Wall clock time and date at job start Mon Mar 30 2020 03:50:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.39698 * 120.00129 * 334.30787 * 3 2 1 5 5 C 1.37696 * 119.99860 * 180.21381 * 4 3 2 6 6 C 1.39700 * 119.99951 * 359.51386 * 5 4 3 7 7 C 1.47797 * 119.99916 * 180.25596 * 6 5 4 8 8 O 1.21458 * 120.00161 * 180.02562 * 7 6 5 9 9 O 1.34714 * 119.99758 * 0.02562 * 7 6 5 10 10 C 1.39654 * 120.00206 * 0.23999 * 6 5 4 11 11 C 1.50696 * 119.99902 * 180.02562 * 10 6 5 12 12 H 1.08999 * 109.47019 * 40.00183 * 11 10 6 13 13 N 1.46905 * 109.47127 * 159.99805 * 11 10 6 14 14 C 1.50694 * 109.47115 * 279.99682 * 11 10 6 15 15 H 1.08003 * 120.00290 * 0.02562 * 14 11 10 16 16 C 1.37881 * 120.00022 * 180.02562 * 14 11 10 17 17 N 1.31516 * 119.99704 * 0.02562 * 16 14 11 18 18 Si 1.86803 * 120.00302 * 179.97438 * 16 14 11 19 19 H 1.48499 * 109.46637 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.46749 * 119.99758 * 18 16 14 21 21 H 1.48492 * 109.47206 * 240.00379 * 18 16 14 22 22 C 1.37736 * 119.99930 * 359.97438 * 10 6 5 23 23 H 1.08004 * 120.00283 * 0.02562 * 4 3 2 24 24 H 1.08002 * 120.00262 * 179.79921 * 5 4 3 25 25 H 0.96704 * 116.99350 * 179.97438 * 9 7 6 26 26 H 1.00904 * 110.99988 * 296.05099 * 13 11 10 27 27 H 1.00904 * 110.99705 * 59.99567 * 13 11 10 28 28 H 0.97008 * 119.99663 * 179.97438 * 17 16 14 29 29 H 1.08001 * 120.00337 * 180.02562 * 22 10 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2670 -1.0892 0.5245 5 6 4.6440 -1.0866 0.5285 6 6 5.3419 0.0014 -0.0012 7 6 6.8199 0.0017 -0.0021 8 8 7.4268 0.9478 -0.4622 9 8 7.4939 -1.0475 0.5075 10 6 4.6432 1.0887 -0.5302 11 6 5.3962 2.2621 -1.1021 12 1 6.2592 1.9020 -1.6621 13 7 4.5132 3.0210 -1.9980 14 6 5.8616 3.1550 0.0191 15 1 5.6352 2.8982 1.0434 16 6 6.5765 4.2998 -0.2628 17 7 6.8518 4.6127 -1.5102 18 14 7.1529 5.4070 1.1269 19 1 6.7173 4.8368 2.4271 20 1 8.6346 5.5035 1.1008 21 1 6.5656 6.7603 0.9577 22 6 3.2658 1.0881 -0.5302 23 1 2.7274 -1.9326 0.9296 24 1 5.1844 -1.9278 0.9369 25 1 8.4596 -1.0019 0.4844 26 1 4.2390 2.4634 -2.7930 27 1 3.7048 3.3657 -1.5022 28 1 7.3545 5.4183 -1.7085 29 1 2.7254 1.9287 -0.9397 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309179690.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:12 Heat of formation + Delta-G solvation = -19.437308 kcal Electronic energy + Delta-G solvation = -17196.209111 eV Core-core repulsion = 14278.020188 eV Total energy + Delta-G solvation = -2918.188923 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.18314 -38.63993 -36.49159 -35.63589 -34.49355 -31.75088 -31.51493 -29.52869 -26.15959 -25.14581 -23.24974 -21.32217 -20.62813 -18.10363 -17.67301 -16.81022 -16.49517 -15.24882 -14.99622 -14.64973 -14.16306 -14.10797 -13.88894 -13.87669 -13.31372 -12.80485 -12.77558 -12.33472 -12.06915 -11.94464 -11.40845 -11.14226 -10.97438 -10.81424 -10.60279 -10.00784 -9.54633 -9.22815 -8.84721 -8.44053 -8.23308 -7.20713 -5.83146 -3.94673 0.56308 1.56256 2.63789 2.67615 3.35083 3.37394 3.43264 3.44282 3.45686 3.91425 4.09754 4.53074 4.96421 4.98311 5.34457 5.43023 5.51945 5.71634 5.86648 6.10709 6.22932 6.30927 6.46163 6.65028 6.91057 6.97422 7.47231 7.54094 7.90130 8.20941 8.46429 8.58853 8.92766 9.13986 9.70341 11.22162 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.019753 B = 0.008746 C = 0.006930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.150011 B = 3200.555166 C = 4039.674047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C 0.262 3.738 3 C -0.003 4.003 4 C -0.113 4.113 5 C -0.068 4.068 6 C -0.095 4.095 7 C 0.497 3.503 8 O -0.441 6.441 9 O -0.529 6.529 10 C -0.016 4.016 11 C 0.243 3.757 12 H 0.089 0.911 13 N -0.812 5.812 14 C -0.509 4.509 15 H 0.049 0.951 16 C 0.089 3.911 17 N -0.842 5.842 18 Si 0.882 3.118 19 H -0.276 1.276 20 H -0.285 1.285 21 H -0.285 1.285 22 C -0.094 4.094 23 H 0.131 0.869 24 H 0.140 0.860 25 H 0.408 0.592 26 H 0.299 0.701 27 H 0.316 0.684 28 H 0.254 0.746 29 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.813 -11.566 2.757 12.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.101 5.101 2 C -0.053 4.053 3 C -0.006 4.006 4 C -0.134 4.134 5 C -0.086 4.086 6 C -0.097 4.097 7 C 0.338 3.662 8 O -0.325 6.325 9 O -0.342 6.342 10 C -0.019 4.019 11 C 0.133 3.867 12 H 0.106 0.894 13 N -0.339 5.339 14 C -0.548 4.548 15 H 0.067 0.933 16 C -0.118 4.118 17 N -0.477 5.477 18 Si 0.710 3.290 19 H -0.200 1.200 20 H -0.212 1.212 21 H -0.211 1.211 22 C -0.115 4.115 23 H 0.149 0.851 24 H 0.158 0.842 25 H 0.265 0.735 26 H 0.110 0.890 27 H 0.129 0.871 28 H 0.064 0.936 29 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -3.116 -10.636 2.386 11.337 hybrid contribution 0.643 -0.058 1.116 1.290 sum -2.473 -10.694 3.502 11.521 Atomic orbital electron populations 1.81208 1.12100 1.08039 1.08742 1.25810 0.92746 0.93336 0.93458 1.16194 0.84029 0.97107 1.03266 1.20893 0.93960 0.97468 1.01075 1.21312 0.93436 0.97560 0.96283 1.19125 0.89688 0.96356 1.04575 1.20877 0.88825 0.79888 0.76610 1.91105 1.69354 1.32597 1.39405 1.84509 1.26221 1.45928 1.77577 1.22108 0.93261 0.96002 0.90532 1.18826 0.90830 0.84619 0.92389 0.89387 1.59221 1.21567 1.42490 1.10667 1.20498 1.36558 1.07088 0.90630 0.93317 1.24825 0.94914 0.97273 0.94781 1.70100 1.36668 1.23936 1.17007 0.86738 0.78480 0.80896 0.82925 1.20043 1.21158 1.21128 1.21032 0.93831 0.97046 0.99595 0.85060 0.84177 0.73475 0.88980 0.87065 0.93625 0.84589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -6.73 18.54 41.84 0.78 -5.95 15 2 C 0.26 3.74 15.32 -22.47 -0.34 3.39 15 3 C 0.00 -0.03 5.73 -106.89 -0.61 -0.65 15 4 C -0.11 -1.36 9.73 -39.23 -0.38 -1.75 15 5 C -0.07 -0.88 9.60 -39.23 -0.38 -1.25 15 6 C -0.09 -1.59 5.87 -104.91 -0.62 -2.21 15 7 C 0.50 8.73 8.21 34.64 0.28 9.01 15 8 O -0.44 -9.72 13.08 -19.23 -0.25 -9.97 15 9 O -0.53 -6.86 12.67 -40.53 -0.51 -7.37 15 10 C -0.02 -0.29 5.04 -104.28 -0.53 -0.82 15 11 C 0.24 5.60 2.13 -70.02 -0.15 5.45 15 12 H 0.09 2.32 5.91 -51.93 -0.31 2.01 15 13 N -0.81 -17.75 8.01 -6.65 -0.05 -17.80 15 14 C -0.51 -13.37 7.40 -34.44 -0.25 -13.62 15 15 H 0.05 1.30 7.74 -52.48 -0.41 0.89 15 16 C 0.09 2.44 5.39 -17.82 -0.10 2.34 15 17 N -0.84 -24.18 12.77 55.43 0.71 -23.48 15 18 Si 0.88 21.28 29.54 -169.99 -5.02 16.25 15 19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 15 20 H -0.29 -6.91 7.11 56.52 0.40 -6.51 15 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 15 22 C -0.09 -1.50 8.94 -39.23 -0.35 -1.85 15 23 H 0.13 1.20 8.06 -52.48 -0.42 0.78 15 24 H 0.14 1.48 7.60 -52.49 -0.40 1.08 15 25 H 0.41 3.59 9.11 45.56 0.42 4.00 15 26 H 0.30 5.74 9.06 -39.29 -0.36 5.38 15 27 H 0.32 6.47 7.28 -39.29 -0.29 6.19 15 28 H 0.25 7.01 8.31 -40.82 -0.34 6.67 15 29 H 0.14 2.08 6.24 -52.49 -0.33 1.76 15 LS Contribution 268.57 15.07 4.05 4.05 Total: -1.00 -31.64 268.57 -4.96 -36.60 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -1.22 Total: 9.62 kcal Atomic # 6 Polarization: 1.47 SS G_CDS: -3.42 Total: -1.95 kcal Atomic # 7 Polarization: -48.66 SS G_CDS: 1.43 Total: -47.23 kcal Atomic # 8 Polarization: -16.57 SS G_CDS: -0.76 Total: -17.34 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -31.64 -4.96 -36.60 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309179690.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.162 kcal (2) G-P(sol) polarization free energy of solvation -31.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds