Wall clock time and date at job start Mon Mar 30 2020 03:51:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86797 * 119.99888 * 2 1 4 4 H 1.48504 * 109.47011 * 239.99708 * 3 2 1 5 5 H 1.48496 * 109.47466 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46807 * 120.00214 * 3 2 1 7 7 C 1.39938 * 119.99968 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99742 * 184.43069 * 7 2 1 9 9 C 1.41408 * 120.00161 * 4.43142 * 7 2 1 10 10 C 1.40775 * 120.21129 * 325.23614 * 9 7 2 11 11 C 1.37632 * 119.87370 * 180.02562 * 10 9 7 12 12 C 1.38541 * 120.32099 * 359.97438 * 11 10 9 13 13 C 1.39205 * 120.43148 * 359.79062 * 12 11 10 14 14 N 1.40214 * 119.94445 * 180.23305 * 13 12 11 15 15 C 1.34768 * 124.17930 * 186.18427 * 14 13 12 16 16 O 1.21231 * 127.15423 * 0.02562 * 15 14 13 17 17 C 1.51579 * 105.68323 * 179.97438 * 15 14 13 18 18 N 1.47314 * 103.59630 * 0.32164 * 17 15 14 19 19 C 1.33793 * 124.17202 * 6.49083 * 14 13 12 20 20 O 1.21531 * 123.77493 * 359.95825 * 19 14 13 21 21 C 1.38237 * 120.11409 * 0.46617 * 13 12 11 22 22 H 0.96992 * 119.99859 * 359.97438 * 1 2 3 23 23 H 1.07996 * 120.06017 * 0.04430 * 10 9 7 24 24 H 1.08006 * 119.84139 * 180.02562 * 11 10 9 25 25 H 1.08000 * 119.78605 * 180.02562 * 12 11 10 26 26 H 1.08998 * 110.76632 * 241.71677 * 17 15 14 27 27 H 1.08998 * 110.56751 * 118.83449 * 17 15 14 28 28 H 0.97001 * 126.69157 * 179.84506 * 18 17 15 29 29 H 1.07997 * 120.15737 * 179.79599 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0961 1.6964 -1.2125 5 1 1.2773 2.7465 0.0006 6 1 3.0961 1.6963 1.2125 7 6 2.0080 -1.2119 -0.0005 8 1 3.0855 -1.2133 0.0717 9 6 1.3042 -2.4347 -0.0957 10 6 0.0409 -2.5739 0.5098 11 6 -0.6378 -3.7673 0.4133 12 6 -0.0842 -4.8329 -0.2776 13 6 1.1619 -4.7080 -0.8855 14 7 1.7105 -5.7915 -1.5863 15 6 2.9549 -5.8068 -2.1034 16 8 3.7801 -4.9201 -2.0520 17 6 3.1085 -7.1636 -2.7615 18 7 1.8083 -7.8135 -2.5227 19 6 1.0610 -6.9357 -1.8293 20 8 -0.0774 -7.1567 -1.4656 21 6 1.8616 -3.5192 -0.7953 22 1 -0.4849 0.8400 0.0004 23 1 -0.3948 -1.7457 1.0488 24 1 -1.6071 -3.8734 0.8777 25 1 -0.6245 -5.7653 -0.3483 26 1 3.9127 -7.7313 -2.2935 27 1 3.2910 -7.0523 -3.8304 28 1 1.5432 -8.7018 -2.8085 29 1 2.8299 -3.4227 -1.2638 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313451067.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:43 Heat of formation + Delta-G solvation = -8.086872 kcal Electronic energy + Delta-G solvation = -17251.826622 eV Core-core repulsion = 14334.129891 eV Total energy + Delta-G solvation = -2917.696731 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.27518 -38.40433 -37.51992 -35.91055 -34.55453 -33.03256 -29.82830 -28.75073 -27.50886 -25.34408 -22.94800 -22.52389 -20.34156 -19.87056 -18.03116 -17.20464 -16.98660 -16.07256 -15.46944 -15.16200 -15.03290 -14.58455 -14.00646 -13.99003 -13.53799 -13.12109 -12.88935 -12.19481 -11.83060 -11.26495 -11.24581 -11.13736 -10.99079 -10.54835 -9.98677 -9.83901 -9.54988 -9.49592 -9.20320 -8.97561 -7.44600 -7.04731 -6.58737 -4.39057 1.79286 2.47894 2.58389 2.82618 3.11318 3.14092 3.21917 3.26374 3.57879 4.00334 4.10995 4.72462 4.88023 4.93929 5.45731 5.62781 5.92863 6.31649 6.56222 6.74682 6.85591 7.03442 7.04459 7.29595 7.39979 7.53870 7.67341 7.93690 8.04580 8.07023 8.22321 8.42518 8.66065 8.93578 8.95178 10.32293 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.034788 B = 0.006702 C = 0.005722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.681325 B = 4177.040823 C = 4891.902163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.071 3.929 3 Si 0.917 3.083 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.462 4.462 8 H 0.077 0.923 9 C 0.114 3.886 10 C -0.150 4.150 11 C -0.102 4.102 12 C -0.235 4.235 13 C 0.127 3.873 14 N -0.507 5.507 15 C 0.511 3.489 16 O -0.453 6.453 17 C 0.064 3.936 18 N -0.735 5.735 19 C 0.699 3.301 20 O -0.530 6.530 21 C -0.223 4.223 22 H 0.278 0.722 23 H 0.132 0.868 24 H 0.097 0.903 25 H 0.131 0.869 26 H 0.121 0.879 27 H 0.120 0.880 28 H 0.438 0.562 29 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.480 -10.690 -4.738 12.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C -0.144 4.144 3 Si 0.742 3.258 4 H -0.191 1.191 5 H -0.205 1.205 6 H -0.190 1.190 7 C -0.493 4.493 8 H 0.095 0.905 9 C 0.111 3.889 10 C -0.170 4.170 11 C -0.121 4.121 12 C -0.255 4.255 13 C 0.038 3.962 14 N -0.244 5.244 15 C 0.298 3.702 16 O -0.323 6.323 17 C -0.064 4.064 18 N -0.401 5.401 19 C 0.400 3.600 20 O -0.404 6.404 21 C -0.244 4.244 22 H 0.089 0.911 23 H 0.150 0.850 24 H 0.115 0.885 25 H 0.148 0.852 26 H 0.138 0.862 27 H 0.138 0.862 28 H 0.282 0.718 29 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 4.120 -10.066 -4.478 11.762 hybrid contribution 0.238 0.322 -0.317 0.511 sum 4.357 -9.744 -4.795 11.701 Atomic orbital electron populations 1.69740 1.07275 1.28834 1.38186 1.25856 0.94934 1.01117 0.92480 0.86232 0.79764 0.80032 0.79803 1.19080 1.20451 1.19035 1.19447 0.94725 0.89896 1.45267 0.90525 1.17478 0.92039 0.91300 0.88078 1.21769 0.97175 0.96308 1.01738 1.20683 0.98398 0.93620 0.99414 1.20971 0.96178 1.01237 1.07154 1.17584 0.95410 0.84967 0.98194 1.43752 1.15329 1.15532 1.49827 1.20854 0.81469 0.89266 0.78627 1.90768 1.45068 1.40905 1.55529 1.22451 0.88219 0.91974 1.03714 1.45440 1.15001 1.19089 1.60553 1.15899 0.84516 0.80370 0.79180 1.90887 1.15575 1.78279 1.55619 1.21455 1.02893 0.92676 1.07360 0.91068 0.85047 0.88481 0.85193 0.86165 0.86194 0.71822 0.85581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.45 10.60 55.55 0.59 -20.87 15 2 C 0.07 1.83 5.42 -17.34 -0.09 1.74 15 3 Si 0.92 19.35 29.56 -169.99 -5.03 14.33 15 4 H -0.27 -5.60 7.11 56.52 0.40 -5.20 15 5 H -0.28 -5.73 7.11 56.52 0.40 -5.33 15 6 H -0.27 -5.50 7.11 56.52 0.40 -5.10 15 7 C -0.46 -12.63 9.04 -37.74 -0.34 -12.97 15 8 H 0.08 2.03 7.85 -52.49 -0.41 1.61 15 9 C 0.11 3.13 5.55 -106.85 -0.59 2.54 15 10 C -0.15 -3.99 8.67 -38.84 -0.34 -4.33 15 11 C -0.10 -2.49 10.02 -39.69 -0.40 -2.89 15 12 C -0.23 -5.66 9.26 -39.11 -0.36 -6.02 15 13 C 0.13 3.02 6.55 -83.66 -0.55 2.47 15 14 N -0.51 -9.82 2.83 -64.40 -0.18 -10.00 15 15 C 0.51 8.39 8.18 -10.56 -0.09 8.30 15 16 O -0.45 -8.83 15.05 5.60 0.08 -8.75 15 17 C 0.06 0.60 7.97 -4.32 -0.03 0.57 15 18 N -0.73 -7.89 6.58 -65.74 -0.43 -8.32 15 19 C 0.70 11.94 8.54 -88.01 -0.75 11.19 15 20 O -0.53 -10.72 14.65 5.34 0.08 -10.64 15 21 C -0.22 -5.76 9.06 -38.70 -0.35 -6.11 15 22 H 0.28 6.74 8.30 -40.82 -0.34 6.40 15 23 H 0.13 3.58 6.13 -52.49 -0.32 3.26 15 24 H 0.10 2.10 8.06 -52.48 -0.42 1.68 15 25 H 0.13 3.06 5.16 -52.49 -0.27 2.79 15 26 H 0.12 0.76 8.14 -51.93 -0.42 0.34 15 27 H 0.12 0.78 8.14 -51.93 -0.42 0.36 15 28 H 0.44 3.18 8.96 -40.82 -0.37 2.81 15 29 H 0.13 3.25 5.35 -52.49 -0.28 2.97 15 LS Contribution 254.95 15.07 3.84 3.84 Total: -1.00 -32.32 254.95 -7.00 -39.32 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -2.05 Total: 6.60 kcal Atomic # 6 Polarization: -1.61 SS G_CDS: -3.90 Total: -5.51 kcal Atomic # 7 Polarization: -39.16 SS G_CDS: -0.03 Total: -39.19 kcal Atomic # 8 Polarization: -19.55 SS G_CDS: 0.16 Total: -19.39 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -5.03 Total: 14.33 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -32.32 -7.00 -39.32 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313451067.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.230 kcal (2) G-P(sol) polarization free energy of solvation -32.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds