Wall clock time and date at job start Mon Mar 30 2020 03:33:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.81402 * 103.00024 * 2 1 4 4 C 1.50700 * 109.46999 * 180.02562 * 3 2 1 5 5 N 1.30271 * 126.28485 * 89.97631 * 4 3 2 6 6 N 1.28667 * 109.38447 * 179.97438 * 5 4 3 7 7 C 1.30269 * 109.37908 * 0.02562 * 6 5 4 8 8 C 1.50703 * 126.28137 * 179.97438 * 7 6 5 9 9 S 1.81002 * 109.47178 * 90.02448 * 8 7 6 10 10 C 1.76198 * 100.00092 * 180.02562 * 9 8 7 11 11 H 1.08004 * 120.00019 * 0.02562 * 10 9 8 12 12 C 1.38795 * 119.99810 * 179.97438 * 10 9 8 13 13 N 1.31626 * 120.00234 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 119.99664 * 180.02562 * 12 10 9 15 15 H 1.48495 * 109.47169 * 359.97438 * 14 12 10 16 16 H 1.48502 * 109.47114 * 120.00091 * 14 12 10 17 17 H 1.48505 * 109.46890 * 239.99700 * 14 12 10 18 18 O 1.34365 * 126.28030 * 270.26405 * 4 3 2 19 19 H 1.08993 * 109.47184 * 179.97438 * 1 2 3 20 20 H 1.08999 * 109.46958 * 299.99727 * 1 2 3 21 21 H 1.09004 * 109.47237 * 59.99689 * 1 2 3 22 22 H 1.08996 * 109.46862 * 60.00106 * 3 2 1 23 23 H 1.08993 * 109.47469 * 300.00168 * 3 2 1 24 24 H 1.09002 * 109.47152 * 330.02355 * 8 7 6 25 25 H 1.09001 * 109.46980 * 210.02455 * 8 7 6 26 26 H 0.97005 * 119.99806 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7195 1.9373 -0.0006 5 7 4.4851 2.0239 -1.0511 6 7 5.7085 2.1632 -0.6775 7 6 5.7650 2.1698 0.6239 8 6 7.0096 2.3111 1.4618 9 16 7.3152 4.0633 1.7977 10 6 8.7837 3.9382 2.7632 11 1 9.2112 2.9688 2.9730 12 6 9.3917 5.0856 3.2534 13 7 8.8716 6.2671 2.9965 14 14 10.9490 4.9530 4.2764 15 1 11.3269 3.5241 4.4198 16 1 12.0479 5.6910 3.6033 17 1 10.7099 5.5385 5.6201 18 8 4.5106 2.0219 1.0822 19 1 -0.3633 -1.0276 -0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 1.8032 2.2371 0.8900 23 1 1.8032 2.2372 -0.8899 24 1 7.8594 1.8907 0.9239 25 1 6.8761 1.7786 2.4034 26 1 9.2964 7.0689 3.3394 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379367929.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:47 Heat of formation + Delta-G solvation = 8.464102 kcal Electronic energy + Delta-G solvation = -12779.490351 eV Core-core repulsion = 10304.875052 eV Total energy + Delta-G solvation = -2474.615299 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 246.024 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -45.43275 -37.38070 -34.84052 -34.62574 -31.80796 -29.78716 -28.32074 -27.59100 -24.08698 -23.65136 -19.93616 -18.85320 -18.39941 -17.37625 -16.93136 -16.44339 -16.29778 -15.79136 -15.01957 -14.85480 -14.63752 -14.45795 -13.80657 -13.64247 -13.48782 -13.24228 -13.07016 -12.93643 -12.78678 -12.21688 -11.92949 -11.29043 -11.20190 -10.77739 -10.31522 -8.84546 -8.81697 -8.42267 -6.22956 -0.43256 0.39286 1.02185 1.16982 1.39294 1.42125 1.49047 1.54925 1.70052 2.18857 2.53547 2.94347 3.11064 3.26590 3.58735 3.98201 4.07928 4.19018 4.33154 4.38972 4.40067 4.45326 4.51644 4.94274 5.39302 6.15333 7.00491 7.07075 8.67629 Molecular weight = 246.02amu Principal moments of inertia in cm(-1) A = 0.066025 B = 0.004130 C = 0.004098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 423.977262 B = 6778.667723 C = 6831.261803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 S -0.286 6.286 3 C 0.014 3.986 4 C 0.172 3.828 5 N -0.292 5.292 6 N -0.305 5.305 7 C 0.207 3.793 8 C -0.015 4.015 9 S -0.150 6.150 10 C -0.538 4.538 11 H 0.090 0.910 12 C 0.017 3.983 13 N -0.909 5.909 14 Si 1.002 2.998 15 H -0.257 1.257 16 H -0.274 1.274 17 H -0.272 1.272 18 O -0.218 6.218 19 H 0.118 0.882 20 H 0.097 0.903 21 H 0.098 0.902 22 H 0.142 0.858 23 H 0.152 0.848 24 H 0.124 0.876 25 H 0.118 0.882 26 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.485 -10.577 -2.349 18.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.274 4.274 2 S -0.063 6.063 3 C -0.134 4.134 4 C -0.041 4.041 5 N -0.140 5.140 6 N -0.153 5.153 7 C -0.005 4.005 8 C -0.164 4.164 9 S 0.076 5.924 10 C -0.686 4.686 11 H 0.108 0.892 12 C -0.188 4.188 13 N -0.545 5.545 14 Si 0.823 3.177 15 H -0.180 1.180 16 H -0.200 1.200 17 H -0.198 1.198 18 O -0.098 6.098 19 H 0.137 0.863 20 H 0.116 0.884 21 H 0.117 0.883 22 H 0.160 0.840 23 H 0.170 0.830 24 H 0.142 0.858 25 H 0.137 0.863 26 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -15.034 -10.307 -3.884 18.637 hybrid contribution 0.493 0.199 1.960 2.030 sum -14.542 -10.107 -1.924 17.814 Atomic orbital electron populations 1.23574 0.88461 1.08313 1.07052 1.87630 1.13006 1.07301 1.98337 1.21853 0.82230 0.98360 1.10996 1.27491 0.97295 0.99866 0.79412 1.74295 0.96239 1.17102 1.26356 1.74413 1.12672 1.18590 1.09599 1.27296 0.85102 0.97115 0.90992 1.21762 0.90210 1.03585 1.00853 1.85213 1.36880 1.00765 1.69506 1.23121 1.10962 0.96840 1.37669 0.89198 1.26119 1.01738 0.93843 0.97129 1.70146 1.41238 0.98662 1.44444 0.84856 0.76332 0.79170 0.77332 1.18033 1.19961 1.19774 1.84792 1.17922 1.68816 1.38242 0.86324 0.88397 0.88299 0.84009 0.83049 0.85797 0.86329 0.91730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.88 10.76 113.37 1.22 0.34 15 2 S -0.29 -5.54 22.36 -56.49 -1.26 -6.80 15 3 C 0.01 0.26 6.57 71.24 0.47 0.73 15 4 C 0.17 5.35 7.74 88.34 0.68 6.03 15 5 N -0.29 -10.85 12.22 -165.50 -2.02 -12.88 15 6 N -0.30 -12.65 12.22 -165.50 -2.02 -14.68 15 7 C 0.21 8.20 7.73 88.34 0.68 8.88 15 8 C -0.02 -0.62 6.30 71.24 0.45 -0.17 15 9 S -0.15 -7.83 21.42 -56.49 -1.21 -9.04 15 10 C -0.54 -29.35 9.50 67.95 0.65 -28.71 15 11 H 0.09 4.57 7.80 -2.91 -0.02 4.55 15 12 C 0.02 0.93 5.49 84.86 0.47 1.39 15 13 N -0.91 -53.29 13.22 21.65 0.29 -53.01 15 14 Si 1.00 42.08 29.55 68.60 2.03 44.11 15 15 H -0.26 -10.14 7.11 99.48 0.71 -9.44 15 16 H -0.27 -11.26 7.11 99.48 0.71 -10.55 15 17 H -0.27 -11.08 7.11 99.48 0.71 -10.37 15 18 O -0.22 -7.83 10.87 -3.71 -0.04 -7.87 15 19 H 0.12 0.77 8.14 -2.39 -0.02 0.75 15 20 H 0.10 0.55 8.14 -2.39 -0.02 0.54 15 21 H 0.10 0.55 8.14 -2.39 -0.02 0.53 15 22 H 0.14 1.96 8.14 -2.39 -0.02 1.94 15 23 H 0.15 2.14 8.14 -2.39 -0.02 2.12 15 24 H 0.12 4.71 8.14 -2.39 -0.02 4.69 15 25 H 0.12 4.27 8.14 -2.39 -0.02 4.25 15 26 H 0.27 14.86 8.31 -92.70 -0.77 14.09 15 Total: -1.00 -70.14 270.39 1.56 -68.58 By element: Atomic # 1 Polarization: 1.90 SS G_CDS: 1.19 Total: 3.09 kcal Atomic # 6 Polarization: -16.13 SS G_CDS: 4.61 Total: -11.51 kcal Atomic # 7 Polarization: -76.80 SS G_CDS: -3.76 Total: -80.56 kcal Atomic # 8 Polarization: -7.83 SS G_CDS: -0.04 Total: -7.87 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.11 kcal Atomic # 16 Polarization: -13.37 SS G_CDS: -2.47 Total: -15.84 kcal Total: -70.14 1.56 -68.58 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379367929.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.047 kcal (2) G-P(sol) polarization free energy of solvation -70.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds