Wall clock time and date at job start Mon Mar 30 2020 03:47:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86796 * 120.00218 * 2 1 4 4 H 1.48495 * 109.47173 * 270.00472 * 3 2 1 5 5 H 1.48505 * 109.47052 * 29.99871 * 3 2 1 6 6 H 1.48496 * 109.47619 * 149.99760 * 3 2 1 7 7 C 1.37879 * 120.00155 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99597 * 359.97438 * 7 2 1 9 9 C 1.50693 * 120.00354 * 179.97438 * 7 2 1 10 10 N 1.46500 * 109.47286 * 179.97438 * 9 7 2 11 11 N 1.40007 * 125.97798 * 269.68628 * 10 9 7 12 12 C 1.30192 * 109.79466 * 180.26425 * 11 10 9 13 13 C 1.41464 * 108.72611 * 0.02562 * 12 11 10 14 14 C 1.40313 * 133.36256 * 180.02562 * 13 12 11 15 15 C 1.35996 * 120.05234 * 180.02562 * 14 13 12 16 16 C 1.40373 * 120.53598 * 359.97231 * 15 14 13 17 17 C 1.47569 * 119.87612 * 180.02562 * 16 15 14 18 18 O 1.21491 * 120.00260 * 180.02562 * 17 16 15 19 19 O 1.34734 * 119.99746 * 0.02562 * 17 16 15 20 20 C 1.39126 * 120.25231 * 0.02660 * 16 15 14 21 21 C 1.37275 * 125.97006 * 90.00296 * 10 9 7 22 22 H 0.96998 * 120.00115 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.47032 * 59.99880 * 9 7 2 24 24 H 1.09004 * 109.47312 * 300.00095 * 9 7 2 25 25 H 1.08002 * 125.63734 * 179.97438 * 12 11 10 26 26 H 1.08001 * 119.97291 * 0.02562 * 14 13 12 27 27 H 1.08001 * 119.73549 * 180.02562 * 15 14 13 28 28 H 0.96695 * 117.00149 * 180.02562 * 19 17 16 29 29 H 1.07995 * 120.19200 * 179.97438 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5115 -1.1941 0.0000 10 7 3.9998 -2.5753 0.0013 11 7 4.2802 -3.3475 1.1350 12 6 4.7003 -4.5255 0.7733 13 6 4.7178 -4.5872 -0.6399 14 6 5.0725 -5.5890 -1.5561 15 6 4.9841 -5.3520 -2.8923 16 6 4.5386 -4.1089 -3.3683 17 6 4.4478 -3.8677 -4.8213 18 8 4.0629 -2.7925 -5.2358 19 8 4.7917 -4.8400 -5.6883 20 6 4.1824 -3.1032 -2.4754 21 6 4.2682 -3.3367 -1.1089 22 1 -0.4850 0.8400 0.0004 23 1 3.8752 -0.6797 0.8895 24 1 3.8745 -0.6809 -0.8905 25 1 4.9887 -5.3233 1.4417 26 1 5.4161 -6.5489 -1.1999 27 1 5.2581 -6.1269 -3.5930 28 1 4.7159 -4.6352 -6.6303 29 1 3.8401 -2.1470 -2.8426 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309494123.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:24 Heat of formation + Delta-G solvation = -25.410262 kcal Electronic energy + Delta-G solvation = -16848.060570 eV Core-core repulsion = 13929.612641 eV Total energy + Delta-G solvation = -2918.447929 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.44918 -41.13329 -37.99169 -37.09711 -35.75368 -34.04529 -31.72356 -31.29295 -29.18198 -25.96632 -24.97632 -23.22155 -22.19792 -21.53471 -19.30277 -19.20415 -18.38529 -17.96048 -16.89157 -16.71755 -16.43763 -15.84856 -15.68445 -15.30834 -14.89499 -14.50806 -14.26955 -13.89885 -13.50778 -13.36377 -12.85023 -12.65312 -12.54691 -12.25909 -12.09476 -11.89896 -11.78384 -11.73529 -11.01900 -10.95778 -9.77559 -8.87319 -8.47525 -6.58760 -0.60819 0.48013 1.23950 1.27828 1.30140 1.39603 1.52511 1.81050 2.06062 2.20190 2.80658 2.84508 3.54608 3.76099 3.85912 4.09924 4.14441 4.23672 4.45716 4.63954 4.66700 4.80645 4.99402 5.15916 5.23632 5.37312 5.53874 5.59228 5.78712 5.87886 6.20284 6.43209 6.73780 6.96016 7.05326 8.69256 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.020719 B = 0.007554 C = 0.005960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.082473 B = 3705.921171 C = 4696.534702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.022 3.978 3 Si 0.949 3.051 4 H -0.259 1.259 5 H -0.271 1.271 6 H -0.242 1.242 7 C -0.555 4.555 8 H 0.025 0.975 9 C 0.247 3.753 10 N -0.387 5.387 11 N -0.282 5.282 12 C 0.063 3.937 13 C -0.165 4.165 14 C -0.034 4.034 15 C -0.111 4.111 16 C -0.092 4.092 17 C 0.538 3.462 18 O -0.552 6.552 19 O -0.491 6.491 20 C -0.085 4.085 21 C 0.086 3.914 22 H 0.275 0.725 23 H 0.055 0.945 24 H 0.053 0.947 25 H 0.242 0.758 26 H 0.185 0.815 27 H 0.175 0.825 28 H 0.435 0.565 29 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.341 -12.327 -7.003 20.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.178 4.178 3 Si 0.770 3.230 4 H -0.184 1.184 5 H -0.196 1.196 6 H -0.165 1.165 7 C -0.594 4.594 8 H 0.043 0.957 9 C 0.127 3.873 10 N -0.173 5.173 11 N -0.096 5.096 12 C -0.130 4.130 13 C -0.173 4.173 14 C -0.054 4.054 15 C -0.131 4.131 16 C -0.096 4.096 17 C 0.383 3.617 18 O -0.445 6.445 19 O -0.304 6.304 20 C -0.107 4.107 21 C -0.031 4.031 22 H 0.084 0.916 23 H 0.073 0.927 24 H 0.070 0.930 25 H 0.258 0.742 26 H 0.202 0.798 27 H 0.193 0.807 28 H 0.297 0.703 29 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 13.769 -11.056 -5.679 18.549 hybrid contribution -0.586 0.983 -1.185 1.647 sum 13.183 -10.074 -6.864 17.955 Atomic orbital electron populations 1.70021 1.08335 1.28992 1.50005 1.25838 0.95752 1.03330 0.92926 0.85702 0.79676 0.77728 0.79915 1.18392 1.19569 1.16507 1.21310 0.90479 0.93680 1.53887 0.95698 1.19623 0.93529 0.75199 0.98995 1.48824 1.54299 1.12976 1.01195 1.76645 1.16355 1.05622 1.10984 1.24705 0.98788 0.95665 0.93887 1.19607 1.08330 0.94517 0.94861 1.20783 0.95336 0.98364 0.90883 1.21113 1.00153 0.95221 0.96590 1.18863 1.05829 0.96345 0.88586 1.20717 0.72348 0.80857 0.87757 1.90912 1.45224 1.27843 1.80489 1.84486 1.79596 1.42816 1.23525 1.20125 1.00996 1.00111 0.89511 1.19094 1.00733 0.93555 0.89697 0.91622 0.92683 0.92959 0.74211 0.79816 0.80724 0.70312 0.86870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.79 13.96 21.45 0.30 -58.49 15 2 C 0.02 1.26 5.47 84.66 0.46 1.73 15 3 Si 0.95 43.07 27.47 68.60 1.88 44.96 15 4 H -0.26 -11.30 7.11 99.48 0.71 -10.59 15 5 H -0.27 -11.88 7.11 99.48 0.71 -11.18 15 6 H -0.24 -10.06 6.54 99.48 0.65 -9.41 15 7 C -0.56 -33.30 9.94 25.60 0.25 -33.04 15 8 H 0.02 1.71 8.06 -2.91 -0.02 1.68 15 9 C 0.25 12.39 5.24 85.63 0.45 12.84 15 10 N -0.39 -17.92 3.66 -343.42 -1.26 -19.18 15 11 N -0.28 -11.69 12.44 -56.29 -0.70 -12.39 15 12 C 0.06 1.90 12.04 85.73 1.03 2.93 15 13 C -0.16 -5.11 6.17 -21.32 -0.13 -5.24 15 14 C -0.03 -0.71 10.04 22.25 0.22 -0.48 15 15 C -0.11 -2.42 9.53 22.27 0.21 -2.21 15 16 C -0.09 -2.77 5.87 -20.08 -0.12 -2.89 15 17 C 0.54 15.10 8.26 70.28 0.58 15.68 15 18 O -0.55 -20.04 17.10 19.86 0.34 -19.70 15 19 O -0.49 -8.44 12.65 -56.44 -0.71 -9.16 15 20 C -0.09 -3.30 9.56 22.64 0.22 -3.08 15 21 C 0.09 3.50 6.88 39.11 0.27 3.77 15 22 H 0.27 15.86 8.31 -92.71 -0.77 15.09 15 23 H 0.06 2.68 7.20 -2.39 -0.02 2.67 15 24 H 0.05 2.48 7.57 -2.39 -0.02 2.47 15 25 H 0.24 4.26 8.06 -2.91 -0.02 4.24 15 26 H 0.18 1.99 8.06 -2.91 -0.02 1.97 15 27 H 0.18 2.47 7.58 -2.91 -0.02 2.45 15 28 H 0.43 3.39 9.11 -74.06 -0.67 2.72 15 29 H 0.11 4.89 7.62 -2.91 -0.02 4.87 15 Total: -1.00 -80.78 268.58 3.77 -77.01 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: 0.47 Total: 6.97 kcal Atomic # 6 Polarization: -13.46 SS G_CDS: 3.45 Total: -10.00 kcal Atomic # 7 Polarization: -88.41 SS G_CDS: -1.66 Total: -90.07 kcal Atomic # 8 Polarization: -28.49 SS G_CDS: -0.37 Total: -28.86 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 1.88 Total: 44.96 kcal Total: -80.78 3.77 -77.01 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309494123.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.599 kcal (2) G-P(sol) polarization free energy of solvation -80.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds