Wall clock time and date at job start Mon Mar 30 2020 03:49:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.43192 * 179.97438 * 2 1 4 4 C 1.39344 * 120.21740 * 292.08914 * 3 2 1 5 5 C 1.38127 * 119.99582 * 180.02562 * 4 3 2 6 6 C 1.38440 * 120.43513 * 359.97438 * 5 4 3 7 7 C 1.50693 * 119.78553 * 180.02562 * 6 5 4 8 8 H 1.08999 * 109.47626 * 159.99935 * 7 6 5 9 9 N 1.46904 * 109.47110 * 40.00079 * 7 6 5 10 10 C 1.50696 * 109.47317 * 280.00552 * 7 6 5 11 11 H 1.08010 * 120.00223 * 5.59024 * 10 7 6 12 12 C 1.37880 * 120.00456 * 185.58861 * 10 7 6 13 13 N 1.31516 * 120.00089 * 194.80932 * 12 10 7 14 14 Si 1.86803 * 119.99769 * 14.80959 * 12 10 7 15 15 H 1.48497 * 109.47152 * 180.02562 * 14 12 10 16 16 H 1.48495 * 109.46860 * 59.99751 * 14 12 10 17 17 H 1.48508 * 109.46999 * 300.00271 * 14 12 10 18 18 C 1.38113 * 120.43492 * 0.28087 * 6 5 4 19 19 C 1.39356 * 119.99475 * 359.45180 * 18 6 5 20 20 C 1.47690 * 120.21651 * 180.27403 * 19 18 6 21 21 O 1.21478 * 119.99799 * 180.26637 * 20 19 18 22 22 O 1.34722 * 120.00120 * 0.26792 * 20 19 18 23 23 H 1.08001 * 120.00482 * 359.97438 * 4 3 2 24 24 H 1.08000 * 119.77999 * 180.02562 * 5 4 3 25 25 H 1.00897 * 111.00482 * 179.09744 * 9 7 6 26 26 H 1.00901 * 110.99654 * 303.05537 * 9 7 6 27 27 H 0.96994 * 120.00282 * 354.89757 * 13 12 10 28 28 H 1.08000 * 120.00231 * 179.72132 * 18 6 5 29 29 H 0.96693 * 117.00149 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2695 -0.4518 1.1157 5 6 4.6507 -0.4487 1.1110 6 6 5.3472 0.0015 0.0024 7 6 6.8541 -0.0021 0.0129 8 1 7.2247 0.0345 -1.0115 9 7 7.3364 -1.2272 0.6645 10 6 7.3541 1.2004 0.7712 11 1 6.6544 1.8479 1.2790 12 6 8.7047 1.4740 0.8170 13 7 9.1725 2.3309 1.6982 14 14 9.8699 0.6277 -0.3727 15 1 11.2581 1.0901 -0.1192 16 1 9.4830 0.9623 -1.7668 17 1 9.7949 -0.8426 -0.1775 18 6 4.6700 0.4588 -1.1110 19 6 3.2766 0.4584 -1.1279 20 6 2.5475 0.9406 -2.3183 21 8 1.3327 0.9431 -2.3268 22 8 3.2296 1.3779 -3.3947 23 1 2.7333 -0.8042 1.9845 24 1 5.1909 -0.8006 1.9775 25 1 8.3448 -1.2604 0.6711 26 1 6.9658 -1.3093 1.5994 27 1 8.5609 2.8255 2.2658 28 1 5.2204 0.8126 -1.9703 29 1 2.7089 1.6834 -4.1500 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309540951.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:56 Heat of formation + Delta-G solvation = -37.218426 kcal Electronic energy + Delta-G solvation = -16794.522675 eV Core-core repulsion = 13875.562706 eV Total energy + Delta-G solvation = -2918.959970 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.52521 -38.90644 -36.62368 -35.87947 -34.93455 -32.18676 -31.39047 -30.33799 -26.35386 -24.83993 -23.39447 -21.94805 -20.21543 -18.74743 -18.11486 -17.81171 -16.49993 -15.90619 -15.68840 -15.04850 -14.26604 -14.16753 -13.74572 -13.54542 -13.26994 -13.12941 -12.76726 -12.52467 -12.37563 -11.93163 -11.76650 -11.56236 -11.53359 -10.94323 -10.45956 -10.35954 -10.21077 -9.48696 -8.99061 -8.70893 -8.58684 -7.73284 -6.66795 -4.43772 0.54280 1.24084 2.59351 2.87368 3.00063 3.16477 3.23598 3.26610 3.41797 4.02220 4.06692 4.22124 4.80691 5.00465 5.04430 5.17369 5.45916 5.56025 5.74889 5.87064 5.98425 6.20124 6.37322 6.41198 6.53035 6.84863 7.06427 7.54483 7.72118 7.83638 8.00518 8.15916 8.29459 8.62193 9.30011 10.64756 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.030419 B = 0.006396 C = 0.005772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.265474 B = 4376.354553 C = 4849.992737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C 0.261 3.739 3 C 0.004 3.996 4 C -0.080 4.080 5 C -0.075 4.075 6 C -0.002 4.002 7 C 0.206 3.794 8 H 0.052 0.948 9 N -0.857 5.857 10 C -0.632 4.632 11 H 0.060 0.940 12 C 0.033 3.967 13 N -0.893 5.893 14 Si 1.046 2.954 15 H -0.283 1.283 16 H -0.279 1.279 17 H -0.271 1.271 18 C -0.062 4.062 19 C -0.091 4.091 20 C 0.526 3.474 21 O -0.511 6.511 22 O -0.505 6.505 23 H 0.137 0.863 24 H 0.138 0.862 25 H 0.335 0.665 26 H 0.326 0.674 27 H 0.271 0.729 28 H 0.145 0.855 29 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.592 -4.857 -5.096 8.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.090 5.090 2 C -0.054 4.054 3 C 0.000 4.000 4 C -0.101 4.101 5 C -0.094 4.094 6 C -0.004 4.004 7 C 0.096 3.904 8 H 0.070 0.930 9 N -0.389 5.389 10 C -0.671 4.671 11 H 0.078 0.922 12 C -0.174 4.174 13 N -0.525 5.525 14 Si 0.874 3.126 15 H -0.209 1.209 16 H -0.205 1.205 17 H -0.198 1.198 18 C -0.080 4.080 19 C -0.095 4.095 20 C 0.371 3.629 21 O -0.400 6.400 22 O -0.316 6.316 23 H 0.155 0.845 24 H 0.156 0.844 25 H 0.151 0.849 26 H 0.137 0.863 27 H 0.081 0.919 28 H 0.163 0.837 29 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -6.208 -5.517 -5.758 10.106 hybrid contribution -1.098 1.306 0.579 1.802 sum -7.307 -4.211 -5.179 9.897 Atomic orbital electron populations 1.81091 1.12041 1.07851 1.08024 1.25336 0.92442 0.94190 0.93385 1.15697 0.84406 1.04721 0.95131 1.21089 0.94369 0.98322 0.96282 1.21202 0.92574 0.96807 0.98803 1.20433 0.98005 0.90536 0.91417 1.18434 0.86004 0.89421 0.96498 0.92999 1.59866 1.14553 1.40320 1.24203 1.22592 0.94920 1.13015 1.36581 0.92186 1.25876 0.97139 0.97271 0.97131 1.70849 1.38332 1.25199 1.18137 0.83970 0.76455 0.76068 0.76095 1.20858 1.20507 1.19812 1.21328 0.91277 0.96264 0.99174 1.18847 0.93685 1.05638 0.91293 1.20898 0.85372 0.73836 0.82817 1.90928 1.14948 1.52196 1.81965 1.84592 1.44648 1.75915 1.26456 0.84535 0.84387 0.84905 0.86250 0.91865 0.83687 0.72847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -7.55 18.41 41.84 0.77 -6.78 15 2 C 0.26 4.34 12.76 -22.47 -0.29 4.06 15 3 C 0.00 0.06 5.76 -106.58 -0.61 -0.55 15 4 C -0.08 -1.08 9.74 -39.21 -0.38 -1.46 15 5 C -0.08 -1.14 9.25 -39.55 -0.37 -1.50 15 6 C 0.00 -0.04 4.90 -104.60 -0.51 -0.55 15 7 C 0.21 4.12 2.48 -70.02 -0.17 3.94 15 8 H 0.05 1.05 6.70 -51.93 -0.35 0.71 15 9 N -0.86 -15.87 9.09 -6.65 -0.06 -15.93 15 10 C -0.63 -15.26 9.03 -34.44 -0.31 -15.57 15 11 H 0.06 1.60 7.99 -52.48 -0.42 1.18 15 12 C 0.03 0.85 5.41 -17.82 -0.10 0.75 15 13 N -0.89 -24.82 13.70 55.43 0.76 -24.06 15 14 Si 1.05 22.00 26.43 -169.99 -4.49 17.51 15 15 H -0.28 -6.17 7.11 56.52 0.40 -5.77 15 16 H -0.28 -5.64 7.11 56.52 0.40 -5.24 15 17 H -0.27 -5.12 5.62 56.52 0.32 -4.81 15 18 C -0.06 -0.98 9.22 -39.21 -0.36 -1.34 15 19 C -0.09 -1.40 5.90 -104.64 -0.62 -2.01 15 20 C 0.53 7.78 8.25 34.59 0.29 8.07 15 21 O -0.51 -8.86 15.12 -19.25 -0.29 -9.15 15 22 O -0.50 -5.78 12.68 -40.55 -0.51 -6.29 15 23 H 0.14 1.45 8.06 -52.49 -0.42 1.03 15 24 H 0.14 1.93 6.58 -52.49 -0.35 1.59 15 25 H 0.34 6.43 5.47 -39.29 -0.22 6.22 15 26 H 0.33 5.61 7.20 -39.29 -0.28 5.33 15 27 H 0.27 7.57 8.73 -40.82 -0.36 7.21 15 28 H 0.15 2.17 7.58 -52.49 -0.40 1.77 15 29 H 0.41 2.69 9.11 45.56 0.42 3.10 15 LS Contribution 265.37 15.07 4.00 4.00 Total: -1.00 -30.03 265.37 -4.52 -34.55 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -1.25 Total: 12.32 kcal Atomic # 6 Polarization: -2.73 SS G_CDS: -3.44 Total: -6.17 kcal Atomic # 7 Polarization: -48.24 SS G_CDS: 1.47 Total: -46.77 kcal Atomic # 8 Polarization: -14.63 SS G_CDS: -0.81 Total: -15.44 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.49 Total: 17.51 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -30.03 -4.52 -34.55 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309540951.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.667 kcal (2) G-P(sol) polarization free energy of solvation -30.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds