754 24 1 3.7515 -4.0750 1.4785 25 1 0.9457 -5.9661 -0.0082 26 1 1.7436 -7.6002 -0.0076 27 1 3.7554 -4.0735 -1.4782 28 1 2.0884 -4.2920 -2.0798 29 1 4.8176 -5.6590 0.0007 30 1 5.0728 -7.9366 0.7251 31 1 3.5986 -8.3740 0.0916 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307672919.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:55:09 Heat of formation + Delta-G solvation = -57.624313 kcal Electronic energy + Delta-G solvation = -16862.403750 eV Core-core repulsion = 14078.002866 eV Total energy + Delta-G solvation = -2784.400884 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 246.082 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.51341 -35.27588 -34.18206 -33.94773 -33.05064 -30.64228 -29.64738 -26.11482 -25.05783 -22.97321 -22.21730 -18.85646 -17.98327 -17.37662 -16.48292 -15.98956 -15.13281 -14.72979 -14.64057 -14.41118 -13.81092 -13.59152 -13.32111 -12.87267 -12.26298 -11.97778 -11.92497 -11.28494 -11.20449 -11.07810 -10.96549 -10.62383 -10.30403 -10.25776 -10.18707 -10.12642 -9.82482 -9.23838 -8.92952 -8.62274 -8.19788 -6.69343 -5.31785 2.24852 3.08410 3.12659 3.18336 4.05070 4.34484 4.46116 4.63629 4.66484 4.78861 4.86782 5.09192 5.38434 5.55396 5.82311 5.84862 5.86598 5.91674 6.10556 6.17606 6.18999 6.22708 6.34200 6.39447 6.40773 6.86235 7.10623 7.32751 7.36387 7.53469 7.97400 8.89123 10.24193 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.044237 B = 0.007538 C = 0.007206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.806941 B = 3713.707016 C = 3884.643430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.847 5.847 2 C 0.132 3.868 3 Si 0.920 3.080 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.264 1.264 7 C -1.021 5.021 8 H 0.101 0.899 9 S 2.719 3.281 10 O -1.003 7.003 11 O -1.004 7.004 12 N -1.016 6.016 13 C 0.143 3.857 14 C -0.158 4.158 15 H 0.084 0.916 16 C -0.132 4.132 17 C -0.114 4.114 18 H 0.093 0.907 19 C 0.140 3.860 20 C 0.074 3.926 21 N -0.829 5.829 22 H 0.291 0.709 23 H 0.092 0.908 24 H 0.062 0.938 25 H 0.073 0.927 26 H 0.076 0.924 27 H 0.064 0.936 28 H 0.095 0.905 29 H 0.090 0.910 30 H 0.341 0.659 31 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.780 -10.184 0.996 12.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C -0.085 4.085 3 Si 0.744 3.256 4 H -0.188 1.188 5 H -0.201 1.201 6 H -0.189 1.189 7 C -1.155 5.155 8 H 0.119 0.881 9 S 2.821 3.179 10 O -0.993 6.993 11 O -0.995 6.995 12 N -0.852 5.852 13 C 0.016 3.984 14 C -0.180 4.180 15 H 0.102 0.898 16 C -0.170 4.170 17 C -0.135 4.135 18 H 0.112 0.888 19 C 0.014 3.986 20 C -0.038 4.038 21 N -0.357 5.357 22 H 0.102 0.898 23 H 0.110 0.890 24 H 0.080 0.920 25 H 0.092 0.908 26 H 0.094 0.906 27 H 0.082 0.918 28 H 0.113 0.887 29 H 0.108 0.892 30 H 0.154 0.846 31 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 6.931 -10.097 0.250 12.249 hybrid contribution 0.597 1.184 1.023 1.675 sum 7.528 -8.913 1.274 11.736 Atomic orbital electron populations 1.69884 1.06780 1.30840 1.40140 1.24757 0.94466 1.00805 0.88503 0.86206 0.79895 0.79709 0.79775 1.18841 1.20089 1.18887 1.30617 1.06098 1.11953 1.66809 0.88061 1.00362 0.71990 0.72829 0.72756 1.93347 1.72695 1.87547 1.45755 1.93343 1.72771 1.87563 1.45776 1.58676 1.62092 1.54592 1.09816 1.21291 0.99584 0.90376 0.87136 1.23962 0.99042 0.97423 0.97603 0.89813 1.23113 0.98306 0.99457 0.96102 1.23174 0.95995 0.96667 0.97618 0.88841 1.21406 0.99728 0.90491 0.87010 1.22896 0.95717 0.89597 0.95622 1.58698 1.18301 1.03951 1.54749 0.89829 0.88977 0.92025 0.90829 0.90585 0.91818 0.88677 0.89236 0.84615 0.84713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -25.08 13.19 55.43 0.73 -24.34 16 2 C 0.13 3.72 5.46 -17.82 -0.10 3.63 16 3 Si 0.92 20.69 29.54 -169.99 -5.02 15.67 16 4 H -0.26 -5.73 7.11 56.52 0.40 -5.33 16 5 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 6 H -0.26 -5.73 7.11 56.52 0.40 -5.33 16 7 C -1.02 -28.30 9.75 30.60 0.30 -28.00 16 8 H 0.10 2.57 7.81 -52.49 -0.41 2.16 16 9 S 2.72 72.34 5.06 -107.50 -0.54 71.79 16 10 O -1.00 -29.21 16.74 -57.17 -0.96 -30.17 16 11 O -1.00 -29.23 16.73 -57.17 -0.96 -30.18 16 12 N -1.02 -20.49 2.67 -111.18 -0.30 -20.78 16 13 C 0.14 2.43 6.53 -2.82 -0.02 2.41 16 14 C -0.16 -2.15 4.86 -88.61 -0.43 -2.58 16 15 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 16 C -0.13 -1.90 6.91 -25.27 -0.17 -2.07 16 17 C -0.11 -1.62 4.88 -88.81 -0.43 -2.06 16 18 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 19 C 0.14 2.41 6.54 -2.70 -0.02 2.39 16 20 C 0.07 0.92 4.46 -66.64 -0.30 0.62 16 21 N -0.83 -8.45 9.65 -3.76 -0.04 -8.48 16 22 H 0.29 7.76 8.31 -40.82 -0.34 7.42 16 23 H 0.09 1.68 7.07 -51.93 -0.37 1.32 16 24 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 25 H 0.07 1.27 7.61 -51.93 -0.39 0.87 16 26 H 0.08 0.90 7.16 -51.93 -0.37 0.52 16 27 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.09 1.75 7.09 -51.93 -0.37 1.38 16 29 H 0.09 1.14 8.08 -51.93 -0.42 0.72 16 30 H 0.34 2.85 9.08 -39.29 -0.36 2.50 16 31 H 0.34 3.15 7.59 -39.29 -0.30 2.85 16 LS Contribution 266.66 15.07 4.02 4.02 Total: -1.00 -34.10 266.66 -8.05 -42.15 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -3.81 Total: 6.00 kcal Atomic # 6 Polarization: -24.49 SS G_CDS: -1.17 Total: -25.66 kcal Atomic # 7 Polarization: -54.01 SS G_CDS: 0.40 Total: -53.61 kcal Atomic # 8 Polarization: -58.44 SS G_CDS: -1.91 Total: -60.35 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Atomic # 16 Polarization: 72.34 SS G_CDS: -0.54 Total: 71.79 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -34.10 -8.05 -42.15 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307672919.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.476 kcal (2) G-P(sol) polarization free energy of solvation -34.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds