Wall clock time and date at job start Mon Mar 30 2020 03:49:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.43192 * 179.97438 * 2 1 4 4 C 1.39344 * 120.21740 * 292.08914 * 3 2 1 5 5 C 1.38127 * 119.99582 * 180.02562 * 4 3 2 6 6 C 1.38440 * 120.43513 * 359.97438 * 5 4 3 7 7 C 1.50693 * 119.78553 * 180.02562 * 6 5 4 8 8 H 1.08999 * 109.47626 * 159.99935 * 7 6 5 9 9 N 1.46904 * 109.47110 * 40.00079 * 7 6 5 10 10 C 1.50696 * 109.47317 * 280.00552 * 7 6 5 11 11 H 1.08010 * 120.00223 * 5.59024 * 10 7 6 12 12 C 1.37880 * 120.00456 * 185.58861 * 10 7 6 13 13 N 1.31516 * 120.00089 * 194.80932 * 12 10 7 14 14 Si 1.86803 * 119.99769 * 14.80959 * 12 10 7 15 15 H 1.48497 * 109.47152 * 180.02562 * 14 12 10 16 16 H 1.48495 * 109.46860 * 59.99751 * 14 12 10 17 17 H 1.48508 * 109.46999 * 300.00271 * 14 12 10 18 18 C 1.38113 * 120.43492 * 0.28087 * 6 5 4 19 19 C 1.39356 * 119.99475 * 359.45180 * 18 6 5 20 20 C 1.47690 * 120.21651 * 180.27403 * 19 18 6 21 21 O 1.21478 * 119.99799 * 180.26637 * 20 19 18 22 22 O 1.34722 * 120.00120 * 0.26792 * 20 19 18 23 23 H 1.08001 * 120.00482 * 359.97438 * 4 3 2 24 24 H 1.08000 * 119.77999 * 180.02562 * 5 4 3 25 25 H 1.00897 * 111.00482 * 179.09744 * 9 7 6 26 26 H 1.00901 * 110.99654 * 303.05537 * 9 7 6 27 27 H 0.96994 * 120.00282 * 354.89757 * 13 12 10 28 28 H 1.08000 * 120.00231 * 179.72132 * 18 6 5 29 29 H 0.96693 * 117.00149 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2695 -0.4518 1.1157 5 6 4.6507 -0.4487 1.1110 6 6 5.3472 0.0015 0.0024 7 6 6.8541 -0.0021 0.0129 8 1 7.2247 0.0345 -1.0115 9 7 7.3364 -1.2272 0.6645 10 6 7.3541 1.2004 0.7712 11 1 6.6544 1.8479 1.2790 12 6 8.7047 1.4740 0.8170 13 7 9.1725 2.3309 1.6982 14 14 9.8699 0.6277 -0.3727 15 1 11.2581 1.0901 -0.1192 16 1 9.4830 0.9623 -1.7668 17 1 9.7949 -0.8426 -0.1775 18 6 4.6700 0.4588 -1.1110 19 6 3.2766 0.4584 -1.1279 20 6 2.5475 0.9406 -2.3183 21 8 1.3327 0.9431 -2.3268 22 8 3.2296 1.3779 -3.3947 23 1 2.7333 -0.8042 1.9845 24 1 5.1909 -0.8006 1.9775 25 1 8.3448 -1.2604 0.6711 26 1 6.9658 -1.3093 1.5994 27 1 8.5609 2.8255 2.2658 28 1 5.2204 0.8126 -1.9703 29 1 2.7089 1.6834 -4.1500 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309540951.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:56 Heat of formation + Delta-G solvation = -59.432710 kcal Electronic energy + Delta-G solvation = -16795.485959 eV Core-core repulsion = 13875.562706 eV Total energy + Delta-G solvation = -2919.923253 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.69434 -40.11888 -37.92629 -37.04269 -36.47555 -33.99644 -32.57906 -31.70436 -27.97559 -26.19546 -24.77265 -23.20579 -21.63977 -19.97290 -19.77781 -19.10867 -17.76242 -17.29677 -16.82874 -16.33280 -15.72672 -15.42754 -15.09251 -14.93447 -14.84882 -14.32645 -14.27286 -14.12293 -13.76941 -13.36289 -13.13854 -12.78097 -12.66796 -12.44467 -11.95084 -11.80289 -11.67020 -11.29278 -10.58279 -10.15926 -9.92957 -9.39635 -8.60593 -6.43524 -0.68379 0.04976 1.42627 1.51663 1.59393 1.62259 1.76163 1.92053 1.94021 2.48823 2.75891 2.83321 3.08543 3.64224 3.87615 3.99714 4.25692 4.35063 4.39910 4.53964 4.80064 4.93232 5.12186 5.19929 5.45360 5.54753 5.71844 5.80120 6.01526 6.42773 6.45712 6.58080 6.86548 6.88903 7.38466 8.63527 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.030419 B = 0.006396 C = 0.005772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.265474 B = 4376.354553 C = 4849.992737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C 0.276 3.724 3 C 0.001 3.999 4 C -0.061 4.061 5 C -0.075 4.075 6 C -0.026 4.026 7 C 0.209 3.791 8 H 0.055 0.945 9 N -0.845 5.845 10 C -0.621 4.621 11 H 0.023 0.977 12 C -0.016 4.016 13 N -0.933 5.933 14 Si 1.082 2.918 15 H -0.297 1.297 16 H -0.264 1.264 17 H -0.235 1.235 18 C -0.059 4.059 19 C -0.095 4.095 20 C 0.533 3.467 21 O -0.540 6.540 22 O -0.495 6.495 23 H 0.170 0.830 24 H 0.149 0.851 25 H 0.333 0.667 26 H 0.334 0.666 27 H 0.254 0.746 28 H 0.153 0.847 29 H 0.435 0.565 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.839 -6.354 -6.010 10.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.121 5.121 2 C -0.038 4.038 3 C -0.003 4.003 4 C -0.081 4.081 5 C -0.093 4.093 6 C -0.028 4.028 7 C 0.099 3.901 8 H 0.072 0.928 9 N -0.377 5.377 10 C -0.661 4.661 11 H 0.042 0.958 12 C -0.215 4.215 13 N -0.568 5.568 14 Si 0.904 3.096 15 H -0.224 1.224 16 H -0.188 1.188 17 H -0.159 1.159 18 C -0.078 4.078 19 C -0.098 4.098 20 C 0.378 3.622 21 O -0.432 6.432 22 O -0.309 6.309 23 H 0.188 0.812 24 H 0.167 0.833 25 H 0.148 0.852 26 H 0.146 0.854 27 H 0.063 0.937 28 H 0.170 0.830 29 H 0.298 0.702 Dipole moment (debyes) X Y Z Total from point charges -6.484 -7.028 -6.696 11.673 hybrid contribution -1.104 1.808 0.853 2.284 sum -7.587 -5.219 -5.843 10.906 Atomic orbital electron populations 1.81103 1.12986 1.08974 1.09067 1.25484 0.92582 0.93281 0.92459 1.15847 0.83718 1.04967 0.95754 1.21343 0.93657 0.96487 0.96607 1.21342 0.93286 0.96301 0.98407 1.20323 0.96682 0.92718 0.93039 1.18290 0.88005 0.87854 0.95927 0.92764 1.59807 1.14327 1.38774 1.24812 1.22770 0.94156 1.13457 1.35718 0.95840 1.27179 0.99513 0.97255 0.97600 1.70985 1.38168 1.27525 1.20154 0.83555 0.73761 0.77434 0.74864 1.22410 1.18844 1.15915 1.21324 0.91448 0.95940 0.99094 1.18927 0.93514 1.05581 0.91796 1.20783 0.84821 0.73325 0.83266 1.90928 1.16075 1.53628 1.82598 1.84545 1.44626 1.75150 1.26554 0.81217 0.83344 0.85192 0.85356 0.93694 0.82977 0.70220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -15.69 18.41 19.00 0.35 -15.34 15 2 C 0.28 8.72 12.76 88.33 1.13 9.85 15 3 C 0.00 0.02 5.76 -21.13 -0.12 -0.10 15 4 C -0.06 -1.45 9.74 22.51 0.22 -1.24 15 5 C -0.08 -2.08 9.25 22.29 0.21 -1.87 15 6 C -0.03 -0.86 4.90 -19.85 -0.10 -0.95 15 7 C 0.21 8.00 2.48 43.42 0.11 8.11 15 8 H 0.05 2.07 6.70 -2.39 -0.02 2.05 15 9 N -0.85 -29.15 9.09 -174.96 -1.59 -30.74 15 10 C -0.62 -29.95 9.03 25.60 0.23 -29.72 15 11 H 0.02 1.27 7.99 -2.91 -0.02 1.25 15 12 C -0.02 -0.79 5.41 84.66 0.46 -0.34 15 13 N -0.93 -53.19 13.70 21.45 0.29 -52.90 15 14 Si 1.08 43.13 26.43 68.60 1.81 44.95 15 15 H -0.30 -12.56 7.11 99.48 0.71 -11.85 15 16 H -0.26 -9.78 7.11 99.48 0.71 -9.08 15 17 H -0.23 -7.91 5.62 99.48 0.56 -7.35 15 18 C -0.06 -1.77 9.22 22.51 0.21 -1.56 15 19 C -0.09 -2.71 5.90 -19.87 -0.12 -2.83 15 20 C 0.53 14.77 8.25 70.32 0.58 15.35 15 21 O -0.54 -17.99 15.12 19.91 0.30 -17.69 15 22 O -0.50 -10.14 12.68 -56.32 -0.71 -10.85 15 23 H 0.17 2.93 8.06 -2.91 -0.02 2.90 15 24 H 0.15 3.77 6.58 -2.91 -0.02 3.75 15 25 H 0.33 11.80 5.47 -89.70 -0.49 11.31 15 26 H 0.33 10.70 7.20 -89.69 -0.65 10.05 15 27 H 0.25 14.81 8.73 -92.71 -0.81 14.00 15 28 H 0.15 4.23 7.58 -2.91 -0.02 4.21 15 29 H 0.44 4.52 9.11 -74.06 -0.67 3.85 15 Total: -1.00 -65.28 265.37 2.50 -62.78 By element: Atomic # 1 Polarization: 25.85 SS G_CDS: -0.75 Total: 25.10 kcal Atomic # 6 Polarization: -8.10 SS G_CDS: 2.80 Total: -5.30 kcal Atomic # 7 Polarization: -98.03 SS G_CDS: -0.95 Total: -98.98 kcal Atomic # 8 Polarization: -28.13 SS G_CDS: -0.41 Total: -28.54 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 1.81 Total: 44.95 kcal Total: -65.28 2.50 -62.78 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309540951.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.345 kcal (2) G-P(sol) polarization free energy of solvation -65.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds