Wall clock time and date at job start Mon Mar 30 2020 03:50:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.39757 * 120.08064 * 289.91563 * 3 2 1 5 5 C 1.38055 * 120.14993 * 179.74824 * 4 3 2 6 6 C 1.38084 * 120.30951 * 0.55465 * 5 4 3 7 7 C 1.50703 * 119.92295 * 179.72277 * 6 5 4 8 8 H 1.09002 * 109.47152 * 219.72561 * 7 6 5 9 9 N 1.46899 * 109.47107 * 339.72474 * 7 6 5 10 10 C 1.50699 * 109.47227 * 99.72678 * 7 6 5 11 11 H 1.07999 * 120.00019 * 359.97438 * 10 7 6 12 12 C 1.37877 * 120.00129 * 180.02562 * 10 7 6 13 13 N 1.31519 * 119.99723 * 359.97438 * 12 10 7 14 14 Si 1.86803 * 119.99900 * 179.97438 * 12 10 7 15 15 H 1.48501 * 109.47147 * 90.00197 * 14 12 10 16 16 H 1.48499 * 109.46797 * 209.99607 * 14 12 10 17 17 H 1.48500 * 109.47032 * 329.99738 * 14 12 10 18 18 C 1.39712 * 120.15147 * 359.44690 * 6 5 4 19 19 C 1.47746 * 120.07215 * 180.25197 * 18 6 5 20 20 O 1.21467 * 120.00617 * 0.02562 * 19 18 6 21 21 O 1.34714 * 119.99768 * 180.02562 * 19 18 6 22 22 C 1.39349 * 120.07727 * 109.94315 * 3 2 1 23 23 H 1.08001 * 119.92119 * 0.05375 * 4 3 2 24 24 H 1.08002 * 119.84626 * 180.29853 * 5 4 3 25 25 H 1.00903 * 110.99833 * 59.99796 * 9 7 6 26 26 H 1.00901 * 111.00152 * 183.95033 * 9 7 6 27 27 H 0.97003 * 119.99231 * 179.97438 * 13 12 10 28 28 H 0.96698 * 117.00170 * 180.02562 * 21 19 18 29 29 H 1.08007 * 120.15039 * 359.97438 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2687 -0.4110 1.1370 5 6 4.6492 -0.4159 1.1368 6 6 5.3474 -0.0039 0.0190 7 6 6.8543 -0.0068 0.0305 8 1 7.2233 0.8818 -0.4817 9 7 7.3334 -0.0061 1.4191 10 6 7.3597 -1.2391 -0.6746 11 1 6.6597 -1.9494 -1.0892 12 6 8.7157 -1.4604 -0.7895 13 7 9.5682 -0.5957 -0.2842 14 14 9.3421 -2.9883 -1.6629 15 1 9.5192 -2.6949 -3.1078 16 1 10.6448 -3.3942 -1.0770 17 1 8.3602 -4.0901 -1.4981 18 6 4.6599 0.4102 -1.1247 19 6 5.4087 0.8453 -2.3217 20 8 6.6233 0.8430 -2.3125 21 8 4.7443 1.2448 -3.4234 22 6 3.2662 0.4123 -1.1335 23 1 2.7288 -0.7307 2.0161 24 1 5.1857 -0.7395 2.0165 25 1 7.0045 -0.8206 1.9156 26 1 8.3399 0.0569 1.4544 27 1 10.5222 -0.7516 -0.3648 28 1 5.2773 1.5201 -4.1818 29 1 2.7297 0.7314 -2.0150 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309536381.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:17 Heat of formation + Delta-G solvation = -29.649277 kcal Electronic energy + Delta-G solvation = -17164.662995 eV Core-core repulsion = 14246.031248 eV Total energy + Delta-G solvation = -2918.631747 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.11525 -38.53090 -36.50602 -35.56381 -34.53503 -31.80315 -31.26432 -29.74628 -26.25345 -24.43042 -23.68638 -21.37298 -20.61048 -18.51523 -17.34751 -16.62735 -15.84440 -15.70757 -15.06850 -14.97527 -14.43537 -14.06027 -13.81999 -13.40233 -12.93438 -12.80499 -12.74875 -12.37737 -11.99933 -11.68172 -11.27046 -11.15464 -11.03252 -10.85269 -10.78079 -10.13728 -10.02216 -9.28490 -8.82493 -8.68063 -8.27655 -7.30204 -6.09862 -4.21483 0.98693 1.23803 2.75496 2.89942 3.22901 3.29829 3.32087 3.38549 3.48377 4.03656 4.17201 4.36261 5.03458 5.08710 5.17489 5.43914 5.55110 5.85453 5.93650 6.12005 6.35863 6.41832 6.69347 6.81666 6.99534 7.05109 7.58673 7.70439 7.72201 8.01030 8.49949 8.61388 8.86413 9.02616 9.46086 10.91047 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.025522 B = 0.007507 C = 0.006721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.813488 B = 3728.861568 C = 4165.078475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C 0.270 3.730 3 C -0.080 4.080 4 C -0.041 4.041 5 C -0.126 4.126 6 C 0.063 3.937 7 C 0.222 3.778 8 H 0.090 0.910 9 N -0.854 5.854 10 C -0.522 4.522 11 H 0.051 0.949 12 C 0.072 3.928 13 N -0.890 5.890 14 Si 0.895 3.105 15 H -0.280 1.280 16 H -0.286 1.286 17 H -0.275 1.275 18 C -0.132 4.132 19 C 0.504 3.496 20 O -0.449 6.449 21 O -0.529 6.529 22 C -0.016 4.016 23 H 0.130 0.870 24 H 0.145 0.855 25 H 0.309 0.691 26 H 0.360 0.640 27 H 0.265 0.735 28 H 0.407 0.593 29 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.442 1.605 -0.511 7.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.116 5.116 2 C -0.044 4.044 3 C -0.084 4.084 4 C -0.062 4.062 5 C -0.144 4.144 6 C 0.061 3.939 7 C 0.113 3.887 8 H 0.107 0.893 9 N -0.385 5.385 10 C -0.562 4.562 11 H 0.069 0.931 12 C -0.130 4.130 13 N -0.529 5.529 14 Si 0.723 3.277 15 H -0.206 1.206 16 H -0.212 1.212 17 H -0.200 1.200 18 C -0.134 4.134 19 C 0.345 3.655 20 O -0.334 6.334 21 O -0.342 6.342 22 C -0.037 4.037 23 H 0.148 0.852 24 H 0.163 0.837 25 H 0.119 0.881 26 H 0.177 0.823 27 H 0.075 0.925 28 H 0.265 0.735 29 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -9.279 2.212 -0.064 9.539 hybrid contribution 1.666 -1.619 -1.413 2.719 sum -7.613 0.593 -1.478 7.778 Atomic orbital electron populations 1.81206 1.12127 1.10212 1.08101 1.25705 0.92575 0.92886 0.93244 1.15732 0.84085 1.11559 0.97031 1.21353 0.94556 0.94324 0.95960 1.20983 0.92345 1.01518 0.99545 1.21064 0.99626 0.83902 0.89303 1.18585 0.82989 0.99149 0.87999 0.89275 1.59704 1.19336 1.44308 1.15172 1.21401 0.91704 1.05540 1.37549 0.93102 1.24889 0.96684 0.96520 0.94947 1.69721 1.02432 1.35196 1.45510 0.86549 0.78164 0.82969 0.80009 1.20626 1.21187 1.19973 1.18727 0.92097 1.09169 0.93413 1.20791 0.86251 0.75758 0.82656 1.91083 1.13733 1.47151 1.81386 1.84517 1.45531 1.79043 1.25149 1.21316 0.92926 0.92979 0.96436 0.85183 0.83728 0.88122 0.82284 0.92548 0.73521 0.84369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -6.88 18.54 41.84 0.78 -6.10 15 2 C 0.27 3.79 15.32 -22.47 -0.34 3.45 15 3 C -0.08 -1.10 5.73 -106.99 -0.61 -1.71 15 4 C -0.04 -0.55 9.75 -39.08 -0.38 -0.93 15 5 C -0.13 -1.98 9.23 -39.70 -0.37 -2.35 15 6 C 0.06 1.20 5.06 -104.13 -0.53 0.67 15 7 C 0.22 5.12 2.23 -70.02 -0.16 4.97 15 8 H 0.09 2.36 5.90 -51.93 -0.31 2.06 15 9 N -0.85 -18.50 8.67 -6.65 -0.06 -18.56 15 10 C -0.52 -13.29 7.40 -34.44 -0.25 -13.55 15 11 H 0.05 1.32 7.74 -52.49 -0.41 0.91 15 12 C 0.07 1.89 5.38 -17.82 -0.10 1.79 15 13 N -0.89 -23.88 11.54 55.43 0.64 -23.24 15 14 Si 0.90 20.65 29.54 -169.99 -5.02 15.63 15 15 H -0.28 -6.57 7.11 56.52 0.40 -6.17 15 16 H -0.29 -6.54 7.11 56.52 0.40 -6.14 15 17 H -0.27 -6.27 7.11 56.52 0.40 -5.87 15 18 C -0.13 -2.32 5.86 -105.04 -0.62 -2.93 15 19 C 0.50 9.16 8.21 34.62 0.28 9.44 15 20 O -0.45 -10.06 13.09 -19.24 -0.25 -10.31 15 21 O -0.53 -7.27 12.67 -40.53 -0.51 -7.78 15 22 C -0.02 -0.23 9.32 -38.75 -0.36 -0.59 15 23 H 0.13 1.34 8.06 -52.49 -0.42 0.92 15 24 H 0.15 2.15 6.22 -52.49 -0.33 1.82 15 25 H 0.31 6.13 7.26 -39.29 -0.29 5.85 15 26 H 0.36 8.59 7.08 -39.29 -0.28 8.32 15 27 H 0.26 6.85 8.31 -40.82 -0.34 6.51 15 28 H 0.41 3.85 9.11 45.56 0.42 4.27 15 29 H 0.14 1.74 7.61 -52.48 -0.40 1.34 15 LS Contribution 266.14 15.07 4.01 4.01 Total: -1.00 -29.28 266.14 -4.99 -34.27 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: -1.14 Total: 13.80 kcal Atomic # 6 Polarization: 1.70 SS G_CDS: -3.43 Total: -1.73 kcal Atomic # 7 Polarization: -49.26 SS G_CDS: 1.36 Total: -47.90 kcal Atomic # 8 Polarization: -17.32 SS G_CDS: -0.77 Total: -18.09 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -29.28 -4.99 -34.27 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309536381.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.624 kcal (2) G-P(sol) polarization free energy of solvation -29.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds