Wall clock time and date at job start Mon Mar 30 2020 03:51:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39684 * 120.11172 * 260.27863 * 3 2 1 5 5 C 1.37975 * 119.99243 * 179.75057 * 4 3 2 6 6 C 1.38251 * 120.23529 * 0.54566 * 5 4 3 7 7 C 1.38990 * 120.22703 * 359.70927 * 6 5 4 8 8 N 1.39707 * 119.99598 * 180.02562 * 7 6 5 9 9 C 1.46500 * 120.00252 * 359.97025 * 8 7 6 10 10 C 1.50699 * 109.47431 * 180.02562 * 9 8 7 11 11 O 1.21217 * 119.99988 * 0.02562 * 10 9 8 12 12 O 1.34307 * 120.00340 * 180.02562 * 10 9 8 13 13 C 1.34920 * 117.00603 * 180.02562 * 12 10 9 14 14 H 1.07999 * 119.99308 * 359.97438 * 13 12 10 15 15 C 1.38751 * 120.00645 * 180.02562 * 13 12 10 16 16 N 1.31445 * 119.99432 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00393 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.47100 * 59.99808 * 17 15 13 19 19 H 1.48501 * 109.47251 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47122 * 299.99800 * 17 15 13 21 21 C 1.38659 * 120.00299 * 0.02562 * 7 6 5 22 22 H 1.08001 * 120.00210 * 0.02562 * 4 3 2 23 23 H 1.07999 * 119.88045 * 180.25511 * 5 4 3 24 24 H 1.07998 * 119.88594 * 179.72474 * 6 5 4 25 25 H 0.97004 * 119.99915 * 179.97438 * 8 7 6 26 26 H 1.08999 * 109.46968 * 300.00428 * 9 8 7 27 27 H 1.09004 * 109.47007 * 60.00311 * 9 8 7 28 28 H 0.97005 * 119.99502 * 180.02562 * 16 15 13 29 29 H 1.08006 * 120.11350 * 180.02562 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2687 0.2050 1.1910 5 6 4.6484 0.2000 1.1890 6 6 5.3422 0.0044 0.0093 7 6 4.6546 -0.1945 -1.1821 8 7 5.3606 -0.3922 -2.3713 9 6 6.8255 -0.3891 -2.3628 10 6 7.3366 -0.6213 -3.7613 11 8 6.5546 -0.7737 -4.6748 12 8 8.6585 -0.6593 -3.9956 13 6 9.0491 -0.8704 -5.2697 14 1 8.3101 -1.0000 -6.0464 15 6 10.4001 -0.9218 -5.5818 16 7 11.2994 -0.7645 -4.6362 17 14 10.9408 -1.2147 -7.3457 18 1 10.4136 -0.1296 -8.2117 19 1 12.4242 -1.2249 -7.4135 20 1 10.4143 -2.5218 -7.8142 21 6 3.2680 -0.1968 -1.1903 22 1 2.7304 0.3625 2.1140 23 1 5.1883 0.3541 2.1116 24 1 6.4222 0.0060 0.0136 25 1 4.8807 -0.5314 -3.2028 26 1 7.1847 0.5740 -2.0003 27 1 7.1867 -1.1817 -1.7073 28 1 12.2439 -0.8001 -4.8545 29 1 2.7319 -0.3517 -2.1151 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309577930.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:52 Heat of formation + Delta-G solvation = -40.902392 kcal Electronic energy + Delta-G solvation = -15959.226547 eV Core-core repulsion = 13040.106829 eV Total energy + Delta-G solvation = -2919.119718 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.20977 -40.39903 -37.95853 -37.37027 -35.98276 -34.32337 -32.18557 -31.26753 -28.43739 -26.86315 -24.77579 -23.08623 -22.04825 -19.96074 -19.64337 -18.72908 -17.47446 -17.09600 -17.04063 -16.43022 -16.06649 -15.95944 -15.23607 -15.06906 -14.72842 -14.62057 -14.19036 -13.95923 -13.72607 -13.57227 -13.37268 -12.98914 -12.46725 -12.39122 -12.17157 -12.11024 -12.02271 -11.16914 -11.11907 -10.70803 -9.86197 -8.55329 -8.43947 -6.35231 -0.09936 0.65016 1.28377 1.35424 1.50424 1.58598 1.60528 1.95808 2.02378 2.30968 2.83049 2.96672 2.96816 3.04118 4.02098 4.24980 4.31540 4.33677 4.41096 4.49443 4.59458 4.74534 4.98587 5.14835 5.27863 5.46405 5.58906 5.78931 5.80540 6.27128 6.43844 6.59840 6.68002 6.90150 7.68870 8.64283 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.056450 B = 0.003764 C = 0.003536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 495.894790 B = 7436.754676 C = 7917.504068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C 0.283 3.717 3 C 0.004 3.996 4 C -0.123 4.123 5 C -0.062 4.062 6 C -0.171 4.171 7 C 0.208 3.792 8 N -0.740 5.740 9 C 0.156 3.844 10 C 0.389 3.611 11 O -0.580 6.580 12 O -0.236 6.236 13 C -0.422 4.422 14 H 0.082 0.918 15 C 0.000 4.000 16 N -0.897 5.897 17 Si 1.015 2.985 18 H -0.263 1.263 19 H -0.260 1.260 20 H -0.263 1.263 21 C -0.154 4.154 22 H 0.150 0.850 23 H 0.165 0.835 24 H 0.143 0.857 25 H 0.405 0.595 26 H 0.116 0.884 27 H 0.116 0.884 28 H 0.280 0.720 29 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.550 1.907 11.485 13.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.144 5.144 2 C -0.032 4.032 3 C 0.000 4.000 4 C -0.145 4.145 5 C -0.081 4.081 6 C -0.194 4.194 7 C 0.105 3.895 8 N -0.372 5.372 9 C 0.031 3.969 10 C 0.237 3.763 11 O -0.478 6.478 12 O -0.143 6.143 13 C -0.497 4.497 14 H 0.100 0.900 15 C -0.202 4.202 16 N -0.534 5.534 17 Si 0.834 3.166 18 H -0.188 1.188 19 H -0.184 1.184 20 H -0.188 1.188 21 C -0.180 4.180 22 H 0.167 0.833 23 H 0.183 0.817 24 H 0.161 0.839 25 H 0.242 0.758 26 H 0.133 0.867 27 H 0.133 0.867 28 H 0.089 0.911 29 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -9.031 1.875 11.290 14.579 hybrid contribution 0.383 -0.244 -1.458 1.527 sum -8.648 1.631 9.832 13.195 Atomic orbital electron populations 1.81247 1.13376 1.10679 1.09111 1.25982 0.92869 0.92208 0.92122 1.15692 0.82872 1.06114 0.95322 1.21195 0.94702 1.02209 0.96427 1.21167 0.93097 0.95479 0.98342 1.21278 1.01370 1.05583 0.91197 1.17697 0.90494 0.94831 0.86501 1.44477 1.03850 1.80197 1.08710 1.20460 0.81527 1.05444 0.89481 1.24223 0.82019 0.77221 0.92830 1.90529 1.57649 1.51782 1.47848 1.83856 1.23260 1.75163 1.32055 1.21346 0.92704 1.53254 0.82427 0.89982 1.26473 0.93857 0.94889 1.04933 1.70050 1.02210 1.45993 1.35136 0.84710 0.77986 0.79519 0.74341 1.18778 1.18417 1.18771 1.20517 0.92075 1.07474 0.97904 0.83261 0.81710 0.83913 0.75768 0.86676 0.86666 0.91080 0.85435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -12.75 18.54 19.00 0.35 -12.40 15 2 C 0.28 6.37 15.33 88.33 1.35 7.73 15 3 C 0.00 0.08 5.73 -21.38 -0.12 -0.05 15 4 C -0.12 -1.73 9.75 22.56 0.22 -1.51 15 5 C -0.06 -0.80 10.02 22.21 0.22 -0.57 15 6 C -0.17 -2.96 9.31 22.45 0.21 -2.75 15 7 C 0.21 4.59 6.65 38.17 0.25 4.84 15 8 N -0.74 -20.26 5.70 -343.25 -1.96 -22.22 15 9 C 0.16 4.71 5.50 85.63 0.47 5.18 15 10 C 0.39 17.60 7.97 71.24 0.57 18.17 15 11 O -0.58 -29.10 14.90 20.75 0.31 -28.79 15 12 O -0.24 -12.88 9.75 14.91 0.15 -12.73 15 13 C -0.42 -24.32 9.65 67.94 0.66 -23.67 15 14 H 0.08 4.82 6.86 -2.91 -0.02 4.80 15 15 C 0.00 -0.02 5.49 84.87 0.47 0.45 15 16 N -0.90 -50.52 13.67 21.62 0.30 -50.22 15 17 Si 1.02 41.65 29.55 68.60 2.03 43.68 15 18 H -0.26 -10.46 7.11 99.48 0.71 -9.75 15 19 H -0.26 -9.85 7.11 99.48 0.71 -9.14 15 20 H -0.26 -10.45 7.11 99.48 0.71 -9.75 15 21 C -0.15 -3.24 9.60 22.67 0.22 -3.02 15 22 H 0.15 1.43 8.06 -2.91 -0.02 1.41 15 23 H 0.17 1.06 8.06 -2.91 -0.02 1.03 15 24 H 0.14 2.16 6.71 -2.91 -0.02 2.14 15 25 H 0.41 12.33 7.45 -92.71 -0.69 11.64 15 26 H 0.12 2.98 7.94 -2.39 -0.02 2.96 15 27 H 0.12 2.98 7.94 -2.38 -0.02 2.96 15 28 H 0.28 14.33 8.31 -92.70 -0.77 13.56 15 29 H 0.13 2.65 8.06 -2.91 -0.02 2.63 15 Total: -1.00 -69.58 277.81 6.20 -63.38 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: 0.51 Total: 14.50 kcal Atomic # 6 Polarization: 0.28 SS G_CDS: 4.51 Total: 4.80 kcal Atomic # 7 Polarization: -83.53 SS G_CDS: -1.31 Total: -84.84 kcal Atomic # 8 Polarization: -41.97 SS G_CDS: 0.45 Total: -41.52 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 2.03 Total: 43.68 kcal Total: -69.58 6.20 -63.38 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309577930.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.480 kcal (2) G-P(sol) polarization free energy of solvation -69.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds