Wall clock time and date at job start Mon Mar 30 2020 03:50:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39698 * 120.00192 * 332.32977 * 3 2 1 5 5 C 1.37691 * 120.00198 * 180.29529 * 4 3 2 6 6 C 1.39706 * 119.99834 * 359.73103 * 5 4 3 7 7 C 1.47791 * 119.99935 * 179.97438 * 6 5 4 8 8 O 1.21460 * 119.99755 * 179.97438 * 7 6 5 9 9 O 1.34715 * 119.99995 * 359.97438 * 7 6 5 10 10 C 1.39650 * 119.99755 * 359.97438 * 6 5 4 11 11 C 1.37733 * 120.00476 * 0.02562 * 10 6 5 12 12 C 1.50701 * 120.00528 * 180.02562 * 11 10 6 13 13 H 1.08999 * 109.47538 * 220.00404 * 12 11 10 14 14 N 1.46903 * 109.47043 * 340.00453 * 12 11 10 15 15 C 1.50703 * 109.46787 * 100.00029 * 12 11 10 16 16 H 1.07998 * 120.00237 * 356.30276 * 15 12 11 17 17 C 1.37878 * 119.99677 * 176.30483 * 15 12 11 18 18 N 1.31520 * 120.00287 * 353.15365 * 17 15 12 19 19 Si 1.86799 * 120.00006 * 173.15316 * 17 15 12 20 20 H 1.48502 * 109.47127 * 265.18763 * 19 17 15 21 21 H 1.48499 * 109.46974 * 25.18356 * 19 17 15 22 22 H 1.48497 * 109.47229 * 145.18391 * 19 17 15 23 23 H 1.08000 * 119.99860 * 0.03241 * 4 3 2 24 24 H 1.07996 * 120.00679 * 179.74863 * 5 4 3 25 25 H 0.96705 * 116.99495 * 180.02562 * 9 7 6 26 26 H 1.08000 * 120.00008 * 179.97438 * 10 6 5 27 27 H 1.00902 * 110.99910 * 66.75530 * 14 12 11 28 28 H 1.00891 * 111.00156 * 190.71315 * 14 12 11 29 29 H 0.97002 * 119.99807 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2670 -1.0705 0.5618 5 6 4.6439 -1.0670 0.5673 6 6 5.3419 0.0051 0.0059 7 6 6.8198 0.0091 0.0122 8 8 7.4266 0.9410 -0.4762 9 8 7.4938 -1.0208 0.5598 10 6 4.6431 1.0729 -0.5612 11 6 3.2658 1.0695 -0.5667 12 6 2.5117 2.2215 -1.1792 13 1 1.6453 2.4581 -0.5616 14 7 3.3913 3.3954 -1.2589 15 6 2.0533 1.8424 -2.5638 16 1 2.3355 0.8882 -2.9837 17 6 1.2737 2.7137 -3.2946 18 7 0.8179 3.8142 -2.7370 19 14 0.8647 2.3311 -5.0766 20 1 1.8405 3.0114 -5.9655 21 1 0.9340 0.8641 -5.2964 22 1 -0.5056 2.8135 -5.3846 23 1 2.7274 -1.8993 0.9957 24 1 5.1843 -1.8931 1.0052 25 1 8.4595 -0.9732 0.5406 26 1 5.1827 1.9019 -0.9948 27 1 4.1439 3.2396 -1.9128 28 1 2.8682 4.2236 -1.5005 29 1 0.2697 4.4273 -3.2512 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309180421.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:44 Heat of formation + Delta-G solvation = -41.767484 kcal Electronic energy + Delta-G solvation = -16883.614979 eV Core-core repulsion = 13964.457747 eV Total energy + Delta-G solvation = -2919.157232 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.32127 -38.90829 -36.06523 -35.74449 -34.91948 -31.91489 -31.35953 -29.64074 -26.20366 -25.24607 -23.43756 -21.49908 -20.43234 -18.50598 -17.77652 -16.99062 -16.68045 -15.53584 -15.43550 -14.74776 -14.10437 -14.05670 -13.88579 -13.52524 -12.99510 -12.82408 -12.44738 -12.17061 -12.01083 -11.90973 -11.50894 -11.24099 -11.13275 -11.01604 -10.72898 -10.54126 -10.16648 -9.80446 -8.81911 -8.76100 -8.33342 -7.45040 -6.24157 -4.38086 0.60559 1.67093 2.49536 3.05032 3.17464 3.25978 3.29267 3.30020 3.53020 4.21067 4.33273 4.40803 4.95793 5.00492 5.13322 5.34402 5.46272 5.73509 5.96906 6.15889 6.34362 6.35000 6.48289 6.61112 6.76985 7.04268 7.35520 7.62087 7.87911 7.93625 8.09036 8.49481 8.68344 8.85563 9.32417 10.77387 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.022878 B = 0.007410 C = 0.006330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.580536 B = 3777.851763 C = 4422.228135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C 0.265 3.735 3 C 0.003 3.997 4 C -0.092 4.092 5 C -0.090 4.090 6 C -0.112 4.112 7 C 0.527 3.473 8 O -0.510 6.510 9 O -0.515 6.515 10 C -0.044 4.044 11 C 0.007 3.993 12 C 0.234 3.766 13 H 0.060 0.940 14 N -0.849 5.849 15 C -0.551 4.551 16 H 0.059 0.941 17 C 0.073 3.927 18 N -0.885 5.885 19 Si 0.897 3.103 20 H -0.278 1.278 21 H -0.272 1.272 22 H -0.285 1.285 23 H 0.134 0.866 24 H 0.139 0.861 25 H 0.410 0.590 26 H 0.150 0.850 27 H 0.319 0.681 28 H 0.352 0.648 29 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.189 -8.544 5.898 14.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.090 5.090 2 C -0.051 4.051 3 C -0.001 4.001 4 C -0.112 4.112 5 C -0.108 4.108 6 C -0.114 4.114 7 C 0.372 3.628 8 O -0.398 6.398 9 O -0.326 6.326 10 C -0.062 4.062 11 C 0.003 3.997 12 C 0.124 3.876 13 H 0.078 0.922 14 N -0.377 5.377 15 C -0.590 4.590 16 H 0.077 0.923 17 C -0.132 4.132 18 N -0.522 5.522 19 Si 0.724 3.276 20 H -0.204 1.204 21 H -0.197 1.197 22 H -0.210 1.210 23 H 0.152 0.848 24 H 0.157 0.843 25 H 0.269 0.731 26 H 0.168 0.832 27 H 0.130 0.870 28 H 0.166 0.834 29 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 8.174 -8.264 6.533 13.334 hybrid contribution 0.457 -0.065 -2.134 2.183 sum 8.631 -8.329 4.399 12.776 Atomic orbital electron populations 1.81113 1.12124 1.07550 1.08183 1.25364 0.92499 0.93607 0.93587 1.16157 0.85015 0.96666 1.02250 1.20986 0.93853 0.97198 0.99169 1.21098 0.93501 0.97616 0.98631 1.19205 0.88520 0.98086 1.05597 1.21029 0.88969 0.78916 0.73924 1.90895 1.70201 1.35571 1.43181 1.84570 1.26498 1.46562 1.75021 1.21112 0.93347 0.96455 0.95295 1.20633 0.93009 0.95142 0.90879 1.18086 0.90199 0.84624 0.94692 0.92242 1.59482 1.15047 1.07343 1.55848 1.21620 1.33759 1.04003 0.99663 0.92286 1.24984 0.94297 0.95118 0.98757 1.69861 1.34135 1.11733 1.36467 0.86490 0.77813 0.78865 0.84417 1.20371 1.19707 1.21042 0.84833 0.84340 0.73136 0.83235 0.87039 0.83380 0.92305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -9.01 18.54 41.84 0.78 -8.23 15 2 C 0.26 5.27 13.77 -22.47 -0.31 4.96 15 3 C 0.00 0.05 5.73 -106.90 -0.61 -0.56 15 4 C -0.09 -1.23 9.73 -39.24 -0.38 -1.61 15 5 C -0.09 -1.13 9.60 -39.23 -0.38 -1.50 15 6 C -0.11 -1.65 5.88 -104.92 -0.62 -2.27 15 7 C 0.53 7.22 8.27 34.64 0.29 7.51 15 8 O -0.51 -8.45 17.12 -19.23 -0.33 -8.78 15 9 O -0.51 -4.95 12.67 -40.53 -0.51 -5.46 15 10 C -0.04 -0.76 8.80 -39.24 -0.35 -1.11 15 11 C 0.01 0.13 5.05 -104.28 -0.53 -0.40 15 12 C 0.23 5.43 2.30 -70.01 -0.16 5.27 15 13 H 0.06 1.57 7.45 -51.93 -0.39 1.18 15 14 N -0.85 -18.57 8.46 -6.65 -0.06 -18.62 15 15 C -0.55 -14.07 8.39 -34.44 -0.29 -14.36 15 16 H 0.06 1.53 7.75 -52.49 -0.41 1.12 15 17 C 0.07 1.91 5.36 -17.82 -0.10 1.82 15 18 N -0.88 -23.94 12.16 55.43 0.67 -23.26 15 19 Si 0.90 20.77 29.54 -169.99 -5.02 15.74 15 20 H -0.28 -6.32 7.11 56.52 0.40 -5.92 15 21 H -0.27 -6.33 7.11 56.52 0.40 -5.93 15 22 H -0.28 -6.65 7.11 56.52 0.40 -6.25 15 23 H 0.13 1.40 8.06 -52.49 -0.42 0.98 15 24 H 0.14 1.33 7.60 -52.49 -0.40 0.93 15 25 H 0.41 2.04 9.11 45.56 0.42 2.45 15 26 H 0.15 2.71 5.99 -52.49 -0.31 2.40 15 27 H 0.32 6.65 7.63 -39.29 -0.30 6.35 15 28 H 0.35 8.28 7.83 -39.30 -0.31 7.97 15 29 H 0.27 6.96 8.31 -40.82 -0.34 6.62 15 LS Contribution 272.41 15.07 4.11 4.11 Total: -1.00 -29.80 272.41 -5.05 -34.86 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -1.26 Total: 11.91 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: -3.43 Total: -2.26 kcal Atomic # 7 Polarization: -51.51 SS G_CDS: 1.39 Total: -50.12 kcal Atomic # 8 Polarization: -13.40 SS G_CDS: -0.84 Total: -14.24 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -29.80 -5.05 -34.86 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309180421.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.912 kcal (2) G-P(sol) polarization free energy of solvation -29.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds