Wall clock time and date at job start Mon Mar 30 2020 03:50:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39698 * 120.00192 * 332.32977 * 3 2 1 5 5 C 1.37691 * 120.00198 * 180.29529 * 4 3 2 6 6 C 1.39706 * 119.99834 * 359.73103 * 5 4 3 7 7 C 1.47791 * 119.99935 * 179.97438 * 6 5 4 8 8 O 1.21460 * 119.99755 * 179.97438 * 7 6 5 9 9 O 1.34715 * 119.99995 * 359.97438 * 7 6 5 10 10 C 1.39650 * 119.99755 * 359.97438 * 6 5 4 11 11 C 1.37733 * 120.00476 * 0.02562 * 10 6 5 12 12 C 1.50701 * 120.00528 * 180.02562 * 11 10 6 13 13 H 1.08999 * 109.47538 * 220.00404 * 12 11 10 14 14 N 1.46903 * 109.47043 * 340.00453 * 12 11 10 15 15 C 1.50703 * 109.46787 * 100.00029 * 12 11 10 16 16 H 1.07998 * 120.00237 * 356.30276 * 15 12 11 17 17 C 1.37878 * 119.99677 * 176.30483 * 15 12 11 18 18 N 1.31520 * 120.00287 * 353.15365 * 17 15 12 19 19 Si 1.86799 * 120.00006 * 173.15316 * 17 15 12 20 20 H 1.48502 * 109.47127 * 265.18763 * 19 17 15 21 21 H 1.48499 * 109.46974 * 25.18356 * 19 17 15 22 22 H 1.48497 * 109.47229 * 145.18391 * 19 17 15 23 23 H 1.08000 * 119.99860 * 0.03241 * 4 3 2 24 24 H 1.07996 * 120.00679 * 179.74863 * 5 4 3 25 25 H 0.96705 * 116.99495 * 180.02562 * 9 7 6 26 26 H 1.08000 * 120.00008 * 179.97438 * 10 6 5 27 27 H 1.00902 * 110.99910 * 66.75530 * 14 12 11 28 28 H 1.00891 * 111.00156 * 190.71315 * 14 12 11 29 29 H 0.97002 * 119.99807 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2670 -1.0705 0.5618 5 6 4.6439 -1.0670 0.5673 6 6 5.3419 0.0051 0.0059 7 6 6.8198 0.0091 0.0122 8 8 7.4266 0.9410 -0.4762 9 8 7.4938 -1.0208 0.5598 10 6 4.6431 1.0729 -0.5612 11 6 3.2658 1.0695 -0.5667 12 6 2.5117 2.2215 -1.1792 13 1 1.6453 2.4581 -0.5616 14 7 3.3913 3.3954 -1.2589 15 6 2.0533 1.8424 -2.5638 16 1 2.3355 0.8882 -2.9837 17 6 1.2737 2.7137 -3.2946 18 7 0.8179 3.8142 -2.7370 19 14 0.8647 2.3311 -5.0766 20 1 1.8405 3.0114 -5.9655 21 1 0.9340 0.8641 -5.2964 22 1 -0.5056 2.8135 -5.3846 23 1 2.7274 -1.8993 0.9957 24 1 5.1843 -1.8931 1.0052 25 1 8.4595 -0.9732 0.5406 26 1 5.1827 1.9019 -0.9948 27 1 4.1439 3.2396 -1.9128 28 1 2.8682 4.2236 -1.5005 29 1 0.2697 4.4273 -3.2512 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309180421.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:44 Heat of formation + Delta-G solvation = -63.417183 kcal Electronic energy + Delta-G solvation = -16884.553780 eV Core-core repulsion = 13964.457747 eV Total energy + Delta-G solvation = -2920.096033 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.43843 -40.15449 -37.34873 -36.97716 -36.63687 -33.74142 -32.65880 -31.10518 -28.08101 -26.47744 -25.05020 -22.61253 -21.89268 -19.82668 -18.87292 -18.65802 -18.13309 -16.90264 -16.57321 -16.51693 -15.70336 -15.34485 -15.08717 -15.06412 -14.64551 -14.21398 -13.99942 -13.71356 -13.49638 -13.33442 -12.99584 -12.92941 -12.79506 -12.46838 -12.25516 -12.00726 -11.70912 -11.48703 -10.77196 -10.01737 -9.73730 -9.30051 -8.22036 -6.42957 -0.64703 0.46385 1.29844 1.32343 1.35873 1.44057 1.74640 2.08518 2.17622 2.31879 2.94439 3.00179 3.00889 3.83080 3.91079 4.17833 4.26796 4.49208 4.60335 4.79735 4.95483 5.17169 5.22009 5.35439 5.58140 5.61864 5.68641 5.78018 5.95648 6.54921 6.60086 6.74302 6.99877 7.06048 7.30402 8.76373 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.022878 B = 0.007410 C = 0.006330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.580536 B = 3777.851763 C = 4422.228135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.460 5.460 2 C 0.278 3.722 3 C -0.015 4.015 4 C -0.069 4.069 5 C -0.061 4.061 6 C -0.109 4.109 7 C 0.538 3.462 8 O -0.544 6.544 9 O -0.495 6.495 10 C -0.056 4.056 11 C -0.020 4.020 12 C 0.239 3.761 13 H 0.017 0.983 14 N -0.837 5.837 15 C -0.555 4.555 16 H 0.052 0.948 17 C 0.027 3.973 18 N -0.911 5.911 19 Si 0.951 3.049 20 H -0.269 1.269 21 H -0.272 1.272 22 H -0.288 1.288 23 H 0.174 0.826 24 H 0.185 0.815 25 H 0.435 0.565 26 H 0.135 0.865 27 H 0.325 0.675 28 H 0.340 0.660 29 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.191 -11.178 6.612 17.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.136 5.136 2 C -0.036 4.036 3 C -0.019 4.019 4 C -0.089 4.089 5 C -0.079 4.079 6 C -0.111 4.111 7 C 0.383 3.617 8 O -0.436 6.436 9 O -0.309 6.309 10 C -0.074 4.074 11 C -0.023 4.023 12 C 0.129 3.871 13 H 0.035 0.965 14 N -0.364 5.364 15 C -0.595 4.595 16 H 0.070 0.930 17 C -0.174 4.174 18 N -0.550 5.550 19 Si 0.776 3.224 20 H -0.194 1.194 21 H -0.197 1.197 22 H -0.214 1.214 23 H 0.191 0.809 24 H 0.202 0.798 25 H 0.297 0.703 26 H 0.153 0.847 27 H 0.136 0.864 28 H 0.153 0.847 29 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 10.215 -10.931 7.260 16.630 hybrid contribution -0.028 0.651 -2.260 2.352 sum 10.187 -10.281 5.000 15.312 Atomic orbital electron populations 1.81101 1.13464 1.09089 1.09950 1.25864 0.93100 0.92327 0.92316 1.16356 0.83754 0.97914 1.03876 1.21403 0.94325 0.96293 0.96869 1.21575 0.92982 0.97356 0.95980 1.19342 0.89591 0.97629 1.04561 1.20738 0.88527 0.79047 0.73406 1.90901 1.70757 1.37158 1.44801 1.84489 1.28583 1.44237 1.73559 1.20902 0.92427 0.97508 0.96596 1.20221 0.93783 0.94883 0.93424 1.17807 0.89760 0.86312 0.93242 0.96480 1.59459 1.14644 1.06555 1.55785 1.21875 1.33211 1.03434 1.00970 0.92982 1.25674 0.94541 0.95202 1.02022 1.69963 1.34938 1.12543 1.37549 0.85654 0.77452 0.78521 0.80744 1.19376 1.19687 1.21362 0.80884 0.79800 0.70309 0.84737 0.86385 0.84734 0.92444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -20.43 18.54 19.00 0.35 -20.07 15 2 C 0.28 11.14 13.77 88.33 1.22 12.36 15 3 C -0.02 -0.52 5.73 -21.34 -0.12 -0.64 15 4 C -0.07 -1.56 9.73 22.49 0.22 -1.34 15 5 C -0.06 -1.21 9.60 22.50 0.22 -0.99 15 6 C -0.11 -2.87 5.88 -20.05 -0.12 -2.99 15 7 C 0.54 12.90 8.27 70.35 0.58 13.48 15 8 O -0.54 -17.05 17.12 19.97 0.34 -16.71 15 9 O -0.49 -6.97 12.67 -56.24 -0.71 -7.68 15 10 C -0.06 -1.91 8.80 22.49 0.20 -1.71 15 11 C -0.02 -0.77 5.05 -19.64 -0.10 -0.87 15 12 C 0.24 11.53 2.30 43.42 0.10 11.63 15 13 H 0.02 0.97 7.45 -2.39 -0.02 0.95 15 14 N -0.84 -38.12 8.46 -174.94 -1.48 -39.60 15 15 C -0.56 -29.14 8.39 25.60 0.21 -28.92 15 16 H 0.05 2.74 7.75 -2.91 -0.02 2.72 15 17 C 0.03 1.45 5.36 84.65 0.45 1.90 15 18 N -0.91 -50.96 12.16 21.45 0.26 -50.70 15 19 Si 0.95 43.21 29.54 68.60 2.03 45.23 15 20 H -0.27 -11.71 7.11 99.48 0.71 -11.01 15 21 H -0.27 -12.25 7.11 99.48 0.71 -11.54 15 22 H -0.29 -13.13 7.11 99.48 0.71 -12.42 15 23 H 0.17 2.63 8.06 -2.91 -0.02 2.61 15 24 H 0.18 2.11 7.60 -2.91 -0.02 2.09 15 25 H 0.43 2.16 9.11 -74.05 -0.67 1.48 15 26 H 0.13 4.95 5.99 -2.91 -0.02 4.93 15 27 H 0.33 14.05 7.63 -89.69 -0.68 13.36 15 28 H 0.34 16.76 7.83 -89.70 -0.70 16.06 15 29 H 0.27 14.29 8.31 -92.71 -0.77 13.52 15 Total: -1.00 -67.73 272.41 2.83 -64.89 By element: Atomic # 1 Polarization: 23.57 SS G_CDS: -0.81 Total: 22.75 kcal Atomic # 6 Polarization: -0.97 SS G_CDS: 2.86 Total: 1.89 kcal Atomic # 7 Polarization: -109.51 SS G_CDS: -0.87 Total: -110.38 kcal Atomic # 8 Polarization: -24.02 SS G_CDS: -0.37 Total: -24.40 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.23 kcal Total: -67.73 2.83 -64.89 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309180421.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.476 kcal (2) G-P(sol) polarization free energy of solvation -67.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds