Wall clock time and date at job start Mon Mar 30 2020 03:33:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.81402 * 103.00024 * 2 1 4 4 C 1.50700 * 109.46999 * 180.02562 * 3 2 1 5 5 N 1.30271 * 126.28485 * 89.97631 * 4 3 2 6 6 N 1.28667 * 109.38447 * 179.97438 * 5 4 3 7 7 C 1.30269 * 109.37908 * 0.02562 * 6 5 4 8 8 C 1.50703 * 126.28137 * 179.97438 * 7 6 5 9 9 S 1.81002 * 109.47178 * 90.02448 * 8 7 6 10 10 C 1.76198 * 100.00092 * 180.02562 * 9 8 7 11 11 H 1.08004 * 120.00019 * 0.02562 * 10 9 8 12 12 C 1.38795 * 119.99810 * 179.97438 * 10 9 8 13 13 N 1.31626 * 120.00234 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 119.99664 * 180.02562 * 12 10 9 15 15 H 1.48495 * 109.47169 * 359.97438 * 14 12 10 16 16 H 1.48502 * 109.47114 * 120.00091 * 14 12 10 17 17 H 1.48505 * 109.46890 * 239.99700 * 14 12 10 18 18 O 1.34365 * 126.28030 * 270.26405 * 4 3 2 19 19 H 1.08993 * 109.47184 * 179.97438 * 1 2 3 20 20 H 1.08999 * 109.46958 * 299.99727 * 1 2 3 21 21 H 1.09004 * 109.47237 * 59.99689 * 1 2 3 22 22 H 1.08996 * 109.46862 * 60.00106 * 3 2 1 23 23 H 1.08993 * 109.47469 * 300.00168 * 3 2 1 24 24 H 1.09002 * 109.47152 * 330.02355 * 8 7 6 25 25 H 1.09001 * 109.46980 * 210.02455 * 8 7 6 26 26 H 0.97005 * 119.99806 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7195 1.9373 -0.0006 5 7 4.4851 2.0239 -1.0511 6 7 5.7085 2.1632 -0.6775 7 6 5.7650 2.1698 0.6239 8 6 7.0096 2.3111 1.4618 9 16 7.3152 4.0633 1.7977 10 6 8.7837 3.9382 2.7632 11 1 9.2112 2.9688 2.9730 12 6 9.3917 5.0856 3.2534 13 7 8.8716 6.2671 2.9965 14 14 10.9490 4.9530 4.2764 15 1 11.3269 3.5241 4.4198 16 1 12.0479 5.6910 3.6033 17 1 10.7099 5.5385 5.6201 18 8 4.5106 2.0219 1.0822 19 1 -0.3633 -1.0276 -0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 1.8032 2.2371 0.8900 23 1 1.8032 2.2372 -0.8899 24 1 7.8594 1.8907 0.9239 25 1 6.8761 1.7786 2.4034 26 1 9.2964 7.0689 3.3394 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379367929.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:47 Heat of formation + Delta-G solvation = 33.160016 kcal Electronic energy + Delta-G solvation = -12778.419456 eV Core-core repulsion = 10304.875052 eV Total energy + Delta-G solvation = -2473.544404 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 246.024 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -43.99740 -35.92620 -33.48985 -32.58697 -30.54681 -29.24921 -26.86952 -25.60257 -22.67361 -22.22632 -17.97372 -17.49537 -17.06180 -16.28442 -15.15815 -14.93819 -14.82124 -14.43215 -14.18710 -13.95330 -13.22345 -13.08119 -12.83926 -12.69357 -12.15189 -11.62681 -11.18265 -11.15582 -11.02266 -10.76104 -10.54101 -10.16020 -9.21580 -9.15700 -8.54150 -8.05180 -6.76836 -6.38068 -4.12974 0.70158 1.61270 2.10148 2.37739 2.59420 3.15111 3.16613 3.24331 3.38208 3.80177 4.05526 4.38246 4.70613 4.77166 4.78472 4.93460 5.00406 5.19000 5.33346 5.41277 5.60217 5.67564 5.87913 6.08059 7.46779 8.21111 8.51668 9.08016 10.70040 Molecular weight = 246.02amu Principal moments of inertia in cm(-1) A = 0.066025 B = 0.004130 C = 0.004098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 423.977262 B = 6778.667723 C = 6831.261803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 S -0.227 6.227 3 C 0.010 3.990 4 C 0.149 3.851 5 N -0.262 5.262 6 N -0.285 5.285 7 C 0.222 3.778 8 C -0.040 4.040 9 S -0.085 6.085 10 C -0.526 4.526 11 H 0.081 0.919 12 C 0.074 3.926 13 N -0.867 5.867 14 Si 0.926 3.074 15 H -0.269 1.269 16 H -0.278 1.278 17 H -0.279 1.279 18 O -0.213 6.213 19 H 0.106 0.894 20 H 0.081 0.919 21 H 0.081 0.919 22 H 0.115 0.885 23 H 0.127 0.873 24 H 0.115 0.885 25 H 0.100 0.900 26 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.454 -9.577 -2.949 17.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.294 4.294 2 S -0.003 6.003 3 C -0.139 4.139 4 C -0.063 4.063 5 N -0.111 5.111 6 N -0.134 5.134 7 C 0.011 3.989 8 C -0.189 4.189 9 S 0.142 5.858 10 C -0.673 4.673 11 H 0.099 0.901 12 C -0.136 4.136 13 N -0.502 5.502 14 Si 0.752 3.248 15 H -0.194 1.194 16 H -0.204 1.204 17 H -0.205 1.205 18 O -0.092 6.092 19 H 0.125 0.875 20 H 0.100 0.900 21 H 0.100 0.900 22 H 0.133 0.867 23 H 0.145 0.855 24 H 0.133 0.867 25 H 0.118 0.882 26 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -13.985 -9.295 -4.461 17.375 hybrid contribution 0.400 -0.015 2.220 2.256 sum -13.585 -9.310 -2.241 16.621 Atomic orbital electron populations 1.23469 0.93472 1.07030 1.05413 1.87398 1.07562 1.07242 1.98100 1.21511 0.85983 0.97904 1.08475 1.26387 0.95599 1.03674 0.80661 1.74347 0.96550 1.14826 1.25381 1.74489 1.11278 1.18488 1.09099 1.27547 0.84616 0.95558 0.91194 1.22000 0.89385 1.07788 0.99687 1.85189 1.36510 0.94995 1.69146 1.22750 1.10694 0.96210 1.37693 0.90076 1.25043 0.98212 0.94355 0.95991 1.70009 1.39406 0.97755 1.43037 0.85997 0.81015 0.78594 0.79236 1.19363 1.20380 1.20451 1.84787 1.18222 1.68705 1.37495 0.87531 0.90016 0.89952 0.86651 0.85510 0.86727 0.88202 0.91983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.74 10.76 101.05 1.09 0.35 15 2 S -0.23 -2.42 22.36 -107.50 -2.40 -4.82 15 3 C 0.01 0.11 6.57 36.01 0.24 0.34 15 4 C 0.15 2.40 7.74 -12.94 -0.10 2.30 15 5 N -0.26 -4.90 12.22 32.55 0.40 -4.50 15 6 N -0.29 -5.89 12.22 32.55 0.40 -5.50 15 7 C 0.22 4.40 7.73 -12.94 -0.10 4.30 15 8 C -0.04 -0.81 6.30 36.01 0.23 -0.59 15 9 S -0.08 -2.17 21.42 -107.50 -2.30 -4.47 15 10 C -0.53 -14.30 9.50 30.94 0.29 -14.00 15 11 H 0.08 2.09 7.80 -52.48 -0.41 1.68 15 12 C 0.07 2.02 5.49 -17.43 -0.10 1.92 15 13 N -0.87 -25.09 13.22 55.49 0.73 -24.36 15 14 Si 0.93 20.70 29.55 -169.99 -5.02 15.68 15 15 H -0.27 -5.84 7.11 56.52 0.40 -5.44 15 16 H -0.28 -6.15 7.11 56.52 0.40 -5.75 15 17 H -0.28 -6.13 7.11 56.52 0.40 -5.73 15 18 O -0.21 -3.89 10.87 5.37 0.06 -3.83 15 19 H 0.11 0.52 8.14 -51.93 -0.42 0.10 15 20 H 0.08 0.39 8.14 -51.92 -0.42 -0.03 15 21 H 0.08 0.39 8.14 -51.92 -0.42 -0.03 15 22 H 0.12 0.98 8.14 -51.93 -0.42 0.56 15 23 H 0.13 1.08 8.14 -51.93 -0.42 0.66 15 24 H 0.11 2.19 8.14 -51.92 -0.42 1.77 15 25 H 0.10 1.84 8.14 -51.92 -0.42 1.41 15 26 H 0.27 7.25 8.31 -40.82 -0.34 6.91 15 LS Contribution 270.39 15.07 4.07 4.07 Total: -1.00 -31.97 270.39 -5.02 -37.00 By element: Atomic # 1 Polarization: -1.39 SS G_CDS: -2.50 Total: -3.89 kcal Atomic # 6 Polarization: -6.93 SS G_CDS: 1.55 Total: -5.38 kcal Atomic # 7 Polarization: -35.89 SS G_CDS: 1.53 Total: -34.36 kcal Atomic # 8 Polarization: -3.89 SS G_CDS: 0.06 Total: -3.83 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Atomic # 16 Polarization: -4.58 SS G_CDS: -4.71 Total: -9.29 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -31.97 -5.02 -37.00 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379367929.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.157 kcal (2) G-P(sol) polarization free energy of solvation -31.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds