Wall clock time and date at job start Mon Mar 30 2020 04:00:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35929 * 116.99551 * 2 1 4 4 C 1.39207 * 119.82852 * 359.97438 * 3 2 1 5 5 C 1.37879 * 120.62977 * 179.97438 * 4 3 2 6 6 C 1.38815 * 119.76406 * 0.02562 * 5 4 3 7 7 C 1.40699 * 119.75671 * 0.02562 * 6 5 4 8 8 C 1.38360 * 119.81790 * 180.22397 * 3 2 1 9 9 C 1.47408 * 117.95903 * 179.97438 * 7 6 5 10 10 O 1.21911 * 120.87225 * 179.97438 * 9 7 6 11 11 N 1.34655 * 118.25094 * 359.97424 * 9 7 6 12 12 C 1.30381 * 121.80915 * 0.02562 * 11 9 7 13 13 N 1.35571 * 123.24402 * 0.02562 * 12 11 9 14 14 C 1.36828 * 119.81801 * 179.97438 * 13 12 11 15 15 H 1.08002 * 119.99858 * 149.48845 * 14 13 12 16 16 C 1.39141 * 119.99923 * 329.48669 * 14 13 12 17 17 N 1.31229 * 120.00366 * 343.48397 * 16 14 13 18 18 Si 1.86806 * 119.99936 * 163.48734 * 16 14 13 19 19 H 1.48491 * 109.47044 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47160 * 120.00257 * 18 16 14 21 21 H 1.48503 * 109.47088 * 239.99559 * 18 16 14 22 22 H 1.08996 * 109.47189 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47119 * 300.00503 * 1 2 3 24 24 H 1.09004 * 109.46809 * 60.00370 * 1 2 3 25 25 H 1.08002 * 119.68583 * 359.95817 * 4 3 2 26 26 H 1.07991 * 120.11963 * 180.02562 * 5 4 3 27 27 H 1.07995 * 120.29401 * 359.77247 * 8 3 2 28 28 H 1.08000 * 118.37652 * 179.97438 * 12 11 9 29 29 H 0.97000 * 120.00355 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2112 0.0000 4 6 1.2843 2.3763 -0.0005 5 6 1.8929 3.6135 0.0000 6 6 3.2784 3.7000 0.0005 7 6 4.0514 2.5243 0.0000 8 6 3.4280 1.2793 -0.0047 9 6 5.5190 2.6622 0.0000 10 8 6.2397 1.6790 0.0000 11 7 6.0426 3.9028 0.0000 12 6 5.2891 4.9668 0.0005 13 7 3.9342 4.9180 0.0015 14 6 3.2116 6.0799 0.0025 15 1 2.2417 6.1130 -0.4716 16 6 3.7261 7.2187 0.6143 17 7 4.7268 7.1156 1.4570 18 14 2.9924 8.8945 0.2363 19 1 1.8830 8.7406 -0.7388 20 1 2.4715 9.5006 1.4879 21 1 4.0398 9.7747 -0.3412 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 0.2063 2.3106 -0.0016 26 1 1.2939 4.5121 0.0000 27 1 4.0180 0.3748 -0.0046 28 1 5.7678 5.9349 0.0009 29 1 5.0853 7.9095 1.8838 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353389537.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:47 Heat of formation + Delta-G solvation = -39.019602 kcal Electronic energy + Delta-G solvation = -17267.452798 eV Core-core repulsion = 14348.414723 eV Total energy + Delta-G solvation = -2919.038074 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.25329 -40.41419 -38.96232 -37.46448 -35.52179 -33.84512 -32.07448 -30.67050 -28.07178 -27.48009 -25.32288 -24.52312 -23.05275 -20.34015 -19.83249 -19.62745 -17.86662 -17.45150 -16.76251 -16.62266 -16.39095 -16.18974 -15.95216 -15.16261 -15.01235 -14.55712 -14.28706 -13.81370 -13.57159 -13.35158 -13.05914 -13.00073 -12.63436 -12.03734 -11.96850 -11.91872 -11.82611 -11.21770 -10.42219 -10.15584 -9.92610 -8.87417 -8.70936 -6.49044 -0.27596 0.02334 0.89744 1.47647 1.53884 1.66056 2.03106 2.24587 2.34594 2.47254 2.65741 3.28118 3.41404 3.65839 3.86706 3.94301 4.24697 4.43560 4.47017 4.48521 4.59978 4.74247 4.83677 4.92442 5.09155 5.12184 5.20136 5.46424 5.59147 6.13930 6.42600 6.60172 6.89209 7.10599 7.54200 8.28393 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.024293 B = 0.008049 C = 0.006179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.342434 B = 3478.038141 C = 4530.433728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.334 6.334 3 C 0.092 3.908 4 C -0.135 4.135 5 C -0.099 4.099 6 C 0.104 3.896 7 C -0.204 4.204 8 C -0.094 4.094 9 C 0.495 3.505 10 O -0.595 6.595 11 N -0.663 5.663 12 C 0.388 3.612 13 N -0.321 5.321 14 C -0.382 4.382 15 H 0.139 0.861 16 C 0.017 3.983 17 N -0.873 5.873 18 Si 1.017 2.983 19 H -0.245 1.245 20 H -0.274 1.274 21 H -0.271 1.271 22 H 0.120 0.880 23 H 0.068 0.932 24 H 0.070 0.930 25 H 0.181 0.819 26 H 0.165 0.835 27 H 0.125 0.875 28 H 0.199 0.801 29 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.833 0.111 -2.497 15.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.248 6.248 3 C 0.046 3.954 4 C -0.155 4.155 5 C -0.119 4.119 6 C -0.001 4.001 7 C -0.213 4.213 8 C -0.114 4.114 9 C 0.286 3.714 10 O -0.481 6.481 11 N -0.412 5.412 12 C 0.106 3.894 13 N 0.001 4.999 14 C -0.509 4.509 15 H 0.156 0.844 16 C -0.192 4.192 17 N -0.505 5.505 18 Si 0.837 3.163 19 H -0.168 1.168 20 H -0.199 1.199 21 H -0.195 1.195 22 H 0.139 0.861 23 H 0.087 0.913 24 H 0.089 0.911 25 H 0.198 0.802 26 H 0.183 0.817 27 H 0.143 0.857 28 H 0.215 0.785 29 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -13.553 -0.491 -2.352 13.765 hybrid contribution -0.444 0.592 0.273 0.789 sum -13.998 0.102 -2.079 14.152 Atomic orbital electron populations 1.23435 0.76019 1.05851 1.02680 1.86068 1.23857 1.25740 1.89157 1.18778 0.90966 0.85625 1.00077 1.21597 1.01835 0.89859 1.02212 1.20887 0.90501 0.99696 1.00816 1.18853 0.94289 0.84770 1.02171 1.20776 0.96225 0.93686 1.10587 1.20078 0.92640 0.96266 1.02465 1.19396 0.86843 0.87494 0.77663 1.90568 1.64508 1.39365 1.53637 1.69121 1.37558 0.99389 1.35176 1.24808 0.80315 0.98332 0.85898 1.41194 1.05602 1.05496 1.47642 1.20618 1.06354 0.85009 1.38927 0.84357 1.26697 0.96209 1.04790 0.91545 1.69834 1.24882 1.33846 1.21933 0.84519 0.78882 0.74031 0.78896 1.16784 1.19926 1.19547 0.86141 0.91322 0.91099 0.80213 0.81731 0.85703 0.78470 0.89267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.23 9.80 113.37 1.11 1.34 15 2 O -0.33 -9.51 10.49 -92.75 -0.97 -10.49 15 3 C 0.09 3.08 6.68 22.53 0.15 3.23 15 4 C -0.14 -3.82 9.01 22.42 0.20 -3.62 15 5 C -0.10 -3.36 9.29 22.32 0.21 -3.15 15 6 C 0.10 4.60 6.49 38.86 0.25 4.85 15 7 C -0.20 -9.93 5.89 -20.02 -0.12 -10.05 15 8 C -0.09 -4.01 9.61 22.54 0.22 -3.80 15 9 C 0.50 28.15 7.97 86.68 0.69 28.84 15 10 O -0.60 -36.64 17.47 -5.03 -0.09 -36.73 15 11 N -0.66 -36.98 10.41 -317.10 -3.30 -40.28 15 12 C 0.39 19.58 10.22 180.13 1.84 21.42 15 13 N -0.32 -15.01 2.80 -347.15 -0.97 -15.99 15 14 C -0.38 -16.05 8.79 84.13 0.74 -15.31 15 15 H 0.14 5.04 6.59 -2.91 -0.02 5.02 15 16 C 0.02 0.68 4.99 85.00 0.42 1.10 15 17 N -0.87 -39.74 11.23 21.69 0.24 -39.49 15 18 Si 1.02 31.02 29.58 68.60 2.03 33.05 15 19 H -0.25 -6.82 7.11 99.48 0.71 -6.11 15 20 H -0.27 -8.39 7.11 99.48 0.71 -7.69 15 21 H -0.27 -8.30 7.11 99.48 0.71 -7.60 15 22 H 0.12 1.35 8.14 -2.39 -0.02 1.33 15 23 H 0.07 0.92 7.65 -2.39 -0.02 0.90 15 24 H 0.07 0.91 7.65 -2.38 -0.02 0.90 15 25 H 0.18 3.23 6.25 -2.91 -0.02 3.21 15 26 H 0.17 4.74 6.48 -2.92 -0.02 4.72 15 27 H 0.13 5.51 7.82 -2.91 -0.02 5.49 15 28 H 0.20 9.65 6.18 -2.91 -0.02 9.63 15 29 H 0.30 12.35 8.30 -92.71 -0.77 11.58 15 Total: -1.00 -67.53 257.12 3.85 -63.67 By element: Atomic # 1 Polarization: 20.20 SS G_CDS: 1.20 Total: 21.39 kcal Atomic # 6 Polarization: 19.13 SS G_CDS: 5.72 Total: 24.85 kcal Atomic # 7 Polarization: -91.72 SS G_CDS: -4.03 Total: -95.75 kcal Atomic # 8 Polarization: -46.15 SS G_CDS: -1.06 Total: -47.21 kcal Atomic # 14 Polarization: 31.02 SS G_CDS: 2.03 Total: 33.05 kcal Total: -67.53 3.85 -63.67 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353389537.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.653 kcal (2) G-P(sol) polarization free energy of solvation -67.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds