Wall clock time and date at job start Mon Mar 30 2020 03:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39684 * 120.11172 * 260.27863 * 3 2 1 5 5 C 1.37975 * 119.99243 * 179.75057 * 4 3 2 6 6 C 1.38251 * 120.23529 * 0.54566 * 5 4 3 7 7 C 1.38990 * 120.22703 * 359.70927 * 6 5 4 8 8 N 1.39707 * 119.99598 * 180.02562 * 7 6 5 9 9 C 1.46500 * 120.00252 * 359.97025 * 8 7 6 10 10 C 1.50699 * 109.47431 * 180.02562 * 9 8 7 11 11 O 1.21217 * 119.99988 * 0.02562 * 10 9 8 12 12 O 1.34307 * 120.00340 * 180.02562 * 10 9 8 13 13 C 1.34920 * 117.00603 * 180.02562 * 12 10 9 14 14 H 1.07999 * 119.99308 * 359.97438 * 13 12 10 15 15 C 1.38751 * 120.00645 * 180.02562 * 13 12 10 16 16 N 1.31445 * 119.99432 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00393 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.47100 * 59.99808 * 17 15 13 19 19 H 1.48501 * 109.47251 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47122 * 299.99800 * 17 15 13 21 21 C 1.38659 * 120.00299 * 0.02562 * 7 6 5 22 22 H 1.08001 * 120.00210 * 0.02562 * 4 3 2 23 23 H 1.07999 * 119.88045 * 180.25511 * 5 4 3 24 24 H 1.07998 * 119.88594 * 179.72474 * 6 5 4 25 25 H 0.97004 * 119.99915 * 179.97438 * 8 7 6 26 26 H 1.08999 * 109.46968 * 300.00428 * 9 8 7 27 27 H 1.09004 * 109.47007 * 60.00311 * 9 8 7 28 28 H 0.97005 * 119.99502 * 180.02562 * 16 15 13 29 29 H 1.08006 * 120.11350 * 180.02562 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2687 0.2050 1.1910 5 6 4.6484 0.2000 1.1890 6 6 5.3422 0.0044 0.0093 7 6 4.6546 -0.1945 -1.1821 8 7 5.3606 -0.3922 -2.3713 9 6 6.8255 -0.3891 -2.3628 10 6 7.3366 -0.6213 -3.7613 11 8 6.5546 -0.7737 -4.6748 12 8 8.6585 -0.6593 -3.9956 13 6 9.0491 -0.8704 -5.2697 14 1 8.3101 -1.0000 -6.0464 15 6 10.4001 -0.9218 -5.5818 16 7 11.2994 -0.7645 -4.6362 17 14 10.9408 -1.2147 -7.3457 18 1 10.4136 -0.1296 -8.2117 19 1 12.4242 -1.2249 -7.4135 20 1 10.4143 -2.5218 -7.8142 21 6 3.2680 -0.1968 -1.1903 22 1 2.7304 0.3625 2.1140 23 1 5.1883 0.3541 2.1116 24 1 6.4222 0.0060 0.0136 25 1 4.8807 -0.5314 -3.2028 26 1 7.1847 0.5740 -2.0003 27 1 7.1867 -1.1817 -1.7073 28 1 12.2439 -0.8001 -4.8545 29 1 2.7319 -0.3517 -2.1151 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309577930.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:53 Heat of formation + Delta-G solvation = -21.225652 kcal Electronic energy + Delta-G solvation = -15958.373300 eV Core-core repulsion = 13040.106829 eV Total energy + Delta-G solvation = -2918.266471 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.82357 -39.08006 -36.83137 -35.82148 -34.68561 -32.29736 -31.38044 -30.18578 -27.07588 -25.13935 -23.80244 -22.24350 -20.38933 -18.76056 -17.89950 -17.24462 -16.33095 -15.92875 -15.39734 -15.29899 -14.56930 -14.42835 -14.19280 -13.92380 -13.67773 -13.44813 -13.18841 -12.78890 -12.30274 -12.27539 -11.72447 -11.66854 -11.29320 -11.27457 -10.58267 -10.54764 -10.17564 -9.98344 -9.30652 -9.06740 -8.70824 -7.49676 -6.54329 -4.23150 0.73041 1.42953 2.53149 2.91718 3.01247 3.08242 3.14607 3.27520 3.33065 3.81069 3.85882 3.93417 4.42155 4.76894 4.99323 5.01449 5.08301 5.31637 5.45233 5.56105 5.64528 5.75050 6.07527 6.22331 6.33862 6.36376 6.61709 7.21993 7.28605 7.36039 7.76691 7.80430 8.49909 8.93837 9.63860 10.62780 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.056450 B = 0.003764 C = 0.003536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 495.894790 B = 7436.754676 C = 7917.504068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C 0.262 3.738 3 C 0.014 3.986 4 C -0.138 4.138 5 C -0.069 4.069 6 C -0.173 4.173 7 C 0.227 3.773 8 N -0.728 5.728 9 C 0.140 3.860 10 C 0.388 3.612 11 O -0.555 6.555 12 O -0.206 6.206 13 C -0.385 4.385 14 H 0.097 0.903 15 C 0.045 3.955 16 N -0.861 5.861 17 Si 0.947 3.053 18 H -0.269 1.269 19 H -0.278 1.278 20 H -0.269 1.269 21 C -0.151 4.151 22 H 0.126 0.874 23 H 0.131 0.869 24 H 0.132 0.868 25 H 0.413 0.587 26 H 0.093 0.907 27 H 0.093 0.907 28 H 0.272 0.728 29 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.910 1.685 10.159 12.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.103 5.103 2 C -0.053 4.053 3 C 0.010 3.990 4 C -0.161 4.161 5 C -0.088 4.088 6 C -0.197 4.197 7 C 0.122 3.878 8 N -0.360 5.360 9 C 0.014 3.986 10 C 0.234 3.766 11 O -0.453 6.453 12 O -0.112 6.112 13 C -0.461 4.461 14 H 0.115 0.885 15 C -0.161 4.161 16 N -0.497 5.497 17 Si 0.771 3.229 18 H -0.194 1.194 19 H -0.203 1.203 20 H -0.194 1.194 21 C -0.176 4.176 22 H 0.144 0.856 23 H 0.149 0.851 24 H 0.150 0.850 25 H 0.252 0.748 26 H 0.111 0.889 27 H 0.111 0.889 28 H 0.082 0.918 29 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -9.359 1.644 9.915 13.733 hybrid contribution 0.618 -0.199 -1.191 1.357 sum -8.740 1.445 8.724 12.434 Atomic orbital electron populations 1.81227 1.12214 1.09046 1.07823 1.25813 0.92771 0.93426 0.93302 1.15638 0.83709 1.04856 0.94751 1.20840 0.94296 1.04658 0.96322 1.20804 0.93284 0.97001 0.97736 1.20998 1.00615 1.06715 0.91329 1.17579 0.90347 0.93161 0.86742 1.44570 1.04798 1.78475 1.08127 1.20439 0.80535 1.03591 0.94040 1.22895 0.83402 0.79920 0.90392 1.90555 1.57367 1.51386 1.46001 1.83837 1.21017 1.73710 1.32617 1.21195 0.92073 1.51034 0.81815 0.88540 1.25367 0.94433 0.95982 1.00270 1.69978 1.01613 1.45230 1.32868 0.85698 0.77657 0.79452 0.80118 1.19403 1.20251 1.19399 1.20504 0.92116 1.07436 0.97549 0.85645 0.85083 0.84992 0.74822 0.88908 0.88902 0.91796 0.85197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -5.93 18.54 41.83 0.78 -5.16 15 2 C 0.26 3.10 15.33 -22.47 -0.34 2.76 15 3 C 0.01 0.15 5.73 -106.96 -0.61 -0.46 15 4 C -0.14 -1.22 9.75 -39.14 -0.38 -1.60 15 5 C -0.07 -0.59 10.02 -39.67 -0.40 -0.98 15 6 C -0.17 -1.77 9.31 -39.30 -0.37 -2.13 15 7 C 0.23 2.70 6.65 -83.84 -0.56 2.14 15 8 N -0.73 -10.26 5.70 -59.84 -0.34 -10.60 15 9 C 0.14 2.19 5.50 -5.19 -0.03 2.16 15 10 C 0.39 8.65 7.97 36.00 0.29 8.94 15 11 O -0.56 -13.60 14.90 -19.06 -0.28 -13.88 15 12 O -0.21 -5.49 9.75 -20.69 -0.20 -5.69 15 13 C -0.39 -10.83 9.65 30.92 0.30 -10.53 15 14 H 0.10 2.73 6.86 -52.49 -0.36 2.37 15 15 C 0.04 1.20 5.49 -17.53 -0.10 1.10 15 16 N -0.86 -24.05 13.67 55.48 0.76 -23.29 15 17 Si 0.95 20.41 29.55 -169.99 -5.02 15.39 15 18 H -0.27 -5.69 7.11 56.52 0.40 -5.29 15 19 H -0.28 -5.74 7.11 56.52 0.40 -5.34 15 20 H -0.27 -5.69 7.11 56.52 0.40 -5.29 15 21 C -0.15 -1.66 9.60 -38.96 -0.37 -2.04 15 22 H 0.13 0.88 8.06 -52.49 -0.42 0.45 15 23 H 0.13 0.78 8.06 -52.49 -0.42 0.35 15 24 H 0.13 1.23 6.71 -52.49 -0.35 0.88 15 25 H 0.41 6.22 7.45 -40.82 -0.30 5.92 15 26 H 0.09 1.29 7.94 -51.93 -0.41 0.88 15 27 H 0.09 1.29 7.94 -51.93 -0.41 0.88 15 28 H 0.27 6.98 8.31 -40.82 -0.34 6.64 15 29 H 0.13 1.35 8.06 -52.48 -0.42 0.92 15 LS Contribution 277.81 15.07 4.19 4.19 Total: -1.00 -31.37 277.81 -4.95 -36.31 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: -2.24 Total: 3.39 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: -2.57 Total: -0.65 kcal Atomic # 7 Polarization: -40.25 SS G_CDS: 1.19 Total: -39.05 kcal Atomic # 8 Polarization: -19.09 SS G_CDS: -0.49 Total: -19.57 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -31.37 -4.95 -36.31 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309577930.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.088 kcal (2) G-P(sol) polarization free energy of solvation -31.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds