Wall clock time and date at job start Mon Mar 30 2020 03:34:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.76199 * 102.99833 * 2 1 4 4 N 1.31093 * 126.00513 * 0.02562 * 3 2 1 5 5 N 1.40096 * 108.01092 * 179.97438 * 4 3 2 6 6 C 1.31088 * 108.00948 * 0.02562 * 5 4 3 7 7 S 1.76199 * 126.00034 * 180.02562 * 6 5 4 8 8 C 1.81399 * 103.00061 * 359.97051 * 7 6 5 9 9 C 1.50701 * 109.47149 * 180.02562 * 8 7 6 10 10 H 1.08006 * 119.99718 * 359.97438 * 9 8 7 11 11 C 1.37877 * 120.00348 * 180.02562 * 9 8 7 12 12 N 1.31517 * 119.99417 * 359.97438 * 11 9 8 13 13 Si 1.86793 * 120.00142 * 179.97438 * 11 9 8 14 14 H 1.48508 * 109.47418 * 90.00006 * 13 11 9 15 15 H 1.48503 * 109.47166 * 209.99538 * 13 11 9 16 16 H 1.48496 * 109.47394 * 329.99819 * 13 11 9 17 17 N 1.36691 * 107.99506 * 359.72968 * 6 5 4 18 18 N 1.36607 * 126.00499 * 180.26396 * 17 6 5 19 19 H 1.09002 * 109.47357 * 59.99957 * 1 2 3 20 20 H 1.09003 * 109.46820 * 180.02562 * 1 2 3 21 21 H 1.08998 * 109.46983 * 299.99465 * 1 2 3 22 22 H 1.09002 * 109.47059 * 300.00005 * 8 7 6 23 23 H 1.08991 * 109.47348 * 60.00069 * 8 7 6 24 24 H 0.96999 * 119.99804 * 180.02562 * 12 11 9 25 25 H 1.00902 * 110.99598 * 270.21969 * 18 17 6 26 26 H 1.00897 * 110.99984 * 34.17001 * 18 17 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 7 1.3503 2.7063 0.0005 5 7 2.0717 3.9072 0.0009 6 6 3.3491 3.6127 0.0001 7 16 4.6785 4.7691 0.0008 8 6 3.8264 6.3705 0.0019 9 6 4.8448 7.4813 0.0020 10 1 5.8992 7.2473 0.0018 11 6 4.4306 8.7964 0.0033 12 7 3.1466 9.0813 0.0040 13 14 5.6929 10.1733 0.0041 14 1 6.0270 10.5395 -1.3958 15 1 5.1338 11.3570 0.7053 16 1 6.9213 9.7182 0.7033 17 7 3.4685 2.2510 0.0053 18 7 4.6395 1.5476 0.0114 19 1 -0.3634 0.5138 -0.8900 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5137 0.8900 22 1 3.2021 6.4505 -0.8880 23 1 3.2023 6.4493 0.8919 24 1 2.8551 10.0065 0.0045 25 1 4.9542 1.3612 -0.9290 26 1 5.3492 2.0314 0.5409 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308182196.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:50 Heat of formation + Delta-G solvation = 71.357351 kcal Electronic energy + Delta-G solvation = -13049.126794 eV Core-core repulsion = 10609.531502 eV Total energy + Delta-G solvation = -2439.595292 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 246.030 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -43.04177 -37.00031 -35.37786 -32.46519 -30.81021 -30.18134 -29.70142 -25.46179 -24.18998 -23.60505 -20.16859 -18.83521 -18.46734 -17.95545 -17.40529 -16.66305 -15.97580 -15.50571 -15.09507 -14.67803 -14.45690 -14.39273 -13.69113 -13.15969 -12.95950 -12.77962 -12.68697 -12.34583 -12.04612 -11.89498 -11.71339 -11.54449 -11.34936 -10.79688 -10.65055 -9.23320 -8.58101 -8.37521 -6.56375 -0.35930 0.06592 0.45332 1.03364 1.14248 1.28656 1.33433 1.42445 1.43816 1.56651 2.34138 2.97686 3.35842 3.75065 4.24003 4.27458 4.34510 4.57359 4.78051 4.91081 4.92039 5.47059 5.55560 5.70962 6.22593 6.52460 6.59532 7.14043 8.74692 Molecular weight = 246.03amu Principal moments of inertia in cm(-1) A = 0.058907 B = 0.004919 C = 0.004558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 475.210909 B = 5690.538856 C = 6141.434884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 S 0.055 5.945 3 C 0.220 3.780 4 N -0.354 5.354 5 N -0.353 5.353 6 C 0.178 3.822 7 S -0.001 6.001 8 C 0.083 3.917 9 C -0.545 4.545 10 H 0.080 0.920 11 C 0.016 3.984 12 N -0.923 5.923 13 Si 0.986 3.014 14 H -0.267 1.267 15 H -0.279 1.279 16 H -0.256 1.256 17 N -0.318 5.318 18 N -0.573 5.573 19 H 0.086 0.914 20 H 0.154 0.846 21 H 0.085 0.915 22 H 0.020 0.980 23 H 0.020 0.980 24 H 0.272 0.728 25 H 0.377 0.623 26 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.156 -18.477 -0.738 18.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.317 4.317 2 S 0.279 5.721 3 C -0.162 4.162 4 N -0.190 5.190 5 N -0.189 5.189 6 C -0.206 4.206 7 S 0.227 5.773 8 C -0.065 4.065 9 C -0.584 4.584 10 H 0.098 0.902 11 C -0.186 4.186 12 N -0.560 5.560 13 Si 0.808 3.192 14 H -0.192 1.192 15 H -0.204 1.204 16 H -0.180 1.180 17 N -0.108 5.108 18 N -0.206 5.206 19 H 0.105 0.895 20 H 0.172 0.828 21 H 0.104 0.896 22 H 0.038 0.962 23 H 0.038 0.962 24 H 0.081 0.919 25 H 0.196 0.804 26 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 1.985 -19.175 -0.369 19.281 hybrid contribution -0.374 2.465 -0.458 2.534 sum 1.611 -16.710 -0.827 16.808 Atomic orbital electron populations 1.23880 0.91863 1.09108 1.06867 1.85239 1.08667 0.86381 1.91792 1.27277 0.82493 1.03721 1.02696 1.78063 1.22430 0.93730 1.24801 1.78240 1.00842 1.16230 1.23575 1.27871 1.00676 0.88242 1.03820 1.84660 1.02790 0.98317 1.91565 1.21022 0.97838 0.88277 0.99398 1.20913 0.92972 0.89895 1.54631 0.90165 1.26034 0.97897 1.01364 0.93301 1.70123 1.16393 1.20709 1.48796 0.85138 0.78245 0.76907 0.78915 1.19229 1.20436 1.17991 1.45079 1.04648 1.00542 1.60525 1.59859 0.98161 1.39944 1.22678 0.89515 0.82838 0.89615 0.96172 0.96195 0.91865 0.80421 0.79518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.39 10.39 113.37 1.18 -1.21 15 2 S 0.05 1.17 22.70 -56.49 -1.28 -0.11 15 3 C 0.22 7.35 8.22 179.56 1.48 8.83 15 4 N -0.35 -14.69 12.29 -56.86 -0.70 -15.39 15 5 N -0.35 -16.96 12.29 -56.86 -0.70 -17.65 15 6 C 0.18 7.36 8.16 179.56 1.47 8.83 15 7 S 0.00 -0.05 21.59 -56.49 -1.22 -1.27 15 8 C 0.08 4.48 5.33 71.24 0.38 4.86 15 9 C -0.54 -29.78 9.13 25.60 0.23 -29.55 15 10 H 0.08 4.10 7.71 -2.91 -0.02 4.08 15 11 C 0.02 0.89 5.46 84.65 0.46 1.35 15 12 N -0.92 -54.84 13.29 21.45 0.28 -54.56 15 13 Si 0.99 42.03 29.54 68.60 2.03 44.06 15 14 H -0.27 -10.96 7.11 99.48 0.71 -10.25 15 15 H -0.28 -11.67 7.11 99.48 0.71 -10.96 15 16 H -0.26 -10.27 7.11 99.48 0.71 -9.57 15 17 N -0.32 -10.46 3.75 -194.27 -0.73 -11.19 15 18 N -0.57 -12.89 10.28 37.02 0.38 -12.51 15 19 H 0.09 1.55 8.14 -2.39 -0.02 1.53 15 20 H 0.15 1.24 8.14 -2.39 -0.02 1.22 15 21 H 0.08 1.56 8.14 -2.39 -0.02 1.54 15 22 H 0.02 1.19 8.14 -2.39 -0.02 1.17 15 23 H 0.02 1.17 8.14 -2.39 -0.02 1.16 15 24 H 0.27 15.06 8.31 -92.71 -0.77 14.29 15 25 H 0.38 6.55 9.21 -210.55 -1.94 4.61 15 26 H 0.39 7.78 8.65 -210.56 -1.82 5.96 15 Total: -1.00 -71.46 268.33 0.73 -70.73 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -2.53 Total: 4.78 kcal Atomic # 6 Polarization: -12.09 SS G_CDS: 5.20 Total: -6.90 kcal Atomic # 7 Polarization: -109.84 SS G_CDS: -1.46 Total: -111.30 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.06 kcal Atomic # 16 Polarization: 1.12 SS G_CDS: -2.50 Total: -1.38 kcal Total: -71.46 0.73 -70.73 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308182196.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.091 kcal (2) G-P(sol) polarization free energy of solvation -71.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.734 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds