Wall clock time and date at job start Mon Mar 30 2020 03:50:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39768 * 120.07774 * 314.24557 * 3 2 1 5 5 C 1.38053 * 120.14897 * 179.97438 * 4 3 2 6 6 C 1.38090 * 120.31139 * 359.97228 * 5 4 3 7 7 C 1.50699 * 119.92301 * 180.02562 * 6 5 4 8 8 H 1.09007 * 109.46692 * 138.68050 * 7 6 5 9 9 N 1.46894 * 109.47170 * 18.68437 * 7 6 5 10 10 C 1.50701 * 109.47425 * 258.67941 * 7 6 5 11 11 H 1.08007 * 119.99606 * 0.02562 * 10 7 6 12 12 C 1.37872 * 120.00030 * 179.97438 * 10 7 6 13 13 N 1.31507 * 120.00171 * 0.02562 * 12 10 7 14 14 Si 1.86797 * 119.99845 * 180.02562 * 12 10 7 15 15 H 1.48494 * 109.47222 * 180.02562 * 14 12 10 16 16 H 1.48507 * 109.47201 * 299.99814 * 14 12 10 17 17 H 1.48498 * 109.47347 * 59.99746 * 14 12 10 18 18 C 1.39713 * 120.15224 * 0.29545 * 6 5 4 19 19 C 1.47743 * 120.07497 * 179.72811 * 18 6 5 20 20 O 1.21461 * 120.00272 * 4.50108 * 19 18 6 21 21 O 1.34714 * 119.99854 * 184.50171 * 19 18 6 22 22 C 1.39342 * 120.08098 * 134.21787 * 3 2 1 23 23 H 1.07998 * 119.92229 * 359.97438 * 4 3 2 24 24 H 1.07997 * 119.84351 * 179.97438 * 5 4 3 25 25 H 1.00901 * 111.00573 * 300.00010 * 9 7 6 26 26 H 1.00905 * 111.00098 * 63.95285 * 9 7 6 27 27 H 0.97005 * 120.00304 * 0.02562 * 13 12 10 28 28 H 0.96701 * 116.99652 * 179.97438 * 21 19 18 29 29 H 1.08002 * 120.14822 * 0.04120 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2688 -0.8429 0.8664 5 6 4.6494 -0.8439 0.8673 6 6 5.3474 -0.0132 0.0131 7 6 6.8543 -0.0218 0.0210 8 1 7.2233 0.0281 -1.0035 9 7 7.3337 -1.2575 0.6544 10 6 7.3595 1.1683 0.7953 11 1 6.6593 1.8613 1.2379 12 6 8.7155 1.3717 0.9396 13 7 9.5681 0.5276 0.4011 14 14 9.3416 2.8465 1.9000 15 1 10.8265 2.8381 1.9076 16 1 8.8575 4.0960 1.2598 17 1 8.8385 2.7784 3.2955 18 6 4.6598 0.8393 -0.8543 19 6 5.4084 1.7316 -1.7632 20 8 6.6201 1.6670 -1.8159 21 8 4.7470 2.6170 -2.5335 22 6 3.2660 0.8418 -0.8642 23 1 2.7291 -1.4955 1.5367 24 1 5.1859 -1.4974 1.5391 25 1 7.0048 -1.3274 1.6057 26 1 7.0624 -2.0677 0.1176 27 1 9.2430 -0.2381 -0.0979 28 1 5.2798 3.1798 -3.1119 29 1 2.7295 1.4959 -1.5356 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309536392.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:19 Heat of formation + Delta-G solvation = -26.439995 kcal Electronic energy + Delta-G solvation = -17210.630037 eV Core-core repulsion = 14292.137455 eV Total energy + Delta-G solvation = -2918.492582 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.26569 -38.67605 -36.67263 -35.66130 -34.72689 -31.74523 -31.43882 -29.84912 -26.11896 -24.36764 -23.53372 -21.50938 -20.84857 -18.67018 -17.44741 -16.96343 -15.94902 -15.63439 -15.27150 -15.02665 -14.50076 -14.00029 -13.92884 -13.65478 -13.29538 -12.97130 -12.86698 -12.48176 -12.04717 -11.98255 -11.48855 -11.17454 -11.02581 -10.70908 -10.58325 -10.04791 -9.46215 -9.10156 -9.00095 -8.34988 -8.13335 -7.63308 -6.15421 -3.95469 0.81838 1.06768 2.63799 2.73904 3.25723 3.39656 3.48347 3.50265 3.68138 3.89793 4.02786 4.62763 4.86998 4.90963 5.28420 5.34319 5.50069 5.65582 5.73578 5.93617 6.04473 6.19973 6.39398 6.55183 6.82065 6.87536 7.27553 7.46743 7.94581 8.20940 8.40653 8.62509 8.67499 9.06310 9.85213 11.26062 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.025434 B = 0.007563 C = 0.006770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.624606 B = 3701.410426 C = 4134.701835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C 0.268 3.732 3 C -0.078 4.078 4 C -0.035 4.035 5 C -0.147 4.147 6 C 0.024 3.976 7 C 0.221 3.779 8 H 0.084 0.916 9 N -0.832 5.832 10 C -0.588 4.588 11 H 0.041 0.959 12 C 0.044 3.956 13 N -0.887 5.887 14 Si 1.062 2.938 15 H -0.284 1.284 16 H -0.292 1.292 17 H -0.290 1.290 18 C -0.126 4.126 19 C 0.506 3.494 20 O -0.449 6.449 21 O -0.528 6.528 22 C -0.013 4.013 23 H 0.131 0.869 24 H 0.138 0.862 25 H 0.325 0.675 26 H 0.303 0.697 27 H 0.290 0.710 28 H 0.409 0.591 29 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.510 -0.921 -2.406 9.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.111 5.111 2 C -0.047 4.047 3 C -0.082 4.082 4 C -0.056 4.056 5 C -0.166 4.166 6 C 0.020 3.980 7 C 0.112 3.888 8 H 0.101 0.899 9 N -0.361 5.361 10 C -0.626 4.626 11 H 0.059 0.941 12 C -0.166 4.166 13 N -0.521 5.521 14 Si 0.891 3.109 15 H -0.209 1.209 16 H -0.218 1.218 17 H -0.217 1.217 18 C -0.128 4.128 19 C 0.347 3.653 20 O -0.333 6.333 21 O -0.342 6.342 22 C -0.034 4.034 23 H 0.149 0.851 24 H 0.155 0.845 25 H 0.139 0.861 26 H 0.114 0.886 27 H 0.103 0.897 28 H 0.267 0.733 29 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -9.001 -0.163 -1.780 9.177 hybrid contribution -1.828 -0.514 -0.674 2.015 sum -10.830 -0.678 -2.453 11.125 Atomic orbital electron populations 1.81217 1.12046 1.08957 1.08874 1.25656 0.92526 0.93230 0.93249 1.15729 0.84209 1.04360 1.03857 1.21302 0.94337 0.94994 0.94935 1.20945 0.92966 1.01777 1.00884 1.22159 1.01870 0.87003 0.86965 1.19048 0.81081 0.89988 0.98679 0.89914 1.59488 1.67529 1.03713 1.05361 1.21315 0.94025 1.08942 1.38360 0.94103 1.25470 0.92949 1.01365 0.96817 1.70519 1.37825 1.13668 1.30058 0.83678 0.76234 0.75230 0.75741 1.20892 1.21845 1.21719 1.18751 0.92001 1.01063 1.00958 1.20696 0.86094 0.79322 0.79187 1.91050 1.13844 1.65572 1.62844 1.84506 1.45687 1.49668 1.54302 1.21405 0.93064 0.94280 0.94677 0.85063 0.84462 0.86088 0.88555 0.89711 0.73341 0.84204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -6.61 18.54 41.84 0.78 -5.84 15 2 C 0.27 3.64 15.32 -22.47 -0.34 3.30 15 3 C -0.08 -1.03 5.73 -106.99 -0.61 -1.64 15 4 C -0.04 -0.44 9.75 -39.08 -0.38 -0.82 15 5 C -0.15 -2.19 9.21 -39.70 -0.37 -2.55 15 6 C 0.02 0.43 5.07 -104.13 -0.53 -0.09 15 7 C 0.22 4.99 1.75 -70.02 -0.12 4.86 15 8 H 0.08 2.13 5.76 -51.92 -0.30 1.83 15 9 N -0.83 -17.19 7.24 -6.65 -0.05 -17.24 15 10 C -0.59 -15.44 7.39 -34.44 -0.25 -15.69 15 11 H 0.04 1.10 7.74 -52.48 -0.41 0.69 15 12 C 0.04 1.23 5.39 -17.82 -0.10 1.13 15 13 N -0.89 -26.14 13.50 55.43 0.75 -25.39 15 14 Si 1.06 24.97 29.90 -169.99 -5.08 19.88 15 15 H -0.28 -6.73 7.11 56.52 0.40 -6.32 15 16 H -0.29 -6.68 7.11 56.52 0.40 -6.28 15 17 H -0.29 -6.53 7.11 56.52 0.40 -6.13 15 18 C -0.13 -2.16 5.85 -105.04 -0.61 -2.77 15 19 C 0.51 9.12 8.15 34.62 0.28 9.40 15 20 O -0.45 -10.00 13.14 -19.24 -0.25 -10.26 15 21 O -0.53 -7.21 12.69 -40.53 -0.51 -7.73 15 22 C -0.01 -0.19 9.32 -38.74 -0.36 -0.55 15 23 H 0.13 1.27 8.06 -52.49 -0.42 0.85 15 24 H 0.14 1.86 6.22 -52.49 -0.33 1.53 15 25 H 0.32 6.29 7.30 -39.29 -0.29 6.01 15 26 H 0.30 5.37 9.04 -39.29 -0.36 5.02 15 27 H 0.29 8.53 6.40 -40.82 -0.26 8.27 15 28 H 0.41 3.85 9.11 45.56 0.42 4.26 15 29 H 0.14 1.71 7.62 -52.49 -0.40 1.31 15 LS Contribution 266.50 15.07 4.02 4.02 Total: -1.00 -32.04 266.50 -4.89 -36.94 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -1.14 Total: 11.04 kcal Atomic # 6 Polarization: -2.03 SS G_CDS: -3.40 Total: -5.42 kcal Atomic # 7 Polarization: -49.95 SS G_CDS: 1.48 Total: -48.47 kcal Atomic # 8 Polarization: -17.22 SS G_CDS: -0.77 Total: -17.98 kcal Atomic # 14 Polarization: 24.97 SS G_CDS: -5.08 Total: 19.88 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -32.04 -4.89 -36.94 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309536392.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.498 kcal (2) G-P(sol) polarization free energy of solvation -32.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds