Wall clock time and date at job start Mon Mar 30 2020 03:46:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31451 * 1 3 3 Si 1.86801 * 119.99812 * 2 1 4 4 H 1.48494 * 109.47060 * 270.00194 * 3 2 1 5 5 H 1.48506 * 109.46797 * 29.99885 * 3 2 1 6 6 H 1.48493 * 109.47382 * 149.99877 * 3 2 1 7 7 C 1.38752 * 120.00538 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99798 * 0.02562 * 7 2 1 9 9 O 1.34882 * 120.00525 * 179.97438 * 7 2 1 10 10 C 1.34858 * 117.00283 * 180.02562 * 9 7 2 11 11 O 1.21622 * 120.00308 * 359.97438 * 10 9 7 12 12 C 1.46697 * 120.00072 * 180.02562 * 10 9 7 13 13 C 1.36477 * 126.77107 * 359.97438 * 12 10 9 14 14 N 1.35537 * 109.74800 * 180.02562 * 13 12 10 15 15 H 0.96997 * 124.78428 * 179.97438 * 14 13 12 16 16 C 1.37971 * 110.42994 * 0.02562 * 14 13 12 17 17 C 1.39076 * 133.16761 * 180.02562 * 16 14 13 18 18 C 1.38439 * 119.73414 * 179.69995 * 17 16 14 19 19 N 1.39781 * 119.77299 * 180.29407 * 18 17 16 20 20 C 1.39351 * 120.46078 * 0.55501 * 18 17 16 21 21 C 1.36682 * 120.36505 * 359.46036 * 20 18 17 22 22 C 1.39282 * 119.88676 * 0.25382 * 21 20 18 23 23 H 0.96995 * 120.00248 * 0.02562 * 1 2 3 24 24 H 1.07998 * 125.12883 * 0.03609 * 13 12 10 25 25 H 1.08003 * 120.13173 * 359.97438 * 17 16 14 26 26 H 0.96992 * 120.00661 * 180.26271 * 19 18 17 27 27 H 0.97006 * 119.99911 * 0.25460 * 19 18 17 28 28 H 1.08002 * 119.82013 * 179.74367 * 20 18 17 29 29 H 1.08002 * 120.05038 * 180.24082 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3145 0.0000 0.0000 3 14 2.2485 1.6178 0.0000 4 1 2.4959 2.0465 -1.4000 5 1 1.4458 2.6527 0.7001 6 1 3.5460 1.4403 0.7000 7 6 2.0084 -1.2016 0.0005 8 1 1.4684 -2.1369 0.0005 9 8 3.3572 -1.2016 0.0000 10 6 3.9695 -2.4031 0.0000 11 8 3.3072 -3.4232 0.0010 12 6 5.4345 -2.4798 0.0001 13 6 6.3075 -1.4308 -0.0004 14 7 7.5810 -1.8949 -0.0008 15 1 8.3736 -1.3358 -0.0015 16 6 7.5908 -3.2745 -0.0011 17 6 8.6119 -4.2187 -0.0011 18 6 8.3000 -5.5675 0.0048 19 7 9.3256 -6.5172 0.0110 20 6 6.9705 -5.9851 -0.0010 21 6 5.9579 -5.0670 -0.0014 22 6 6.2548 -3.7062 -0.0014 23 1 -0.4850 0.8400 -0.0004 24 1 6.0261 -0.3882 -0.0004 25 1 9.6442 -3.9010 -0.0012 26 1 9.1109 -7.4630 0.0113 27 1 10.2523 -6.2302 0.0150 28 1 6.7389 -7.0400 -0.0005 29 1 4.9293 -5.3964 -0.0019 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309591174.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:52 Heat of formation + Delta-G solvation = -17.828016 kcal Electronic energy + Delta-G solvation = -16714.587326 eV Core-core repulsion = 13796.468188 eV Total energy + Delta-G solvation = -2918.119138 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.06802 -38.71197 -37.56388 -35.11425 -33.56915 -32.22199 -31.23619 -29.37241 -27.44267 -25.41377 -22.83969 -22.47385 -21.26188 -19.09761 -18.10735 -17.84172 -16.73760 -16.23412 -15.96996 -15.35326 -14.77283 -14.63561 -13.97278 -13.78251 -13.62800 -13.34611 -13.01565 -12.40520 -12.38590 -11.92256 -11.58275 -11.22057 -10.86904 -10.46133 -10.34695 -10.13503 -9.61148 -9.05818 -9.05153 -8.59693 -7.84234 -7.05751 -6.28781 -4.00521 1.33059 1.87386 2.44417 3.16222 3.25052 3.27864 3.38923 3.89848 3.96466 4.29161 4.35557 4.41165 4.97524 5.14818 5.23517 5.26012 5.52476 5.63862 5.76076 5.84782 6.15044 6.36943 6.61246 6.71758 6.79484 7.05388 7.13602 7.51437 7.63528 7.73593 7.86702 8.14350 8.78327 9.10660 9.83891 10.80202 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.046138 B = 0.005559 C = 0.004970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.733712 B = 5035.975025 C = 5632.861456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.062 3.938 3 Si 0.905 3.095 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.261 1.261 7 C -0.371 4.371 8 H 0.110 0.890 9 O -0.254 6.254 10 C 0.484 3.516 11 O -0.539 6.539 12 C -0.170 4.170 13 C 0.092 3.908 14 N -0.586 5.586 15 H 0.415 0.585 16 C 0.133 3.867 17 C -0.223 4.223 18 C 0.230 3.770 19 N -0.881 5.881 20 C -0.209 4.209 21 C -0.013 4.013 22 C -0.112 4.112 23 H 0.278 0.722 24 H 0.182 0.818 25 H 0.115 0.885 26 H 0.397 0.603 27 H 0.394 0.606 28 H 0.121 0.879 29 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.281 -5.752 0.021 21.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.200 1.200 5 H -0.209 1.209 6 H -0.185 1.185 7 C -0.447 4.447 8 H 0.127 0.873 9 O -0.163 6.163 10 C 0.332 3.668 11 O -0.435 6.435 12 C -0.179 4.179 13 C -0.038 4.038 14 N -0.189 5.189 15 H 0.252 0.748 16 C 0.026 3.974 17 C -0.250 4.250 18 C 0.125 3.875 19 N -0.421 5.421 20 C -0.231 4.231 21 C -0.032 4.032 22 C -0.117 4.117 23 H 0.088 0.912 24 H 0.199 0.801 25 H 0.133 0.867 26 H 0.225 0.775 27 H 0.222 0.778 28 H 0.139 0.861 29 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 19.917 -5.768 0.026 20.736 hybrid contribution 0.832 0.859 -0.012 1.196 sum 20.750 -4.909 0.014 21.323 Atomic orbital electron populations 1.69611 1.05660 1.28207 1.48274 1.24530 0.95003 0.98546 0.96009 0.86219 0.80282 0.81680 0.78734 1.19965 1.20911 1.18484 1.20656 0.76292 0.96938 1.50789 0.87282 1.83567 1.23780 1.31057 1.77915 1.19519 0.86519 0.82510 0.78299 1.90659 1.66455 1.36077 1.50270 1.19353 0.90367 0.92032 1.16133 1.22188 0.82052 0.99442 1.00070 1.41471 1.07767 1.05011 1.64625 0.74811 1.17815 0.94617 0.82906 1.02093 1.19042 0.96695 0.89856 1.19364 1.17271 0.88349 0.88211 0.93626 1.42378 1.06433 1.07128 1.86135 1.20197 0.90591 0.99510 1.12834 1.20289 0.99764 0.90480 0.92643 1.18579 0.90702 0.92706 1.09687 0.91172 0.80086 0.86673 0.77510 0.77845 0.86134 0.84654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.40 13.96 55.48 0.77 -25.62 15 2 C 0.06 1.80 5.49 -17.52 -0.10 1.70 15 3 Si 0.91 21.45 28.62 -169.99 -4.86 16.58 15 4 H -0.27 -6.32 7.11 56.52 0.40 -5.92 15 5 H -0.28 -6.51 7.11 56.52 0.40 -6.10 15 6 H -0.26 -5.91 7.11 56.52 0.40 -5.51 15 7 C -0.37 -11.28 10.11 30.92 0.31 -10.96 15 8 H 0.11 3.65 7.09 -52.49 -0.37 3.28 15 9 O -0.25 -6.91 8.40 -22.06 -0.19 -7.10 15 10 C 0.48 12.37 7.87 34.15 0.27 12.64 15 11 O -0.54 -15.22 15.39 -19.36 -0.30 -15.52 15 12 C -0.17 -3.49 6.27 -103.32 -0.65 -4.13 15 13 C 0.09 1.47 11.63 -16.55 -0.19 1.27 15 14 N -0.59 -7.53 5.99 -10.45 -0.06 -7.59 15 15 H 0.42 3.55 8.96 -40.82 -0.37 3.19 15 16 C 0.13 1.99 7.25 -83.98 -0.61 1.38 15 17 C -0.22 -2.80 9.91 -39.20 -0.39 -3.18 15 18 C 0.23 2.79 6.74 -83.75 -0.56 2.22 15 19 N -0.88 -7.12 9.09 32.43 0.29 -6.82 15 20 C -0.21 -2.86 9.82 -39.73 -0.39 -3.25 15 21 C -0.01 -0.22 9.79 -39.76 -0.39 -0.61 15 22 C -0.11 -2.05 6.27 -104.90 -0.66 -2.71 15 23 H 0.28 7.63 8.31 -40.82 -0.34 7.29 15 24 H 0.18 2.52 8.06 -52.49 -0.42 2.09 15 25 H 0.12 1.13 8.06 -52.48 -0.42 0.71 15 26 H 0.40 2.51 8.84 -40.82 -0.36 2.15 15 27 H 0.39 2.39 8.83 -40.82 -0.36 2.03 15 28 H 0.12 1.35 8.06 -52.49 -0.42 0.93 15 29 H 0.14 2.48 7.43 -52.49 -0.39 2.09 15 LS Contribution 267.56 15.07 4.03 4.03 Total: -1.00 -35.51 267.56 -5.92 -41.43 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -2.25 Total: 6.23 kcal Atomic # 6 Polarization: -2.27 SS G_CDS: -3.35 Total: -5.63 kcal Atomic # 7 Polarization: -41.05 SS G_CDS: 1.01 Total: -40.04 kcal Atomic # 8 Polarization: -22.13 SS G_CDS: -0.48 Total: -22.61 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.86 Total: 16.58 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -35.51 -5.92 -41.43 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309591174.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.601 kcal (2) G-P(sol) polarization free energy of solvation -35.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds