Wall clock time and date at job start Mon Mar 30 2020 03:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.37796 * 125.78748 * 51.12960 * 3 2 1 5 5 C 1.39841 * 106.87924 * 179.73551 * 4 3 2 6 6 C 1.37818 * 106.85989 * 0.41179 * 5 4 3 7 7 C 1.46797 * 125.80492 * 179.84533 * 6 5 4 8 8 O 1.21720 * 120.00395 * 353.78221 * 7 6 5 9 9 N 1.34777 * 119.99833 * 173.78507 * 7 6 5 10 10 C 1.36651 * 120.00315 * 175.15189 * 9 7 6 11 11 H 1.07998 * 120.00006 * 228.04846 * 10 9 7 12 12 C 1.39167 * 119.99691 * 48.04136 * 10 9 7 13 13 N 1.31293 * 120.00103 * 191.64772 * 12 10 9 14 14 Si 1.86798 * 120.00155 * 11.64974 * 12 10 9 15 15 H 1.48500 * 109.47331 * 264.79345 * 14 12 10 16 16 H 1.48498 * 109.47373 * 24.79339 * 14 12 10 17 17 H 1.48504 * 109.47226 * 144.79154 * 14 12 10 18 18 C 1.46507 * 119.99898 * 355.15290 * 9 7 6 19 19 C 1.53002 * 117.49713 * 182.51902 * 18 9 7 20 20 C 1.52997 * 117.49919 * 113.85694 * 18 9 7 21 21 O 1.34569 * 125.78563 * 231.11986 * 3 2 1 22 22 H 1.08007 * 126.56234 * 359.97438 * 4 3 2 23 23 H 1.08000 * 126.57008 * 180.25276 * 5 4 3 24 24 H 0.96996 * 119.99862 * 180.02562 * 13 12 10 25 25 H 1.09003 * 115.54757 * 328.18745 * 18 9 7 26 26 H 1.09004 * 117.49765 * 359.97438 * 19 18 9 27 27 H 1.08993 * 117.49519 * 145.02162 * 19 18 9 28 28 H 1.08998 * 117.49920 * 214.97514 * 20 18 9 29 29 H 1.09002 * 117.49700 * 359.97438 * 20 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3741 -0.7005 -0.8703 5 6 4.6970 -0.4107 -0.5213 6 6 4.6473 0.4490 0.5547 7 6 5.8062 1.0149 1.2559 8 8 6.9304 0.6458 0.9702 9 7 5.6254 1.9432 2.2162 10 6 6.6936 2.3975 2.9372 11 1 6.6351 2.4501 4.0143 12 6 7.8570 2.7923 2.2834 13 7 8.9547 3.0094 2.9704 14 14 7.8570 3.0134 0.4286 15 1 8.3437 1.7684 -0.2183 16 1 6.4768 3.3052 -0.0352 17 1 8.7506 4.1423 0.0646 18 6 4.2836 2.4652 2.4871 19 6 4.1522 3.5595 3.5482 20 6 3.6604 2.1408 3.8462 21 8 3.3546 0.6862 0.8498 22 1 3.0470 -1.3468 -1.6714 23 1 5.5869 -0.7901 -1.0013 24 1 9.7654 3.2849 2.5147 25 1 3.6163 2.5157 1.6266 26 1 5.0641 3.8908 4.0451 27 1 3.3982 4.3297 3.3862 28 1 2.5832 1.9785 3.8801 29 1 4.2487 1.5387 4.5387 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334638330.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:55:06 Heat of formation + Delta-G solvation = 45.701722 kcal Electronic energy + Delta-G solvation = -17498.594626 eV Core-core repulsion = 14583.230344 eV Total energy + Delta-G solvation = -2915.364282 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.79438 -40.83727 -38.25794 -37.82018 -35.11306 -34.27904 -33.56902 -31.48633 -27.70697 -25.16489 -23.39440 -23.03492 -22.92127 -21.59853 -20.39730 -19.66147 -18.12092 -17.70764 -17.19796 -16.43823 -15.75809 -15.59546 -15.35257 -15.17377 -14.67990 -14.54180 -14.49095 -14.26296 -14.06995 -13.57455 -13.32339 -13.03684 -12.55420 -12.24371 -12.16938 -11.79796 -11.40432 -11.12008 -10.86405 -10.79035 -9.77877 -9.46686 -8.48314 -6.33730 -0.49358 0.74728 0.84930 1.30341 1.39265 1.50251 1.76189 2.11144 2.14524 2.36880 2.39796 2.88238 2.90979 3.15103 3.67928 3.74478 4.00848 4.09639 4.23471 4.40559 4.46930 4.80619 4.81352 4.93906 5.16746 5.23998 5.39336 5.56905 5.59919 5.82965 6.11157 6.56738 6.67159 7.13637 7.58793 8.58533 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.026732 B = 0.009040 C = 0.007313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.163728 B = 3096.673854 C = 3827.909270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.404 5.404 2 C 0.317 3.683 3 C 0.033 3.967 4 C -0.093 4.093 5 C -0.141 4.141 6 C -0.027 4.027 7 C 0.515 3.485 8 O -0.560 6.560 9 N -0.427 5.427 10 C -0.339 4.339 11 H 0.078 0.922 12 C 0.045 3.955 13 N -0.901 5.901 14 Si 0.969 3.031 15 H -0.268 1.268 16 H -0.272 1.272 17 H -0.302 1.302 18 C 0.032 3.968 19 C -0.162 4.162 20 C -0.171 4.171 21 O -0.142 6.142 22 H 0.212 0.788 23 H 0.179 0.821 24 H 0.278 0.722 25 H 0.136 0.864 26 H 0.086 0.914 27 H 0.126 0.874 28 H 0.124 0.876 29 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.738 -4.132 -7.036 15.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.083 5.083 2 C 0.002 3.998 3 C -0.021 4.021 4 C -0.115 4.115 5 C -0.162 4.162 6 C -0.082 4.082 7 C 0.306 3.694 8 O -0.446 6.446 9 N -0.145 5.145 10 C -0.466 4.466 11 H 0.095 0.905 12 C -0.161 4.161 13 N -0.537 5.537 14 Si 0.799 3.201 15 H -0.195 1.195 16 H -0.197 1.197 17 H -0.231 1.231 18 C -0.071 4.071 19 C -0.199 4.199 20 C -0.209 4.209 21 O -0.036 6.036 22 H 0.229 0.771 23 H 0.196 0.804 24 H 0.088 0.912 25 H 0.153 0.847 26 H 0.105 0.895 27 H 0.144 0.856 28 H 0.142 0.858 29 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -13.826 -4.016 -6.838 15.939 hybrid contribution 1.150 0.229 -0.290 1.208 sum -12.676 -3.788 -7.127 15.028 Atomic orbital electron populations 1.81359 1.10995 1.08373 1.07560 1.23304 0.89151 0.93558 0.93768 1.17140 0.84422 1.03277 0.97294 1.22460 0.89545 0.99616 0.99877 1.22409 1.00045 0.98229 0.95509 1.22714 0.80716 1.04154 1.00622 1.17334 0.86588 0.81132 0.84351 1.90654 1.23094 1.63484 1.67398 1.43147 1.07029 1.32855 1.31443 1.18602 0.91651 1.44940 0.91410 0.90465 1.26082 0.94486 0.92333 1.03180 1.69701 1.01188 1.43815 1.38968 0.85325 0.78057 0.75904 0.80838 1.19479 1.19689 1.23106 1.22283 0.85459 1.04709 0.94668 1.23250 1.03334 0.92376 1.00926 1.23281 1.01353 0.98624 0.97674 1.84308 1.15753 1.55367 1.48165 0.77063 0.80401 0.91194 0.84694 0.89507 0.85585 0.85797 0.90399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -9.96 18.54 19.00 0.35 -9.61 15 2 C 0.32 6.94 15.89 88.33 1.40 8.34 15 3 C 0.03 0.73 7.09 23.41 0.17 0.90 15 4 C -0.09 -1.71 10.85 22.55 0.24 -1.47 15 5 C -0.14 -3.73 10.65 22.56 0.24 -3.49 15 6 C -0.03 -0.93 6.81 24.41 0.17 -0.76 15 7 C 0.51 23.72 5.91 86.48 0.51 24.23 15 8 O -0.56 -29.61 12.16 -4.41 -0.05 -29.66 15 9 N -0.43 -20.06 2.43 -617.51 -1.50 -21.56 15 10 C -0.34 -18.67 8.32 84.17 0.70 -17.97 15 11 H 0.08 4.53 7.57 -2.91 -0.02 4.50 15 12 C 0.05 2.60 5.05 85.00 0.43 3.03 15 13 N -0.90 -54.19 13.95 21.70 0.30 -53.89 15 14 Si 0.97 49.31 24.48 68.60 1.68 50.99 15 15 H -0.27 -14.17 6.39 99.48 0.64 -13.53 15 16 H -0.27 -13.14 7.03 99.48 0.70 -12.44 15 17 H -0.30 -14.79 7.11 99.48 0.71 -14.08 15 18 C 0.03 1.19 5.14 44.99 0.23 1.42 15 19 C -0.16 -5.30 9.81 30.62 0.30 -4.99 15 20 C -0.17 -5.33 10.37 30.62 0.32 -5.01 15 21 O -0.14 -4.15 7.45 -9.05 -0.07 -4.22 15 22 H 0.21 1.90 8.06 -2.91 -0.02 1.88 15 23 H 0.18 4.36 8.06 -2.91 -0.02 4.34 15 24 H 0.28 15.73 8.31 -92.71 -0.77 14.96 15 25 H 0.14 4.42 6.00 -2.39 -0.01 4.40 15 26 H 0.09 3.38 6.79 -2.39 -0.02 3.36 15 27 H 0.13 3.19 8.14 -2.39 -0.02 3.17 15 28 H 0.12 3.00 8.14 -2.39 -0.02 2.98 15 29 H 0.08 2.72 8.14 -2.39 -0.02 2.71 15 Total: -1.00 -68.02 264.61 6.54 -61.48 By element: Atomic # 1 Polarization: 1.13 SS G_CDS: 1.11 Total: 2.25 kcal Atomic # 6 Polarization: -0.48 SS G_CDS: 4.71 Total: 4.23 kcal Atomic # 7 Polarization: -84.21 SS G_CDS: -0.84 Total: -85.06 kcal Atomic # 8 Polarization: -33.76 SS G_CDS: -0.12 Total: -33.88 kcal Atomic # 14 Polarization: 49.31 SS G_CDS: 1.68 Total: 50.99 kcal Total: -68.02 6.54 -61.48 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334638330.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.183 kcal (2) G-P(sol) polarization free energy of solvation -68.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds