Wall clock time and date at job start Mon Mar 30 2020 03:51:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86797 * 119.99888 * 2 1 4 4 H 1.48504 * 109.47011 * 239.99708 * 3 2 1 5 5 H 1.48496 * 109.47466 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46807 * 120.00214 * 3 2 1 7 7 C 1.39938 * 119.99968 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99742 * 184.43069 * 7 2 1 9 9 C 1.41408 * 120.00161 * 4.43142 * 7 2 1 10 10 C 1.40775 * 120.21129 * 325.23614 * 9 7 2 11 11 C 1.37632 * 119.87370 * 180.02562 * 10 9 7 12 12 C 1.38541 * 120.32099 * 359.97438 * 11 10 9 13 13 C 1.39205 * 120.43148 * 359.79062 * 12 11 10 14 14 N 1.40214 * 119.94445 * 180.23305 * 13 12 11 15 15 C 1.34768 * 124.17930 * 186.18427 * 14 13 12 16 16 O 1.21231 * 127.15423 * 0.02562 * 15 14 13 17 17 C 1.51579 * 105.68323 * 179.97438 * 15 14 13 18 18 N 1.47314 * 103.59630 * 0.32164 * 17 15 14 19 19 C 1.33793 * 124.17202 * 6.49083 * 14 13 12 20 20 O 1.21531 * 123.77493 * 359.95825 * 19 14 13 21 21 C 1.38237 * 120.11409 * 0.46617 * 13 12 11 22 22 H 0.96992 * 119.99859 * 359.97438 * 1 2 3 23 23 H 1.07996 * 120.06017 * 0.04430 * 10 9 7 24 24 H 1.08006 * 119.84139 * 180.02562 * 11 10 9 25 25 H 1.08000 * 119.78605 * 180.02562 * 12 11 10 26 26 H 1.08998 * 110.76632 * 241.71677 * 17 15 14 27 27 H 1.08998 * 110.56751 * 118.83449 * 17 15 14 28 28 H 0.97001 * 126.69157 * 179.84506 * 18 17 15 29 29 H 1.07997 * 120.15737 * 179.79599 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0961 1.6964 -1.2125 5 1 1.2773 2.7465 0.0006 6 1 3.0961 1.6963 1.2125 7 6 2.0080 -1.2119 -0.0005 8 1 3.0855 -1.2133 0.0717 9 6 1.3042 -2.4347 -0.0957 10 6 0.0409 -2.5739 0.5098 11 6 -0.6378 -3.7673 0.4133 12 6 -0.0842 -4.8329 -0.2776 13 6 1.1619 -4.7080 -0.8855 14 7 1.7105 -5.7915 -1.5863 15 6 2.9549 -5.8068 -2.1034 16 8 3.7801 -4.9201 -2.0520 17 6 3.1085 -7.1636 -2.7615 18 7 1.8083 -7.8135 -2.5227 19 6 1.0610 -6.9357 -1.8293 20 8 -0.0774 -7.1567 -1.4656 21 6 1.8616 -3.5192 -0.7953 22 1 -0.4849 0.8400 0.0004 23 1 -0.3948 -1.7457 1.0488 24 1 -1.6071 -3.8734 0.8777 25 1 -0.6245 -5.7653 -0.3483 26 1 3.9127 -7.7313 -2.2935 27 1 3.2910 -7.0523 -3.8304 28 1 1.5432 -8.7018 -2.8085 29 1 2.8299 -3.4227 -1.2638 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313451067.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:42 Heat of formation + Delta-G solvation = -31.374410 kcal Electronic energy + Delta-G solvation = -17252.836445 eV Core-core repulsion = 14334.129891 eV Total energy + Delta-G solvation = -2918.706554 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.59731 -39.78823 -39.35650 -37.25390 -36.17915 -34.78630 -31.81239 -30.48000 -28.60226 -27.31912 -24.43902 -24.09782 -22.12667 -21.47410 -19.58626 -18.66666 -18.22968 -17.59283 -17.20345 -16.82045 -16.53958 -16.19810 -15.31504 -15.21795 -15.05769 -14.67258 -14.53170 -14.04817 -13.66400 -13.07231 -12.97357 -12.91424 -12.71631 -12.20945 -11.73309 -11.61414 -11.28351 -11.05245 -10.71932 -10.48180 -9.44221 -8.95459 -8.53079 -6.45773 0.49974 0.81391 0.89538 1.19346 1.38556 1.49157 1.52107 2.07531 2.23120 2.28056 2.77271 2.99647 3.60057 3.95246 4.29784 4.31955 4.44310 4.52084 4.73962 5.02036 5.04528 5.12002 5.31390 5.54408 5.66879 5.88982 6.06030 6.06252 6.17724 6.29710 6.45378 6.62900 6.91180 6.92945 7.12082 8.39468 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.034788 B = 0.006702 C = 0.005722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.681325 B = 4177.040823 C = 4891.902163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.839 5.839 2 C 0.030 3.970 3 Si 0.991 3.009 4 H -0.264 1.264 5 H -0.266 1.266 6 H -0.258 1.258 7 C -0.499 4.499 8 H 0.072 0.928 9 C 0.087 3.913 10 C -0.174 4.174 11 C -0.100 4.100 12 C -0.242 4.242 13 C 0.135 3.865 14 N -0.526 5.526 15 C 0.496 3.504 16 O -0.493 6.493 17 C 0.087 3.913 18 N -0.699 5.699 19 C 0.692 3.308 20 O -0.569 6.569 21 C -0.243 4.243 22 H 0.286 0.714 23 H 0.119 0.881 24 H 0.122 0.878 25 H 0.140 0.860 26 H 0.169 0.831 27 H 0.167 0.833 28 H 0.459 0.541 29 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.574 -12.122 -6.029 14.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C -0.182 4.182 3 Si 0.811 3.189 4 H -0.188 1.188 5 H -0.190 1.190 6 H -0.182 1.182 7 C -0.529 4.529 8 H 0.090 0.910 9 C 0.084 3.916 10 C -0.194 4.194 11 C -0.118 4.118 12 C -0.263 4.263 13 C 0.045 3.955 14 N -0.263 5.263 15 C 0.287 3.713 16 O -0.365 6.365 17 C -0.039 4.039 18 N -0.366 5.366 19 C 0.393 3.607 20 O -0.446 6.446 21 C -0.264 4.264 22 H 0.097 0.903 23 H 0.137 0.863 24 H 0.140 0.860 25 H 0.157 0.843 26 H 0.186 0.814 27 H 0.184 0.816 28 H 0.308 0.692 29 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 5.238 -11.589 -5.809 13.982 hybrid contribution -0.089 0.634 0.037 0.641 sum 5.149 -10.955 -5.772 13.411 Atomic orbital electron populations 1.69812 1.08646 1.30230 1.37965 1.26766 0.95818 1.04348 0.91307 0.85123 0.78499 0.75321 0.79922 1.18835 1.18976 1.18240 1.19694 0.94765 0.91101 1.47374 0.90978 1.17843 0.92844 0.92189 0.88711 1.21691 0.97645 0.96940 1.03170 1.20963 0.99144 0.92913 0.98819 1.21191 0.96541 1.01411 1.07124 1.17606 0.94906 0.85847 0.97171 1.43975 1.16913 1.15310 1.50096 1.22165 0.79816 0.91545 0.77793 1.90742 1.45752 1.43122 1.56843 1.22749 0.88132 0.87181 1.05812 1.45271 1.14502 1.18787 1.58026 1.16053 0.84401 0.80506 0.79784 1.90845 1.17359 1.78879 1.57496 1.21466 1.03112 0.93579 1.08275 0.90281 0.86344 0.86010 0.84307 0.81390 0.81615 0.69235 0.86142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -45.37 10.60 21.83 0.23 -45.14 15 2 C 0.03 1.58 5.42 85.25 0.46 2.04 15 3 Si 0.99 39.99 29.56 68.60 2.03 42.02 15 4 H -0.26 -10.48 7.11 99.48 0.71 -9.77 15 5 H -0.27 -10.03 7.11 99.48 0.71 -9.32 15 6 H -0.26 -10.04 7.11 99.48 0.71 -9.33 15 7 C -0.50 -28.41 9.04 23.46 0.21 -28.20 15 8 H 0.07 4.00 7.85 -2.91 -0.02 3.98 15 9 C 0.09 5.00 5.55 -21.31 -0.12 4.88 15 10 C -0.17 -9.67 8.67 22.75 0.20 -9.48 15 11 C -0.10 -4.96 10.02 22.20 0.22 -4.74 15 12 C -0.24 -11.84 9.26 22.57 0.21 -11.63 15 13 C 0.14 6.57 6.55 38.03 0.25 6.81 15 14 N -0.53 -19.92 2.83 -594.92 -1.68 -21.61 15 15 C 0.50 15.41 8.18 87.94 0.72 16.13 15 16 O -0.49 -19.09 15.05 -2.88 -0.04 -19.14 15 17 C 0.09 1.18 7.97 85.76 0.68 1.86 15 18 N -0.70 -11.97 6.58 -480.31 -3.16 -15.13 15 19 C 0.69 22.27 8.54 179.44 1.53 23.80 15 20 O -0.57 -22.43 14.65 -3.81 -0.06 -22.48 15 21 C -0.24 -13.09 9.06 22.84 0.21 -12.88 15 22 H 0.29 14.04 8.30 -92.71 -0.77 13.27 15 23 H 0.12 6.77 6.13 -2.91 -0.02 6.75 15 24 H 0.12 5.30 8.06 -2.91 -0.02 5.28 15 25 H 0.14 6.57 5.16 -2.91 -0.02 6.55 15 26 H 0.17 0.99 8.14 -2.39 -0.02 0.97 15 27 H 0.17 1.04 8.14 -2.39 -0.02 1.02 15 28 H 0.46 4.36 8.96 -92.71 -0.83 3.53 15 29 H 0.12 6.52 5.35 -2.91 -0.02 6.50 15 Total: -1.00 -75.74 254.95 2.28 -73.46 By element: Atomic # 1 Polarization: 19.04 SS G_CDS: 0.39 Total: 19.43 kcal Atomic # 6 Polarization: -15.98 SS G_CDS: 4.58 Total: -11.40 kcal Atomic # 7 Polarization: -77.26 SS G_CDS: -4.61 Total: -81.88 kcal Atomic # 8 Polarization: -41.52 SS G_CDS: -0.10 Total: -41.62 kcal Atomic # 14 Polarization: 39.99 SS G_CDS: 2.03 Total: 42.02 kcal Total: -75.74 2.28 -73.46 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313451067.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.086 kcal (2) G-P(sol) polarization free energy of solvation -75.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds