Wall clock time and date at job start Mon Mar 30 2020 03:47:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86796 * 120.00218 * 2 1 4 4 H 1.48495 * 109.47173 * 270.00472 * 3 2 1 5 5 H 1.48505 * 109.47052 * 29.99871 * 3 2 1 6 6 H 1.48496 * 109.47619 * 149.99760 * 3 2 1 7 7 C 1.37879 * 120.00155 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99597 * 359.97438 * 7 2 1 9 9 C 1.50693 * 120.00354 * 179.97438 * 7 2 1 10 10 N 1.46500 * 109.47286 * 179.97438 * 9 7 2 11 11 N 1.40007 * 125.97798 * 269.68628 * 10 9 7 12 12 C 1.30192 * 109.79466 * 180.26425 * 11 10 9 13 13 C 1.41464 * 108.72611 * 0.02562 * 12 11 10 14 14 C 1.40313 * 133.36256 * 180.02562 * 13 12 11 15 15 C 1.35996 * 120.05234 * 180.02562 * 14 13 12 16 16 C 1.40373 * 120.53598 * 359.97231 * 15 14 13 17 17 C 1.47569 * 119.87612 * 180.02562 * 16 15 14 18 18 O 1.21491 * 120.00260 * 180.02562 * 17 16 15 19 19 O 1.34734 * 119.99746 * 0.02562 * 17 16 15 20 20 C 1.39126 * 120.25231 * 0.02660 * 16 15 14 21 21 C 1.37275 * 125.97006 * 90.00296 * 10 9 7 22 22 H 0.96998 * 120.00115 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.47032 * 59.99880 * 9 7 2 24 24 H 1.09004 * 109.47312 * 300.00095 * 9 7 2 25 25 H 1.08002 * 125.63734 * 179.97438 * 12 11 10 26 26 H 1.08001 * 119.97291 * 0.02562 * 14 13 12 27 27 H 1.08001 * 119.73549 * 180.02562 * 15 14 13 28 28 H 0.96695 * 117.00149 * 180.02562 * 19 17 16 29 29 H 1.07995 * 120.19200 * 179.97438 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5115 -1.1941 0.0000 10 7 3.9998 -2.5753 0.0013 11 7 4.2802 -3.3475 1.1350 12 6 4.7003 -4.5255 0.7733 13 6 4.7178 -4.5872 -0.6399 14 6 5.0725 -5.5890 -1.5561 15 6 4.9841 -5.3520 -2.8923 16 6 4.5386 -4.1089 -3.3683 17 6 4.4478 -3.8677 -4.8213 18 8 4.0629 -2.7925 -5.2358 19 8 4.7917 -4.8400 -5.6883 20 6 4.1824 -3.1032 -2.4754 21 6 4.2682 -3.3367 -1.1089 22 1 -0.4850 0.8400 0.0004 23 1 3.8752 -0.6797 0.8895 24 1 3.8745 -0.6809 -0.8905 25 1 4.9887 -5.3233 1.4417 26 1 5.4161 -6.5489 -1.1999 27 1 5.2581 -6.1269 -3.5930 28 1 4.7159 -4.6352 -6.6303 29 1 3.8401 -2.1470 -2.8426 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309494123.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:24 Heat of formation + Delta-G solvation = -0.646361 kcal Electronic energy + Delta-G solvation = -16846.986727 eV Core-core repulsion = 13929.612641 eV Total energy + Delta-G solvation = -2917.374086 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.11730 -39.95755 -36.75313 -36.00140 -33.90920 -32.24683 -30.30388 -29.95287 -27.46403 -24.70040 -23.15146 -21.96036 -21.01665 -20.08516 -18.00335 -17.19695 -17.14596 -16.61314 -15.54810 -15.51093 -14.70888 -14.50867 -14.26490 -13.87408 -13.51389 -13.10395 -12.59657 -12.35643 -12.09650 -11.84843 -11.48757 -11.19794 -10.93111 -10.81422 -10.54280 -10.46435 -10.33970 -9.84278 -9.47224 -8.82115 -8.44477 -7.48067 -6.30282 -4.34772 0.67720 1.65305 2.54624 2.84074 3.06152 3.13620 3.19168 3.20939 3.28511 4.02733 4.18651 4.78335 4.91304 5.04010 5.06375 5.30547 5.36570 5.51198 5.81232 5.84529 6.12948 6.37024 6.40944 6.44527 6.46454 6.59319 6.81954 6.99970 7.21534 7.50702 7.94866 8.12042 8.23506 8.72673 9.24032 10.82118 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.020719 B = 0.007554 C = 0.005960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.082473 B = 3705.921171 C = 4696.534702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.081 3.919 3 Si 0.872 3.128 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.547 4.547 8 H 0.081 0.919 9 C 0.234 3.766 10 N -0.346 5.346 11 N -0.230 5.230 12 C 0.034 3.966 13 C -0.157 4.157 14 C -0.058 4.058 15 C -0.122 4.122 16 C -0.100 4.100 17 C 0.530 3.470 18 O -0.512 6.512 19 O -0.513 6.513 20 C -0.040 4.040 21 C 0.113 3.887 22 H 0.270 0.730 23 H 0.054 0.946 24 H 0.045 0.955 25 H 0.189 0.811 26 H 0.130 0.870 27 H 0.134 0.866 28 H 0.411 0.589 29 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.615 -10.037 -6.289 16.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.124 4.124 3 Si 0.698 3.302 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.188 1.188 7 C -0.586 4.586 8 H 0.099 0.901 9 C 0.115 3.885 10 N -0.132 5.132 11 N -0.046 5.046 12 C -0.158 4.158 13 C -0.166 4.166 14 C -0.078 4.078 15 C -0.142 4.142 16 C -0.105 4.105 17 C 0.374 3.626 18 O -0.401 6.401 19 O -0.324 6.324 20 C -0.062 4.062 21 C -0.006 4.006 22 H 0.080 0.920 23 H 0.072 0.928 24 H 0.063 0.937 25 H 0.205 0.795 26 H 0.148 0.852 27 H 0.152 0.848 28 H 0.269 0.731 29 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 11.019 -8.722 -4.931 14.893 hybrid contribution 0.233 0.602 -1.271 1.426 sum 11.252 -8.120 -6.202 15.199 Atomic orbital electron populations 1.69862 1.06193 1.27543 1.48407 1.24794 0.94845 0.98870 0.93843 0.86909 0.80451 0.83674 0.79190 1.19445 1.20353 1.18770 1.21162 0.87889 0.95630 1.53880 0.90107 1.20059 0.96675 0.72837 0.98910 1.49119 1.51133 1.13057 0.99874 1.76725 1.13584 1.03742 1.10588 1.23785 1.02577 0.96289 0.93183 1.19186 1.08324 0.94974 0.94106 1.20185 0.98302 0.97613 0.91734 1.20633 1.01969 0.95953 0.95606 1.18583 1.07560 0.96052 0.88261 1.20848 0.73174 0.80988 0.87553 1.90916 1.43382 1.25961 1.79876 1.84561 1.80900 1.44947 1.22032 1.20229 0.97231 0.99736 0.89015 1.18653 1.00049 0.92161 0.89765 0.91994 0.92795 0.93727 0.79461 0.85233 0.84797 0.73116 0.83908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.41 13.96 55.43 0.77 -25.64 15 2 C 0.08 2.28 5.47 -17.82 -0.10 2.18 15 3 Si 0.87 20.30 27.47 -169.99 -4.67 15.63 15 4 H -0.27 -6.14 7.11 56.52 0.40 -5.74 15 5 H -0.28 -6.43 7.11 56.52 0.40 -6.02 15 6 H -0.26 -5.80 6.54 56.52 0.37 -5.43 15 7 C -0.55 -15.36 9.94 -34.44 -0.34 -15.71 15 8 H 0.08 2.55 8.06 -52.48 -0.42 2.13 15 9 C 0.23 5.58 5.24 -5.20 -0.03 5.56 15 10 N -0.35 -7.69 3.66 -59.90 -0.22 -7.91 15 11 N -0.23 -4.74 12.44 30.86 0.38 -4.35 15 12 C 0.03 0.55 12.04 -17.02 -0.20 0.34 15 13 C -0.16 -2.61 6.17 -106.87 -0.66 -3.27 15 14 C -0.06 -0.76 10.04 -39.61 -0.40 -1.15 15 15 C -0.12 -1.60 9.53 -39.58 -0.38 -1.98 15 16 C -0.10 -1.58 5.87 -104.96 -0.62 -2.19 15 17 C 0.53 7.83 8.26 34.54 0.29 8.11 15 18 O -0.51 -9.20 17.10 -19.26 -0.33 -9.53 15 19 O -0.51 -5.36 12.65 -40.58 -0.51 -5.87 15 20 C -0.04 -0.75 9.56 -39.01 -0.37 -1.12 15 21 C 0.11 2.24 6.88 -84.17 -0.58 1.66 15 22 H 0.27 7.48 8.31 -40.82 -0.34 7.14 15 23 H 0.05 1.27 7.20 -51.93 -0.37 0.90 15 24 H 0.05 1.01 7.57 -51.93 -0.39 0.61 15 25 H 0.19 2.13 8.06 -52.49 -0.42 1.70 15 26 H 0.13 1.22 8.06 -52.49 -0.42 0.80 15 27 H 0.13 1.40 7.58 -52.49 -0.40 1.01 15 28 H 0.41 2.35 9.11 45.56 0.42 2.77 15 29 H 0.14 2.79 7.62 -52.49 -0.40 2.39 15 LS Contribution 268.58 15.07 4.05 4.05 Total: -1.00 -33.44 268.58 -5.50 -38.94 By element: Atomic # 1 Polarization: 3.83 SS G_CDS: -1.58 Total: 2.25 kcal Atomic # 6 Polarization: -4.18 SS G_CDS: -3.39 Total: -7.57 kcal Atomic # 7 Polarization: -38.84 SS G_CDS: 0.94 Total: -37.90 kcal Atomic # 8 Polarization: -14.56 SS G_CDS: -0.84 Total: -15.40 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -4.67 Total: 15.63 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -33.44 -5.50 -38.94 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309494123.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.298 kcal (2) G-P(sol) polarization free energy of solvation -33.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds