Wall clock time and date at job start Mon Mar 30 2020 03:50:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.39757 * 120.08064 * 289.91563 * 3 2 1 5 5 C 1.38055 * 120.14993 * 179.74824 * 4 3 2 6 6 C 1.38084 * 120.30951 * 0.55465 * 5 4 3 7 7 C 1.50703 * 119.92295 * 179.72277 * 6 5 4 8 8 H 1.09002 * 109.47152 * 219.72561 * 7 6 5 9 9 N 1.46899 * 109.47107 * 339.72474 * 7 6 5 10 10 C 1.50699 * 109.47227 * 99.72678 * 7 6 5 11 11 H 1.07999 * 120.00019 * 359.97438 * 10 7 6 12 12 C 1.37877 * 120.00129 * 180.02562 * 10 7 6 13 13 N 1.31519 * 119.99723 * 359.97438 * 12 10 7 14 14 Si 1.86803 * 119.99900 * 179.97438 * 12 10 7 15 15 H 1.48501 * 109.47147 * 90.00197 * 14 12 10 16 16 H 1.48499 * 109.46797 * 209.99607 * 14 12 10 17 17 H 1.48500 * 109.47032 * 329.99738 * 14 12 10 18 18 C 1.39712 * 120.15147 * 359.44690 * 6 5 4 19 19 C 1.47746 * 120.07215 * 180.25197 * 18 6 5 20 20 O 1.21467 * 120.00617 * 0.02562 * 19 18 6 21 21 O 1.34714 * 119.99768 * 180.02562 * 19 18 6 22 22 C 1.39349 * 120.07727 * 109.94315 * 3 2 1 23 23 H 1.08001 * 119.92119 * 0.05375 * 4 3 2 24 24 H 1.08002 * 119.84626 * 180.29853 * 5 4 3 25 25 H 1.00903 * 110.99833 * 59.99796 * 9 7 6 26 26 H 1.00901 * 111.00152 * 183.95033 * 9 7 6 27 27 H 0.97003 * 119.99231 * 179.97438 * 13 12 10 28 28 H 0.96698 * 117.00170 * 180.02562 * 21 19 18 29 29 H 1.08007 * 120.15039 * 359.97438 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2687 -0.4110 1.1370 5 6 4.6492 -0.4159 1.1368 6 6 5.3474 -0.0039 0.0190 7 6 6.8543 -0.0068 0.0305 8 1 7.2233 0.8818 -0.4817 9 7 7.3334 -0.0061 1.4191 10 6 7.3597 -1.2391 -0.6746 11 1 6.6597 -1.9494 -1.0892 12 6 8.7157 -1.4604 -0.7895 13 7 9.5682 -0.5957 -0.2842 14 14 9.3421 -2.9883 -1.6629 15 1 9.5192 -2.6949 -3.1078 16 1 10.6448 -3.3942 -1.0770 17 1 8.3602 -4.0901 -1.4981 18 6 4.6599 0.4102 -1.1247 19 6 5.4087 0.8453 -2.3217 20 8 6.6233 0.8430 -2.3125 21 8 4.7443 1.2448 -3.4234 22 6 3.2662 0.4123 -1.1335 23 1 2.7288 -0.7307 2.0161 24 1 5.1857 -0.7395 2.0165 25 1 7.0045 -0.8206 1.9156 26 1 8.3399 0.0569 1.4544 27 1 10.5222 -0.7516 -0.3648 28 1 5.2773 1.5201 -4.1818 29 1 2.7297 0.7314 -2.0150 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309536381.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:17 Heat of formation + Delta-G solvation = -50.458103 kcal Electronic energy + Delta-G solvation = -17165.565333 eV Core-core repulsion = 14246.031248 eV Total energy + Delta-G solvation = -2919.534085 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.46228 -39.82078 -37.78862 -36.90412 -36.15825 -33.55961 -32.51505 -31.21650 -28.05482 -25.88041 -25.07938 -22.63002 -22.18377 -19.73834 -18.70460 -18.52930 -17.30696 -17.06813 -16.44073 -16.36592 -16.12308 -15.41016 -15.00991 -14.71996 -14.68632 -14.15606 -14.06746 -13.66723 -13.45028 -13.17902 -12.93914 -12.77977 -12.59117 -12.37420 -12.29102 -11.94894 -11.68416 -10.92641 -10.50648 -10.02838 -9.68836 -9.11865 -8.03375 -6.21446 -0.27055 0.03412 1.38145 1.41173 1.48401 1.61244 1.62390 2.13832 2.25666 2.42854 2.84928 2.97061 3.18499 3.90769 3.98582 4.06481 4.35227 4.57921 4.66923 4.89368 4.96542 5.13924 5.31008 5.41999 5.70441 5.77891 5.80351 6.00093 6.12345 6.46163 6.76343 6.97391 7.19518 7.26587 7.49274 8.94003 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.025522 B = 0.007507 C = 0.006721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.813488 B = 3728.861568 C = 4165.078475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.461 5.461 2 C 0.291 3.709 3 C -0.067 4.067 4 C -0.016 4.016 5 C -0.128 4.128 6 C 0.033 3.967 7 C 0.226 3.774 8 H 0.048 0.952 9 N -0.844 5.844 10 C -0.522 4.522 11 H 0.040 0.960 12 C 0.026 3.974 13 N -0.915 5.915 14 Si 0.947 3.053 15 H -0.287 1.287 16 H -0.282 1.282 17 H -0.269 1.269 18 C -0.150 4.150 19 C 0.508 3.492 20 O -0.504 6.504 21 O -0.511 6.511 22 C -0.001 4.001 23 H 0.170 0.830 24 H 0.152 0.848 25 H 0.320 0.680 26 H 0.347 0.653 27 H 0.262 0.738 28 H 0.426 0.574 29 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.723 0.963 -0.201 9.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.137 5.137 2 C -0.023 4.023 3 C -0.071 4.071 4 C -0.037 4.037 5 C -0.146 4.146 6 C 0.032 3.968 7 C 0.117 3.883 8 H 0.066 0.934 9 N -0.374 5.374 10 C -0.562 4.562 11 H 0.058 0.942 12 C -0.174 4.174 13 N -0.555 5.555 14 Si 0.773 3.227 15 H -0.214 1.214 16 H -0.207 1.207 17 H -0.193 1.193 18 C -0.152 4.152 19 C 0.352 3.648 20 O -0.392 6.392 21 O -0.326 6.326 22 C -0.022 4.022 23 H 0.187 0.813 24 H 0.169 0.831 25 H 0.131 0.869 26 H 0.161 0.839 27 H 0.072 0.928 28 H 0.287 0.713 29 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -11.605 1.569 0.228 11.713 hybrid contribution 2.218 -1.366 -1.544 3.028 sum -9.388 0.203 -1.317 9.482 Atomic orbital electron populations 1.81259 1.12787 1.10824 1.08799 1.25456 0.92127 0.92172 0.92531 1.15725 0.83863 1.10580 0.96886 1.21649 0.93345 0.91792 0.96865 1.21037 0.93510 1.01461 0.98628 1.20836 0.97560 0.86914 0.91528 1.18234 0.85994 0.96519 0.87585 0.93411 1.59653 1.18187 1.44791 1.14762 1.21617 0.91562 1.06247 1.36773 0.94154 1.25537 0.97181 0.98793 0.95890 1.69828 1.02343 1.36508 1.46821 0.85743 0.77856 0.80546 0.78506 1.21392 1.20746 1.19314 1.18771 0.93324 1.10230 0.92841 1.21039 0.85671 0.74544 0.83554 1.91078 1.15942 1.49716 1.82437 1.84460 1.45060 1.78160 1.24908 1.21426 0.91471 0.91782 0.97491 0.81301 0.83060 0.86947 0.83863 0.92820 0.71271 0.82206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -12.81 18.54 19.00 0.35 -12.46 15 2 C 0.29 7.02 15.32 88.33 1.35 8.37 15 3 C -0.07 -1.57 5.73 -21.40 -0.12 -1.69 15 4 C -0.02 -0.37 9.75 22.59 0.22 -0.15 15 5 C -0.13 -3.76 9.23 22.19 0.20 -3.56 15 6 C 0.03 1.26 5.06 -19.54 -0.10 1.16 15 7 C 0.23 10.71 2.23 43.42 0.10 10.81 15 8 H 0.05 2.68 5.90 -2.39 -0.01 2.66 15 9 N -0.84 -37.18 8.67 -174.95 -1.52 -38.70 15 10 C -0.52 -27.12 7.40 25.60 0.19 -26.93 15 11 H 0.04 2.12 7.74 -2.91 -0.02 2.10 15 12 C 0.03 1.36 5.38 84.65 0.46 1.82 15 13 N -0.91 -50.55 11.54 21.45 0.25 -50.31 15 14 Si 0.95 42.95 29.54 68.60 2.03 44.98 15 15 H -0.29 -13.26 7.11 99.48 0.71 -12.55 15 16 H -0.28 -12.48 7.11 99.48 0.71 -11.77 15 17 H -0.27 -11.77 7.11 99.48 0.71 -11.07 15 18 C -0.15 -5.10 5.86 -20.13 -0.12 -5.22 15 19 C 0.51 18.47 8.21 70.34 0.58 19.05 15 20 O -0.50 -23.40 13.09 19.94 0.26 -23.14 15 21 O -0.51 -13.30 12.67 -56.24 -0.71 -14.01 15 22 C 0.00 -0.03 9.32 22.81 0.21 0.19 15 23 H 0.17 2.53 8.06 -2.91 -0.02 2.50 15 24 H 0.15 4.17 6.22 -2.91 -0.02 4.16 15 25 H 0.32 12.67 7.26 -89.69 -0.65 12.02 15 26 H 0.35 17.03 7.08 -89.69 -0.63 16.39 15 27 H 0.26 13.97 8.31 -92.71 -0.77 13.20 15 28 H 0.43 7.50 9.11 -74.06 -0.67 6.83 15 29 H 0.16 3.43 7.61 -2.91 -0.02 3.41 15 Total: -1.00 -64.84 266.14 2.92 -61.92 By element: Atomic # 1 Polarization: 28.58 SS G_CDS: -0.71 Total: 27.87 kcal Atomic # 6 Polarization: 0.88 SS G_CDS: 2.97 Total: 3.85 kcal Atomic # 7 Polarization: -100.55 SS G_CDS: -0.92 Total: -101.46 kcal Atomic # 8 Polarization: -36.70 SS G_CDS: -0.45 Total: -37.15 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Total: -64.84 2.92 -61.92 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309536381.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.464 kcal (2) G-P(sol) polarization free energy of solvation -64.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds