Wall clock time and date at job start Mon Mar 30 2020 03:46:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31451 * 1 3 3 Si 1.86801 * 119.99812 * 2 1 4 4 H 1.48494 * 109.47060 * 270.00194 * 3 2 1 5 5 H 1.48506 * 109.46797 * 29.99885 * 3 2 1 6 6 H 1.48493 * 109.47382 * 149.99877 * 3 2 1 7 7 C 1.38752 * 120.00538 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99798 * 0.02562 * 7 2 1 9 9 O 1.34882 * 120.00525 * 179.97438 * 7 2 1 10 10 C 1.34858 * 117.00283 * 180.02562 * 9 7 2 11 11 O 1.21622 * 120.00308 * 359.97438 * 10 9 7 12 12 C 1.46697 * 120.00072 * 180.02562 * 10 9 7 13 13 C 1.36477 * 126.77107 * 359.97438 * 12 10 9 14 14 N 1.35537 * 109.74800 * 180.02562 * 13 12 10 15 15 H 0.96997 * 124.78428 * 179.97438 * 14 13 12 16 16 C 1.37971 * 110.42994 * 0.02562 * 14 13 12 17 17 C 1.39076 * 133.16761 * 180.02562 * 16 14 13 18 18 C 1.38439 * 119.73414 * 179.69995 * 17 16 14 19 19 N 1.39781 * 119.77299 * 180.29407 * 18 17 16 20 20 C 1.39351 * 120.46078 * 0.55501 * 18 17 16 21 21 C 1.36682 * 120.36505 * 359.46036 * 20 18 17 22 22 C 1.39282 * 119.88676 * 0.25382 * 21 20 18 23 23 H 0.96995 * 120.00248 * 0.02562 * 1 2 3 24 24 H 1.07998 * 125.12883 * 0.03609 * 13 12 10 25 25 H 1.08003 * 120.13173 * 359.97438 * 17 16 14 26 26 H 0.96992 * 120.00661 * 180.26271 * 19 18 17 27 27 H 0.97006 * 119.99911 * 0.25460 * 19 18 17 28 28 H 1.08002 * 119.82013 * 179.74367 * 20 18 17 29 29 H 1.08002 * 120.05038 * 180.24082 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3145 0.0000 0.0000 3 14 2.2485 1.6178 0.0000 4 1 2.4959 2.0465 -1.4000 5 1 1.4458 2.6527 0.7001 6 1 3.5460 1.4403 0.7000 7 6 2.0084 -1.2016 0.0005 8 1 1.4684 -2.1369 0.0005 9 8 3.3572 -1.2016 0.0000 10 6 3.9695 -2.4031 0.0000 11 8 3.3072 -3.4232 0.0010 12 6 5.4345 -2.4798 0.0001 13 6 6.3075 -1.4308 -0.0004 14 7 7.5810 -1.8949 -0.0008 15 1 8.3736 -1.3358 -0.0015 16 6 7.5908 -3.2745 -0.0011 17 6 8.6119 -4.2187 -0.0011 18 6 8.3000 -5.5675 0.0048 19 7 9.3256 -6.5172 0.0110 20 6 6.9705 -5.9851 -0.0010 21 6 5.9579 -5.0670 -0.0014 22 6 6.2548 -3.7062 -0.0014 23 1 -0.4850 0.8400 -0.0004 24 1 6.0261 -0.3882 -0.0004 25 1 9.6442 -3.9010 -0.0012 26 1 9.1109 -7.4630 0.0113 27 1 10.2523 -6.2302 0.0150 28 1 6.7389 -7.0400 -0.0005 29 1 4.9293 -5.3964 -0.0019 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309591174.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:52 Heat of formation + Delta-G solvation = -44.770632 kcal Electronic energy + Delta-G solvation = -16715.755645 eV Core-core repulsion = 13796.468188 eV Total energy + Delta-G solvation = -2919.287458 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.30692 -40.71298 -38.63082 -37.21409 -34.58144 -34.44212 -32.51268 -30.57382 -28.68981 -27.40229 -24.22155 -23.97091 -22.35853 -20.81129 -20.08171 -19.27575 -18.05153 -17.55703 -17.24306 -16.64473 -16.58111 -16.27128 -15.58693 -15.36405 -14.83977 -14.61911 -14.35637 -14.21688 -13.86397 -13.43151 -13.20091 -12.82926 -12.37005 -12.23528 -12.03421 -11.79016 -11.26450 -11.09903 -10.78848 -10.23533 -9.03177 -8.49851 -8.09381 -6.34648 0.07088 0.73362 1.00777 1.36234 1.44926 1.58923 2.04200 2.32219 2.33337 2.60319 2.95011 3.08586 3.14603 3.83101 3.97549 4.15342 4.33348 4.55754 4.59735 4.71327 4.90365 5.06292 5.30136 5.47681 5.51827 5.59706 5.76223 5.96295 6.02510 6.58839 6.62919 6.71327 6.87072 7.12745 7.68731 8.63705 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.046138 B = 0.005559 C = 0.004970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.733712 B = 5035.975025 C = 5632.861456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.009 3.991 3 Si 0.989 3.011 4 H -0.258 1.258 5 H -0.268 1.268 6 H -0.240 1.240 7 C -0.405 4.405 8 H 0.050 0.950 9 O -0.253 6.253 10 C 0.484 3.516 11 O -0.585 6.585 12 C -0.240 4.240 13 C 0.142 3.858 14 N -0.557 5.557 15 H 0.442 0.558 16 C 0.132 3.868 17 C -0.211 4.211 18 C 0.235 3.765 19 N -0.861 5.861 20 C -0.198 4.198 21 C -0.052 4.052 22 C -0.147 4.147 23 H 0.289 0.711 24 H 0.210 0.790 25 H 0.156 0.844 26 H 0.408 0.592 27 H 0.409 0.591 28 H 0.141 0.859 29 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.383 -4.132 0.037 25.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.189 4.189 3 Si 0.807 3.193 4 H -0.183 1.183 5 H -0.193 1.193 6 H -0.163 1.163 7 C -0.481 4.481 8 H 0.068 0.932 9 O -0.163 6.163 10 C 0.334 3.666 11 O -0.483 6.483 12 C -0.248 4.248 13 C 0.008 3.992 14 N -0.161 5.161 15 H 0.284 0.716 16 C 0.026 3.974 17 C -0.238 4.238 18 C 0.128 3.872 19 N -0.401 5.401 20 C -0.220 4.220 21 C -0.072 4.072 22 C -0.152 4.152 23 H 0.098 0.902 24 H 0.227 0.773 25 H 0.173 0.827 26 H 0.238 0.762 27 H 0.240 0.760 28 H 0.159 0.841 29 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 25.104 -4.206 0.043 25.454 hybrid contribution -0.602 0.108 -0.020 0.612 sum 24.502 -4.098 0.023 24.843 Atomic orbital electron populations 1.69724 1.07769 1.30180 1.48637 1.25675 0.96068 1.02975 0.94223 0.85014 0.79358 0.75019 0.79898 1.18256 1.19257 1.16297 1.20305 0.77879 0.95701 1.54180 0.93162 1.83552 1.21734 1.31791 1.79212 1.20640 0.88778 0.81421 0.75742 1.90617 1.68111 1.37370 1.52180 1.19169 0.87592 0.95212 1.22851 1.22446 0.82329 0.99406 0.94994 1.41385 1.07701 1.04668 1.62341 0.71567 1.17942 0.93492 0.83907 1.02092 1.19425 0.97883 0.89276 1.17223 1.17319 0.88384 0.89133 0.92408 1.42321 1.06325 1.07125 1.84369 1.20391 0.90879 0.99891 1.10832 1.20186 0.99243 0.91437 0.96291 1.18806 0.92283 0.92594 1.11507 0.90168 0.77295 0.82666 0.76212 0.76028 0.84128 0.88153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.76 13.96 21.63 0.30 -57.46 15 2 C 0.01 0.56 5.49 84.87 0.47 1.02 15 3 Si 0.99 43.82 28.62 68.60 1.96 45.78 15 4 H -0.26 -10.75 7.11 99.48 0.71 -10.04 15 5 H -0.27 -11.11 7.11 99.48 0.71 -10.41 15 6 H -0.24 -9.75 7.11 99.48 0.71 -9.05 15 7 C -0.40 -26.29 10.11 67.94 0.69 -25.60 15 8 H 0.05 3.75 7.09 -2.91 -0.02 3.72 15 9 O -0.25 -14.38 8.40 9.77 0.08 -14.30 15 10 C 0.48 26.44 7.87 70.03 0.55 26.99 15 11 O -0.59 -36.49 15.39 19.44 0.30 -36.19 15 12 C -0.24 -10.00 6.27 -19.02 -0.12 -10.12 15 13 C 0.14 4.15 11.63 83.71 0.97 5.12 15 14 N -0.56 -11.98 5.99 -186.98 -1.12 -13.10 15 15 H 0.44 4.99 8.96 -92.71 -0.83 4.16 15 16 C 0.13 3.57 7.25 38.90 0.28 3.86 15 17 C -0.21 -4.35 9.91 22.52 0.22 -4.12 15 18 C 0.23 4.86 6.74 38.19 0.26 5.12 15 19 N -0.86 -9.91 9.09 -51.32 -0.47 -10.38 15 20 C -0.20 -5.22 9.82 22.17 0.22 -5.01 15 21 C -0.05 -1.88 9.79 22.16 0.22 -1.67 15 22 C -0.15 -5.49 6.27 -20.04 -0.13 -5.61 15 23 H 0.29 16.19 8.31 -92.71 -0.77 15.42 15 24 H 0.21 4.92 8.06 -2.91 -0.02 4.90 15 25 H 0.16 1.98 8.06 -2.91 -0.02 1.96 15 26 H 0.41 3.42 8.84 -92.71 -0.82 2.60 15 27 H 0.41 2.71 8.83 -92.70 -0.82 1.89 15 28 H 0.14 2.99 8.06 -2.91 -0.02 2.96 15 29 H 0.10 4.19 7.43 -2.91 -0.02 4.17 15 Total: -1.00 -86.84 267.56 3.46 -83.38 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: -1.23 Total: 12.29 kcal Atomic # 6 Polarization: -13.65 SS G_CDS: 3.63 Total: -10.02 kcal Atomic # 7 Polarization: -79.66 SS G_CDS: -1.28 Total: -80.94 kcal Atomic # 8 Polarization: -50.87 SS G_CDS: 0.38 Total: -50.49 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 1.96 Total: 45.78 kcal Total: -86.84 3.46 -83.38 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309591174.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.612 kcal (2) G-P(sol) polarization free energy of solvation -86.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds