Wall clock time and date at job start Mon Mar 30 2020 03:58:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30020 * 124.84213 * 2 1 4 4 C 1.35838 * 108.86332 * 180.02562 * 3 2 1 5 5 C 1.39860 * 133.61141 * 180.02562 * 4 3 2 6 6 C 1.36265 * 120.04611 * 179.97438 * 5 4 3 7 7 C 1.40159 * 120.40724 * 359.97438 * 6 5 4 8 8 C 1.47507 * 119.93448 * 179.97438 * 7 6 5 9 9 O 1.21622 * 120.00019 * 180.02562 * 8 7 6 10 10 N 1.34775 * 119.99669 * 0.02562 * 8 7 6 11 11 C 1.36885 * 119.99750 * 179.97438 * 10 8 7 12 12 H 1.08002 * 119.99682 * 359.97438 * 11 10 8 13 13 C 1.39031 * 119.99899 * 179.97438 * 11 10 8 14 14 N 1.31368 * 120.00000 * 0.02562 * 13 11 10 15 15 Si 1.86807 * 119.99886 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46998 * 359.97438 * 15 13 11 17 17 H 1.48496 * 109.47045 * 120.00158 * 15 13 11 18 18 H 1.48499 * 109.47249 * 240.00034 * 15 13 11 19 19 C 1.39513 * 120.13369 * 0.02562 * 7 6 5 20 20 C 1.38261 * 119.61365 * 359.97438 * 19 7 6 21 21 O 1.34145 * 124.84237 * 180.02562 * 2 1 3 22 22 H 1.09000 * 109.46824 * 269.99697 * 1 2 3 23 23 H 1.08997 * 109.46997 * 30.00006 * 1 2 3 24 24 H 1.08995 * 109.46761 * 149.99567 * 1 2 3 25 25 H 1.08002 * 119.97831 * 359.94893 * 5 4 3 26 26 H 1.08001 * 119.79817 * 179.71926 * 6 5 4 27 27 H 0.96995 * 120.00547 * 359.97438 * 10 8 7 28 28 H 0.97000 * 119.99832 * 180.02562 * 14 13 11 29 29 H 1.07993 * 120.19137 * 180.02562 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2498 1.0671 0.0000 4 6 3.5557 0.6932 -0.0006 5 6 4.7619 1.4011 -0.0004 6 6 5.9474 0.7292 -0.0006 7 6 5.9685 -0.6722 -0.0005 8 6 7.2577 -1.3890 -0.0013 9 8 7.2775 -2.6050 -0.0017 10 7 8.4138 -0.6962 -0.0016 11 6 9.6102 -1.3613 -0.0019 12 1 9.6277 -2.4412 -0.0014 13 6 10.8028 -0.6467 -0.0027 14 7 10.7815 0.6668 -0.0029 15 14 12.4355 -1.5543 -0.0023 16 1 12.1879 -3.0186 -0.0004 17 1 13.2080 -1.1840 -1.2153 18 1 13.2086 -1.1820 1.2097 19 6 4.7726 -1.3907 -0.0007 20 6 3.5679 -0.7122 -0.0004 21 8 2.2734 -1.1010 -0.0005 22 1 -0.3633 -0.0001 1.0277 23 1 -0.3633 0.8900 -0.5138 24 1 -0.3633 -0.8899 -0.5139 25 1 4.7538 2.4811 -0.0005 26 1 6.8764 1.2799 -0.0050 27 1 8.3981 0.2736 -0.0017 28 1 11.6136 1.1654 -0.0039 29 1 4.7878 -2.4705 -0.0002 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334800837.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:02 Heat of formation + Delta-G solvation = -26.024792 kcal Electronic energy + Delta-G solvation = -16568.579720 eV Core-core repulsion = 13650.105143 eV Total energy + Delta-G solvation = -2918.474577 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -44.35195 -40.68455 -38.48684 -36.22052 -35.88387 -33.58396 -32.50753 -31.83149 -29.49230 -27.00264 -24.58539 -23.94416 -22.72074 -21.51096 -20.19410 -19.21266 -18.54946 -17.96899 -17.12396 -16.98608 -16.08293 -15.59634 -15.51255 -15.21310 -14.82480 -14.58807 -14.12131 -14.03364 -13.59907 -13.49843 -13.25644 -12.98119 -12.69507 -12.42770 -12.24905 -12.11374 -11.63372 -11.62538 -10.64404 -10.17785 -10.01624 -9.53460 -8.60076 -6.03440 -0.67683 0.06597 1.08988 1.34533 1.41567 1.43210 1.57483 1.99215 2.25203 2.64858 2.76842 2.99836 3.22153 3.36661 3.88428 3.94471 3.98982 4.13073 4.24661 4.62471 4.65445 4.71651 4.86563 4.92598 5.12348 5.16622 5.24519 5.32598 5.46831 5.87597 6.43806 6.47950 6.97311 7.35613 7.92364 8.56833 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.063817 B = 0.004628 C = 0.004325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 438.646088 B = 6048.380467 C = 6471.882994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.253 3.747 3 N -0.506 5.506 4 C 0.021 3.979 5 C -0.059 4.059 6 C -0.092 4.092 7 C -0.090 4.090 8 C 0.463 3.537 9 O -0.635 6.635 10 N -0.541 5.541 11 C -0.336 4.336 12 H 0.087 0.913 13 C -0.007 4.007 14 N -0.904 5.904 15 Si 1.001 2.999 16 H -0.272 1.272 17 H -0.267 1.267 18 H -0.267 1.267 19 C -0.053 4.053 20 C -0.012 4.012 21 O -0.219 6.219 22 H 0.121 0.879 23 H 0.122 0.878 24 H 0.114 0.886 25 H 0.168 0.832 26 H 0.151 0.849 27 H 0.401 0.599 28 H 0.285 0.715 29 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.079 3.963 0.017 16.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.043 3.957 3 N -0.236 5.236 4 C -0.092 4.092 5 C -0.077 4.077 6 C -0.113 4.113 7 C -0.094 4.094 8 C 0.253 3.747 9 O -0.525 6.525 10 N -0.175 5.175 11 C -0.465 4.465 12 H 0.105 0.895 13 C -0.209 4.209 14 N -0.542 5.542 15 Si 0.823 3.177 16 H -0.196 1.196 17 H -0.192 1.192 18 H -0.192 1.192 19 C -0.074 4.074 20 C -0.062 4.062 21 O -0.112 6.112 22 H 0.140 0.860 23 H 0.140 0.860 24 H 0.133 0.867 25 H 0.186 0.814 26 H 0.169 0.831 27 H 0.237 0.763 28 H 0.095 0.905 29 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -16.077 3.952 0.016 16.556 hybrid contribution 1.260 -0.740 0.005 1.461 sum -14.817 3.212 0.021 15.161 Atomic orbital electron populations 1.20818 0.76510 1.07391 1.07094 1.27827 0.98497 0.77275 0.92086 1.70604 1.00445 1.29854 1.22708 1.20246 0.93125 0.91135 1.04646 1.20152 0.87305 1.01523 0.98764 1.21095 0.99405 0.92110 0.98642 1.19768 0.92191 0.94278 1.03120 1.18045 0.84215 0.87093 0.85386 1.90572 1.87763 1.15017 1.59195 1.41868 1.04587 1.09727 1.61362 1.19874 0.83362 0.93388 1.49858 0.89548 1.26215 1.02918 0.96484 0.95284 1.69634 1.30681 1.06461 1.47463 0.84758 0.76195 0.78087 0.78625 1.19610 1.19199 1.19214 1.19697 0.86595 1.00583 1.00504 1.20028 0.83905 0.94736 1.07560 1.84479 1.14801 1.37124 1.74800 0.86047 0.86003 0.86716 0.81439 0.83126 0.76306 0.90527 0.84722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.60 10.51 71.24 0.75 0.15 15 2 C 0.25 6.03 8.23 88.38 0.73 6.75 15 3 N -0.51 -14.73 11.33 -296.01 -3.35 -18.08 15 4 C 0.02 0.68 7.24 39.48 0.29 0.96 15 5 C -0.06 -1.78 10.03 22.20 0.22 -1.56 15 6 C -0.09 -3.17 9.46 22.28 0.21 -2.96 15 7 C -0.09 -3.72 5.88 -20.06 -0.12 -3.84 15 8 C 0.46 23.69 7.71 86.69 0.67 24.36 15 9 O -0.64 -37.08 15.90 -4.10 -0.07 -37.14 15 10 N -0.54 -28.21 5.23 -309.92 -1.62 -29.83 15 11 C -0.34 -18.82 9.68 84.09 0.81 -18.01 15 12 H 0.09 5.16 7.15 -2.91 -0.02 5.14 15 13 C -0.01 -0.35 5.50 84.95 0.47 0.12 15 14 N -0.90 -46.69 13.05 21.68 0.28 -46.41 15 15 Si 1.00 41.28 29.55 68.60 2.03 43.31 15 16 H -0.27 -11.40 7.11 99.48 0.71 -10.69 15 17 H -0.27 -10.48 7.11 99.48 0.71 -9.77 15 18 H -0.27 -10.49 7.11 99.48 0.71 -9.78 15 19 C -0.05 -2.07 9.61 22.58 0.22 -1.86 15 20 C -0.01 -0.43 7.42 22.84 0.17 -0.27 15 21 O -0.22 -6.55 10.77 -9.66 -0.10 -6.66 15 22 H 0.12 0.71 8.14 -2.39 -0.02 0.69 15 23 H 0.12 0.83 8.14 -2.39 -0.02 0.81 15 24 H 0.11 0.67 8.14 -2.39 -0.02 0.65 15 25 H 0.17 3.97 8.06 -2.91 -0.02 3.95 15 26 H 0.15 4.84 6.36 -2.91 -0.02 4.82 15 27 H 0.40 19.35 5.89 -92.71 -0.55 18.80 15 28 H 0.28 13.57 8.31 -92.71 -0.77 12.80 15 29 H 0.13 5.39 7.63 -2.91 -0.02 5.37 15 Total: -1.00 -70.40 266.24 2.24 -68.16 By element: Atomic # 1 Polarization: 22.14 SS G_CDS: 0.66 Total: 22.80 kcal Atomic # 6 Polarization: -0.56 SS G_CDS: 4.41 Total: 3.85 kcal Atomic # 7 Polarization: -89.63 SS G_CDS: -4.69 Total: -94.32 kcal Atomic # 8 Polarization: -43.63 SS G_CDS: -0.17 Total: -43.80 kcal Atomic # 14 Polarization: 41.28 SS G_CDS: 2.03 Total: 43.31 kcal Total: -70.40 2.24 -68.16 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334800837.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.134 kcal (2) G-P(sol) polarization free energy of solvation -70.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds