Wall clock time and date at job start Mon Mar 30 2020 03:50:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.39698 * 120.00129 * 334.30787 * 3 2 1 5 5 C 1.37696 * 119.99860 * 180.21381 * 4 3 2 6 6 C 1.39700 * 119.99951 * 359.51386 * 5 4 3 7 7 C 1.47797 * 119.99916 * 180.25596 * 6 5 4 8 8 O 1.21458 * 120.00161 * 180.02562 * 7 6 5 9 9 O 1.34714 * 119.99758 * 0.02562 * 7 6 5 10 10 C 1.39654 * 120.00206 * 0.23999 * 6 5 4 11 11 C 1.50696 * 119.99902 * 180.02562 * 10 6 5 12 12 H 1.08999 * 109.47019 * 40.00183 * 11 10 6 13 13 N 1.46905 * 109.47127 * 159.99805 * 11 10 6 14 14 C 1.50694 * 109.47115 * 279.99682 * 11 10 6 15 15 H 1.08003 * 120.00290 * 0.02562 * 14 11 10 16 16 C 1.37881 * 120.00022 * 180.02562 * 14 11 10 17 17 N 1.31516 * 119.99704 * 0.02562 * 16 14 11 18 18 Si 1.86803 * 120.00302 * 179.97438 * 16 14 11 19 19 H 1.48499 * 109.46637 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.46749 * 119.99758 * 18 16 14 21 21 H 1.48492 * 109.47206 * 240.00379 * 18 16 14 22 22 C 1.37736 * 119.99930 * 359.97438 * 10 6 5 23 23 H 1.08004 * 120.00283 * 0.02562 * 4 3 2 24 24 H 1.08002 * 120.00262 * 179.79921 * 5 4 3 25 25 H 0.96704 * 116.99350 * 179.97438 * 9 7 6 26 26 H 1.00904 * 110.99988 * 296.05099 * 13 11 10 27 27 H 1.00904 * 110.99705 * 59.99567 * 13 11 10 28 28 H 0.97008 * 119.99663 * 179.97438 * 17 16 14 29 29 H 1.08001 * 120.00337 * 180.02562 * 22 10 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2670 -1.0892 0.5245 5 6 4.6440 -1.0866 0.5285 6 6 5.3419 0.0014 -0.0012 7 6 6.8199 0.0017 -0.0021 8 8 7.4268 0.9478 -0.4622 9 8 7.4939 -1.0475 0.5075 10 6 4.6432 1.0887 -0.5302 11 6 5.3962 2.2621 -1.1021 12 1 6.2592 1.9020 -1.6621 13 7 4.5132 3.0210 -1.9980 14 6 5.8616 3.1550 0.0191 15 1 5.6352 2.8982 1.0434 16 6 6.5765 4.2998 -0.2628 17 7 6.8518 4.6127 -1.5102 18 14 7.1529 5.4070 1.1269 19 1 6.7173 4.8368 2.4271 20 1 8.6346 5.5035 1.1008 21 1 6.5656 6.7603 0.9577 22 6 3.2658 1.0881 -0.5302 23 1 2.7274 -1.9326 0.9296 24 1 5.1844 -1.9278 0.9369 25 1 8.4596 -1.0019 0.4844 26 1 4.2390 2.4634 -2.7930 27 1 3.7048 3.3657 -1.5022 28 1 7.3545 5.4183 -1.7085 29 1 2.7254 1.9287 -0.9397 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309179690.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:12 Heat of formation + Delta-G solvation = -42.885524 kcal Electronic energy + Delta-G solvation = -17197.225901 eV Core-core repulsion = 14278.020188 eV Total energy + Delta-G solvation = -2919.205713 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.48368 -39.89350 -37.74104 -36.94479 -36.07348 -33.64189 -32.73603 -30.92381 -28.03725 -26.41463 -24.80661 -22.57008 -22.04624 -19.39106 -18.91492 -18.49156 -18.02858 -16.65321 -16.42782 -16.34766 -15.82692 -15.35659 -15.13114 -15.06950 -14.63613 -14.32931 -14.03154 -13.89028 -13.43057 -13.19149 -13.09024 -12.76904 -12.65481 -12.26911 -12.23661 -11.77094 -11.29626 -10.85560 -10.41872 -10.03276 -9.68275 -8.88386 -7.87990 -6.02987 -0.64202 0.40614 1.38505 1.42581 1.44844 1.52870 1.53481 2.15181 2.25402 2.51688 2.75057 2.91848 3.38234 3.84737 3.91323 4.21443 4.25619 4.47539 4.62200 4.72936 4.99276 5.16083 5.21816 5.35490 5.68620 5.74724 5.80936 5.91086 6.30227 6.34798 6.75095 7.16097 7.28144 7.34126 7.64483 9.16879 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.019753 B = 0.008746 C = 0.006930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.150011 B = 3200.555166 C = 4039.674047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C 0.281 3.719 3 C 0.005 3.995 4 C -0.086 4.086 5 C -0.050 4.050 6 C -0.111 4.111 7 C 0.502 3.498 8 O -0.499 6.499 9 O -0.508 6.508 10 C -0.043 4.043 11 C 0.249 3.751 12 H 0.050 0.950 13 N -0.826 5.826 14 C -0.506 4.506 15 H 0.038 0.962 16 C 0.038 3.962 17 N -0.879 5.879 18 Si 0.935 3.065 19 H -0.271 1.271 20 H -0.288 1.288 21 H -0.283 1.283 22 C -0.096 4.096 23 H 0.175 0.825 24 H 0.175 0.825 25 H 0.427 0.573 26 H 0.314 0.686 27 H 0.322 0.678 28 H 0.250 0.750 29 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.908 -13.961 4.367 14.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.125 5.125 2 C -0.034 4.034 3 C 0.002 3.998 4 C -0.106 4.106 5 C -0.068 4.068 6 C -0.114 4.114 7 C 0.346 3.654 8 O -0.387 6.387 9 O -0.323 6.323 10 C -0.046 4.046 11 C 0.140 3.860 12 H 0.067 0.933 13 N -0.355 5.355 14 C -0.545 4.545 15 H 0.056 0.944 16 C -0.165 4.165 17 N -0.516 5.516 18 Si 0.762 3.238 19 H -0.195 1.195 20 H -0.214 1.214 21 H -0.209 1.209 22 C -0.117 4.117 23 H 0.193 0.807 24 H 0.192 0.808 25 H 0.288 0.712 26 H 0.125 0.875 27 H 0.136 0.864 28 H 0.059 0.941 29 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -4.210 -13.069 4.025 14.308 hybrid contribution 0.947 0.486 0.661 1.253 sum -3.263 -12.582 4.686 13.817 Atomic orbital electron populations 1.81249 1.12824 1.08825 1.09554 1.25673 0.92459 0.92568 0.92679 1.16158 0.83678 0.97019 1.02960 1.21374 0.93583 0.97425 0.98191 1.21619 0.93820 0.96808 0.94550 1.19284 0.89494 0.97279 1.05327 1.21144 0.89440 0.79634 0.75208 1.91105 1.70502 1.34954 1.42114 1.84445 1.27943 1.43671 1.76198 1.21566 0.94135 0.95707 0.93226 1.18277 0.90568 0.85847 0.91344 0.93300 1.58990 1.21832 1.43350 1.11333 1.20761 1.35301 1.07333 0.91109 0.94360 1.25493 0.95586 0.98883 0.96506 1.70227 1.38357 1.24410 1.18629 0.85896 0.77707 0.79388 0.80805 1.19503 1.21435 1.20901 1.20914 0.92784 0.97980 1.00035 0.80724 0.80753 0.71213 0.87464 0.86398 0.94133 0.84779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -13.06 18.54 19.00 0.35 -12.71 15 2 C 0.28 7.16 15.32 88.33 1.35 8.52 15 3 C 0.01 0.13 5.73 -21.34 -0.12 0.01 15 4 C -0.09 -1.61 9.73 22.49 0.22 -1.39 15 5 C -0.05 -1.08 9.60 22.50 0.22 -0.86 15 6 C -0.11 -3.55 5.87 -20.05 -0.12 -3.67 15 7 C 0.50 17.32 8.21 70.35 0.58 17.89 15 8 O -0.50 -22.71 13.08 19.97 0.26 -22.45 15 9 O -0.51 -11.92 12.67 -56.24 -0.71 -12.63 15 10 C -0.04 -1.60 5.04 -19.64 -0.10 -1.70 15 11 C 0.25 11.87 2.13 43.42 0.09 11.96 15 12 H 0.05 2.73 5.91 -2.39 -0.01 2.72 15 13 N -0.83 -37.19 8.01 -174.96 -1.40 -38.59 15 14 C -0.51 -27.29 7.40 25.60 0.19 -27.10 15 15 H 0.04 2.08 7.74 -2.91 -0.02 2.06 15 16 C 0.04 2.14 5.39 84.66 0.46 2.60 15 17 N -0.88 -52.34 12.77 21.45 0.27 -52.07 15 18 Si 0.93 44.68 29.54 68.60 2.03 46.70 15 19 H -0.27 -12.52 7.11 99.48 0.71 -11.81 15 20 H -0.29 -13.74 7.11 99.48 0.71 -13.04 15 21 H -0.28 -13.29 7.11 99.48 0.71 -12.58 15 22 C -0.10 -2.94 8.94 22.50 0.20 -2.74 15 23 H 0.18 1.93 8.06 -2.91 -0.02 1.91 15 24 H 0.18 2.62 7.60 -2.91 -0.02 2.60 15 25 H 0.43 6.62 9.11 -74.05 -0.67 5.94 15 26 H 0.31 12.37 9.06 -89.69 -0.81 11.56 15 27 H 0.32 13.51 7.28 -89.69 -0.65 12.86 15 28 H 0.25 14.33 8.31 -92.70 -0.77 13.56 15 29 H 0.13 4.05 6.24 -2.91 -0.02 4.03 15 Total: -1.00 -71.31 268.57 2.88 -68.44 By element: Atomic # 1 Polarization: 20.69 SS G_CDS: -0.89 Total: 19.80 kcal Atomic # 6 Polarization: 0.55 SS G_CDS: 2.97 Total: 3.52 kcal Atomic # 7 Polarization: -102.60 SS G_CDS: -0.78 Total: -103.37 kcal Atomic # 8 Polarization: -34.63 SS G_CDS: -0.45 Total: -35.08 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.70 kcal Total: -71.31 2.88 -68.44 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309179690.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.553 kcal (2) G-P(sol) polarization free energy of solvation -71.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds