Wall clock time and date at job start Mon Mar 30 2020 03:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.37796 * 125.78748 * 51.12960 * 3 2 1 5 5 C 1.39841 * 106.87924 * 179.73551 * 4 3 2 6 6 C 1.37818 * 106.85989 * 0.41179 * 5 4 3 7 7 C 1.46797 * 125.80492 * 179.84533 * 6 5 4 8 8 O 1.21720 * 120.00395 * 353.78221 * 7 6 5 9 9 N 1.34777 * 119.99833 * 173.78507 * 7 6 5 10 10 C 1.36651 * 120.00315 * 175.15189 * 9 7 6 11 11 H 1.07998 * 120.00006 * 228.04846 * 10 9 7 12 12 C 1.39167 * 119.99691 * 48.04136 * 10 9 7 13 13 N 1.31293 * 120.00103 * 191.64772 * 12 10 9 14 14 Si 1.86798 * 120.00155 * 11.64974 * 12 10 9 15 15 H 1.48500 * 109.47331 * 264.79345 * 14 12 10 16 16 H 1.48498 * 109.47373 * 24.79339 * 14 12 10 17 17 H 1.48504 * 109.47226 * 144.79154 * 14 12 10 18 18 C 1.46507 * 119.99898 * 355.15290 * 9 7 6 19 19 C 1.53002 * 117.49713 * 182.51902 * 18 9 7 20 20 C 1.52997 * 117.49919 * 113.85694 * 18 9 7 21 21 O 1.34569 * 125.78563 * 231.11986 * 3 2 1 22 22 H 1.08007 * 126.56234 * 359.97438 * 4 3 2 23 23 H 1.08000 * 126.57008 * 180.25276 * 5 4 3 24 24 H 0.96996 * 119.99862 * 180.02562 * 13 12 10 25 25 H 1.09003 * 115.54757 * 328.18745 * 18 9 7 26 26 H 1.09004 * 117.49765 * 359.97438 * 19 18 9 27 27 H 1.08993 * 117.49519 * 145.02162 * 19 18 9 28 28 H 1.08998 * 117.49920 * 214.97514 * 20 18 9 29 29 H 1.09002 * 117.49700 * 359.97438 * 20 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3741 -0.7005 -0.8703 5 6 4.6970 -0.4107 -0.5213 6 6 4.6473 0.4490 0.5547 7 6 5.8062 1.0149 1.2559 8 8 6.9304 0.6458 0.9702 9 7 5.6254 1.9432 2.2162 10 6 6.6936 2.3975 2.9372 11 1 6.6351 2.4501 4.0143 12 6 7.8570 2.7923 2.2834 13 7 8.9547 3.0094 2.9704 14 14 7.8570 3.0134 0.4286 15 1 8.3437 1.7684 -0.2183 16 1 6.4768 3.3052 -0.0352 17 1 8.7506 4.1423 0.0646 18 6 4.2836 2.4652 2.4871 19 6 4.1522 3.5595 3.5482 20 6 3.6604 2.1408 3.8462 21 8 3.3546 0.6862 0.8498 22 1 3.0470 -1.3468 -1.6714 23 1 5.5869 -0.7901 -1.0013 24 1 9.7654 3.2849 2.5147 25 1 3.6163 2.5157 1.6266 26 1 5.0641 3.8908 4.0451 27 1 3.3982 4.3297 3.3862 28 1 2.5832 1.9785 3.8801 29 1 4.2487 1.5387 4.5387 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334638330.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:55:06 Heat of formation + Delta-G solvation = 64.684141 kcal Electronic energy + Delta-G solvation = -17497.771487 eV Core-core repulsion = 14583.230344 eV Total energy + Delta-G solvation = -2914.541143 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.55210 -39.11933 -36.72315 -36.64230 -33.36559 -32.97222 -31.75194 -30.15011 -25.96150 -23.66761 -22.06196 -21.77838 -21.43409 -20.01099 -19.15906 -17.99877 -16.49179 -16.34044 -15.35373 -14.90124 -14.30539 -14.06240 -13.86853 -13.54740 -13.41305 -13.32174 -12.97471 -12.88140 -12.66575 -12.40931 -11.56647 -11.32115 -11.03977 -10.45746 -10.31052 -10.08675 -10.05736 -9.85440 -9.03462 -8.84986 -8.41677 -7.72308 -6.41939 -4.26434 0.74474 1.93156 2.07745 2.88327 3.20373 3.29096 3.37103 3.53937 3.79227 3.91450 4.20441 4.35640 4.52555 4.80328 4.87741 5.12871 5.37572 5.48878 5.56286 5.63913 5.75115 5.82051 6.09407 6.23982 6.35173 6.54835 6.76978 6.82959 7.17966 7.56592 7.74608 8.45023 8.53452 9.11054 9.43792 10.60542 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.026732 B = 0.009040 C = 0.007313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.163728 B = 3096.673854 C = 3827.909270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C 0.300 3.700 3 C 0.014 3.986 4 C -0.118 4.118 5 C -0.167 4.167 6 C 0.018 3.982 7 C 0.509 3.491 8 O -0.520 6.520 9 N -0.406 5.406 10 C -0.341 4.341 11 H 0.104 0.896 12 C 0.088 3.912 13 N -0.853 5.853 14 Si 0.923 3.077 15 H -0.252 1.252 16 H -0.281 1.281 17 H -0.306 1.306 18 C 0.053 3.947 19 C -0.166 4.166 20 C -0.190 4.190 21 O -0.135 6.135 22 H 0.164 0.836 23 H 0.168 0.832 24 H 0.278 0.722 25 H 0.118 0.882 26 H 0.115 0.885 27 H 0.090 0.910 28 H 0.089 0.911 29 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.523 -3.085 -4.970 11.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.073 5.073 2 C -0.015 4.015 3 C -0.040 4.040 4 C -0.141 4.141 5 C -0.188 4.188 6 C -0.039 4.039 7 C 0.300 3.700 8 O -0.404 6.404 9 N -0.124 5.124 10 C -0.467 4.467 11 H 0.122 0.878 12 C -0.123 4.123 13 N -0.486 5.486 14 Si 0.754 3.246 15 H -0.178 1.178 16 H -0.207 1.207 17 H -0.236 1.236 18 C -0.051 4.051 19 C -0.203 4.203 20 C -0.229 4.229 21 O -0.028 6.028 22 H 0.182 0.818 23 H 0.186 0.814 24 H 0.088 0.912 25 H 0.135 0.865 26 H 0.133 0.867 27 H 0.109 0.891 28 H 0.107 0.893 29 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -10.581 -2.984 -4.783 11.989 hybrid contribution 0.422 0.088 -0.882 0.982 sum -10.159 -2.896 -5.665 11.987 Atomic orbital electron populations 1.81307 1.10586 1.08128 1.07243 1.23584 0.89650 0.94025 0.94245 1.16908 0.84418 1.04479 0.98147 1.22015 0.91802 1.00427 0.99827 1.22063 0.98089 1.01028 0.97650 1.23661 0.80920 1.00989 0.98283 1.16803 0.85531 0.82213 0.85500 1.90701 1.20833 1.62629 1.66225 1.43044 1.06193 1.31970 1.31155 1.18832 0.90358 1.45331 0.92132 0.87837 1.25497 0.94394 0.91888 1.00505 1.69627 1.00517 1.40534 1.37963 0.86049 0.77852 0.76788 0.83887 1.17773 1.20671 1.23579 1.22055 0.87177 1.02885 0.93018 1.23214 1.03508 0.91334 1.02282 1.23267 0.99927 0.99555 1.00133 1.84386 1.16478 1.54628 1.47356 0.81819 0.81415 0.91183 0.86498 0.86665 0.89140 0.89268 0.88526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.39 -5.64 18.54 41.84 0.78 -4.87 15 2 C 0.30 3.97 15.89 -22.47 -0.36 3.61 15 3 C 0.01 0.20 7.09 -37.82 -0.27 -0.07 15 4 C -0.12 -1.42 10.85 -39.14 -0.42 -1.84 15 5 C -0.17 -2.53 10.65 -39.14 -0.42 -2.94 15 6 C 0.02 0.33 6.81 -36.28 -0.25 0.08 15 7 C 0.51 11.76 5.91 -12.80 -0.08 11.68 15 8 O -0.52 -13.54 12.16 5.17 0.06 -13.47 15 9 N -0.41 -9.43 2.43 -109.17 -0.27 -9.69 15 10 C -0.34 -8.98 8.32 -15.06 -0.13 -9.11 15 11 H 0.10 2.83 7.57 -52.49 -0.40 2.44 15 12 C 0.09 2.45 5.05 -17.44 -0.09 2.36 15 13 N -0.85 -24.40 13.95 55.51 0.77 -23.63 15 14 Si 0.92 23.31 24.48 -169.99 -4.16 19.15 15 15 H -0.25 -6.57 6.39 56.52 0.36 -6.21 15 16 H -0.28 -6.92 7.03 56.52 0.40 -6.52 15 17 H -0.31 -7.54 7.11 56.52 0.40 -7.14 15 18 C 0.05 1.01 5.14 -67.93 -0.35 0.66 15 19 C -0.17 -2.80 9.81 -26.69 -0.26 -3.06 15 20 C -0.19 -3.11 10.37 -26.69 -0.28 -3.39 15 21 O -0.14 -2.20 7.45 3.87 0.03 -2.17 15 22 H 0.16 1.35 8.06 -52.48 -0.42 0.93 15 23 H 0.17 2.35 8.06 -52.49 -0.42 1.93 15 24 H 0.28 7.46 8.31 -40.82 -0.34 7.12 15 25 H 0.12 2.05 6.00 -51.93 -0.31 1.74 15 26 H 0.12 2.17 6.79 -51.93 -0.35 1.82 15 27 H 0.09 1.27 8.14 -51.93 -0.42 0.85 15 28 H 0.09 1.24 8.14 -51.93 -0.42 0.82 15 29 H 0.10 1.69 8.14 -51.93 -0.42 1.26 15 LS Contribution 264.61 15.07 3.99 3.99 Total: -1.00 -29.64 264.61 -4.04 -33.69 By element: Atomic # 1 Polarization: 1.39 SS G_CDS: -2.35 Total: -0.97 kcal Atomic # 6 Polarization: 0.87 SS G_CDS: -2.89 Total: -2.02 kcal Atomic # 7 Polarization: -39.47 SS G_CDS: 1.28 Total: -38.19 kcal Atomic # 8 Polarization: -15.74 SS G_CDS: 0.09 Total: -15.64 kcal Atomic # 14 Polarization: 23.31 SS G_CDS: -4.16 Total: 19.15 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -29.64 -4.04 -33.69 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334638330.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.369 kcal (2) G-P(sol) polarization free energy of solvation -29.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.685 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds