Wall clock time and date at job start Mon Mar 30 2020 03:55:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 119.99753 * 2 1 4 4 H 1.48498 * 109.47306 * 240.00769 * 3 2 1 5 5 H 1.48497 * 109.46853 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47206 * 120.00565 * 3 2 1 7 7 C 1.37878 * 120.00371 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99806 * 179.97438 * 7 2 1 9 9 S 1.76196 * 119.99883 * 359.97438 * 7 2 1 10 10 O 1.42100 * 106.40367 * 66.46165 * 9 7 2 11 11 O 1.42098 * 106.40156 * 293.53952 * 9 7 2 12 12 N 1.65606 * 107.21815 * 180.02562 * 9 7 2 13 13 C 1.47657 * 121.53656 * 89.99858 * 12 9 7 14 14 C 1.54118 * 107.07501 * 140.28033 * 13 12 9 15 15 H 1.08990 * 114.76320 * 199.77866 * 14 13 12 16 16 C 1.54650 * 110.76326 * 333.05913 * 14 13 12 17 17 C 1.54284 * 85.94597 * 80.90256 * 16 14 13 18 18 H 1.08999 * 115.57425 * 146.32911 * 17 16 14 19 19 C 1.47872 * 121.54782 * 270.15342 * 12 9 7 20 20 C 1.54092 * 85.75844 * 29.95701 * 17 16 14 21 21 N 1.46905 * 113.77565 * 84.28199 * 20 17 16 22 22 H 0.96990 * 120.00277 * 359.97438 * 1 2 3 23 23 H 1.08998 * 109.93303 * 20.88524 * 13 12 9 24 24 H 1.09001 * 109.93058 * 259.66792 * 13 12 9 25 25 H 1.08995 * 113.80974 * 326.64896 * 16 14 13 26 26 H 1.08998 * 113.78320 * 195.15709 * 16 14 13 27 27 H 1.08996 * 109.92529 * 100.34852 * 19 12 9 28 28 H 1.09002 * 109.98116 * 339.10653 * 19 12 9 29 29 H 1.09002 * 113.77650 * 215.58575 * 20 17 16 30 30 H 1.00901 * 110.99869 * 182.03422 * 21 20 17 31 31 H 1.00896 * 110.99543 * 305.98544 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6966 -1.2126 5 1 1.2840 2.7464 0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 16 1.1237 -2.7200 -0.0005 10 8 0.4511 -2.7950 -1.2500 11 8 0.4521 -2.7955 1.2494 12 7 2.2486 -3.9354 -0.0005 13 6 2.7732 -4.5021 1.2580 14 6 2.8990 -6.0242 1.0510 15 1 2.9461 -6.6076 1.9704 16 6 1.8848 -6.5194 -0.0063 17 6 2.9018 -6.0231 -1.0549 18 1 2.9514 -6.6057 -1.9748 19 6 2.7766 -4.5009 -1.2607 20 6 3.9765 -6.3523 -0.0007 21 7 4.3944 -7.7607 -0.0009 22 1 -0.4850 0.8399 0.0004 23 1 2.0829 -4.2941 2.0754 24 1 3.7515 -4.0750 1.4785 25 1 0.9457 -5.9661 -0.0082 26 1 1.7436 -7.6002 -0.0076 27 1 3.7554 -4.0735 -1.4782 28 1 2.0884 -4.2920 -2.0798 29 1 4.8176 -5.6590 0.0007 30 1 5.0728 -7.9366 0.7251 31 1 3.5986 -8.3740 0.0916 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307672919.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:55:09 Heat of formation + Delta-G solvation = -86.153734 kcal Electronic energy + Delta-G solvation = -16863.640879 eV Core-core repulsion = 14078.002866 eV Total energy + Delta-G solvation = -2785.638013 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 246.082 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.68541 -37.47692 -36.16954 -35.53497 -35.10752 -31.71479 -30.94391 -28.27364 -26.29263 -24.21053 -23.45684 -20.85609 -19.60146 -18.65960 -18.40995 -17.34004 -16.86583 -16.49013 -16.04263 -15.78500 -15.40362 -15.11650 -14.62456 -14.21918 -14.00971 -13.63397 -13.28766 -13.17737 -13.01613 -12.67014 -12.54933 -12.47793 -12.33987 -12.09103 -11.64484 -11.35704 -11.25901 -11.07790 -10.91874 -9.80360 -9.50851 -8.76381 -7.51393 0.27185 1.31831 1.34280 1.47486 2.18691 2.55282 2.77132 3.39791 3.53079 3.61602 3.68970 3.79756 3.99847 4.10535 4.41200 4.44009 4.53214 4.71308 4.80596 4.82728 4.88603 4.95553 5.01639 5.12162 5.15835 5.24310 5.55530 5.87832 5.90117 6.26410 6.67378 6.75394 8.18521 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.044237 B = 0.007538 C = 0.007206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.806941 B = 3713.707016 C = 3884.643430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.068 3.932 3 Si 0.991 3.009 4 H -0.250 1.250 5 H -0.263 1.263 6 H -0.249 1.249 7 C -1.043 5.043 8 H 0.119 0.881 9 S 2.722 3.278 10 O -1.041 7.041 11 O -1.042 7.042 12 N -1.012 6.012 13 C 0.131 3.869 14 C -0.152 4.152 15 H 0.111 0.889 16 C -0.139 4.139 17 C -0.115 4.115 18 H 0.109 0.891 19 C 0.130 3.870 20 C 0.096 3.904 21 N -0.825 5.825 22 H 0.299 0.701 23 H 0.071 0.929 24 H 0.083 0.917 25 H 0.034 0.966 26 H 0.108 0.892 27 H 0.084 0.916 28 H 0.074 0.926 29 H 0.094 0.906 30 H 0.356 0.644 31 H 0.348 0.652 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.442 -10.940 1.199 15.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.144 4.144 3 Si 0.808 3.192 4 H -0.173 1.173 5 H -0.187 1.187 6 H -0.173 1.173 7 C -1.176 5.176 8 H 0.137 0.863 9 S 2.825 3.175 10 O -1.032 7.032 11 O -1.032 7.032 12 N -0.851 5.851 13 C 0.005 3.995 14 C -0.174 4.174 15 H 0.129 0.871 16 C -0.177 4.177 17 C -0.135 4.135 18 H 0.128 0.872 19 C 0.005 3.995 20 C -0.017 4.017 21 N -0.354 5.354 22 H 0.109 0.891 23 H 0.089 0.911 24 H 0.102 0.898 25 H 0.053 0.947 26 H 0.126 0.874 27 H 0.102 0.898 28 H 0.092 0.908 29 H 0.112 0.888 30 H 0.170 0.830 31 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 9.592 -10.886 0.460 14.516 hybrid contribution -0.228 1.305 0.954 1.633 sum 9.364 -9.581 1.414 13.471 Atomic orbital electron populations 1.69985 1.08836 1.32442 1.41482 1.26067 0.95396 1.05490 0.87495 0.85158 0.78800 0.74400 0.80799 1.17317 1.18683 1.17309 1.30998 1.07145 1.12815 1.66684 0.86319 0.99845 0.72664 0.73621 0.71382 1.93283 1.74537 1.88336 1.46999 1.93280 1.74581 1.88345 1.46978 1.58121 1.61382 1.53338 1.12250 1.21591 0.99743 0.93166 0.84962 1.23943 0.99527 0.94817 0.99133 0.87111 1.23234 0.96642 1.00955 0.96838 1.23135 0.97197 0.94231 0.98962 0.87244 1.21658 0.99818 0.93057 0.84976 1.22653 0.94798 0.91070 0.93211 1.58643 1.18872 1.02451 1.55474 0.89070 0.91094 0.89849 0.94703 0.87396 0.89798 0.90806 0.88847 0.82952 0.83808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.48 13.19 21.45 0.28 -54.20 16 2 C 0.07 3.85 5.46 84.65 0.46 4.31 16 3 Si 0.99 41.67 29.54 68.60 2.03 43.70 16 4 H -0.25 -9.84 7.11 99.48 0.71 -9.13 16 5 H -0.26 -10.36 7.11 99.48 0.71 -9.66 16 6 H -0.25 -9.81 7.11 99.48 0.71 -9.11 16 7 C -1.04 -58.52 9.75 67.73 0.66 -57.86 16 8 H 0.12 5.99 7.81 -2.91 -0.02 5.96 16 9 S 2.72 150.28 5.06 -56.49 -0.29 149.99 16 10 O -1.04 -63.61 16.74 -128.00 -2.14 -65.75 16 11 O -1.04 -63.46 16.73 -128.00 -2.14 -65.61 16 12 N -1.01 -41.23 2.67 -505.68 -1.35 -42.58 16 13 C 0.13 4.36 6.53 86.54 0.57 4.93 16 14 C -0.15 -3.77 4.86 -9.49 -0.05 -3.82 16 15 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 16 C -0.14 -3.78 6.91 31.54 0.22 -3.56 16 17 C -0.11 -3.03 4.88 -9.62 -0.05 -3.08 16 18 H 0.11 2.57 8.14 -2.39 -0.02 2.55 16 19 C 0.13 4.43 6.54 86.50 0.57 5.00 16 20 C 0.10 2.04 4.46 45.60 0.20 2.24 16 21 N -0.82 -13.25 9.65 -165.80 -1.60 -14.85 16 22 H 0.30 16.33 8.31 -92.72 -0.77 15.56 16 23 H 0.07 2.64 7.07 -2.39 -0.02 2.63 16 24 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 25 H 0.03 1.22 7.61 -2.39 -0.02 1.20 16 26 H 0.11 2.22 7.16 -2.39 -0.02 2.21 16 27 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 28 H 0.07 2.80 7.09 -2.39 -0.02 2.78 16 29 H 0.09 2.00 8.08 -2.39 -0.02 1.98 16 30 H 0.36 4.32 9.08 -89.69 -0.81 3.50 16 31 H 0.35 4.90 7.59 -89.70 -0.68 4.21 16 Total: -1.00 -76.47 266.66 -2.96 -79.43 By element: Atomic # 1 Polarization: 22.04 SS G_CDS: -0.33 Total: 21.70 kcal Atomic # 6 Polarization: -54.42 SS G_CDS: 2.58 Total: -51.84 kcal Atomic # 7 Polarization: -108.96 SS G_CDS: -2.67 Total: -111.62 kcal Atomic # 8 Polarization: -127.08 SS G_CDS: -4.28 Total: -131.36 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 2.03 Total: 43.70 kcal Atomic # 16 Polarization: 150.28 SS G_CDS: -0.29 Total: 149.99 kcal Total: -76.47 -2.96 -79.43 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307672919.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.720 kcal (2) G-P(sol) polarization free energy of solvation -76.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds